Rroxscaffold_6G00409860

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
32375441 .. 32375962
522 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00409860.1

Sequence Viewer

Length: 186 bp
ATGTTCTTAACAACTCTCCAGAAGGAATCGAGGCCTGAAATTGAAGTTTTTACGTCGAAATCAAGCTCGCCGTTTTCTCGCAATTTTCGCCGGTTTCGGAAATTTTCCGCCAAGTCAACTGTTCTAGGTAATTTTCTCCTACTTCCATTCATTTTCAGACTTTGTGTTAGTTATGAAAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.18

Weight (kDa)

10.19

Isoelectric Point (pI)

75.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 101
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 101
BceAI ACGGC 1 cut(s) 55
BfaI CTAG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 90
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 91
BsnI GGCC 1 cut(s) 34
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 90
CviJI RGCY 2 cut(s) 34, 66
CviKI_1 RGCY 2 cut(s) 34, 66
EciI GGCGGA 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 34
FaiI YATR 1 cut(s) 174
FspBI CTAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 99, 158
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 53
LpnPI CCDG 3 cut(s) 32, 48, 104
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 53
MluCI AATT 4 cut(s) 39, 82, 101, 130
MnlI CCTC 1 cut(s) 24
MseI TTAA 2 cut(s) 8, 184
MspI CCGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 87
PceI AGGCCT 1 cut(s) 34
PfeI GAWTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 8, 184
SetI ASST 3 cut(s) 56, 68, 130
SgeI CNNG 9 cut(s) 31, 42, 47, 75, 79, 90, 103, 124, 137
Sse9I AATT 4 cut(s) 39, 82, 101, 130
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 34
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 29, 56
TasI AATT 4 cut(s) 39, 82, 101, 130
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 8, 184
Tru9I TTAA 2 cut(s) 8, 184
TspDTI ATGAA 1 cut(s) 139
XapI RAATTY 1 cut(s) 101
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.