RchiOBHm_Chr2g0169461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018978
Physical Location & Seq
Forward (+)
83705739 .. 83706329
591 bp
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UTR
Exon/CDS
Intron
PRQ53705

Sequence Viewer

Length: 204 bp
ATGCCGGCCGAGATGGGTGGGTCGGTTGAGATGGTGACGTCTTTGGATCGGACCCCGGTGGGACTTTGTCAAGGGGGGATGGGTTCGGTGGATGGTGCTGTCTTTATGGATGCGGATGAAGAGGAACTCATGTTAGCCGTCGGAGTGATCGGCGACGGCGGCCATTGGAGAAATGGTAGAGTAGTGTTGGTGGTGAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

6.94

Weight (kDa)

4.1

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AciI CCGC 2 cut(s) 113, 159
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 6, 160
AcyI GRCGYC 1 cut(s) 38
AlwI GGATC 1 cut(s) 54
AoxI GGCC 2 cut(s) 6, 160
AspS9I GGNCC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 51
BccI CCATC 4 cut(s) 7, 25, 73, 86
BceAI ACGGC 2 cut(s) 122, 172
BcnI CCSGG 1 cut(s) 56
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse118I RCCGGY 1 cut(s) 4
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 4 cut(s) 84, 97, 115, 121
BseX3I CGGCCG 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 162
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 5, 56
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 2 cut(s) 8, 162
Bsp143I GATC 2 cut(s) 46, 147
BspACI CCGC 2 cut(s) 113, 159
BspANI GGCC 2 cut(s) 8, 162
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 46, 147
BssNI GRCGYC 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 4 cut(s) 84, 97, 115, 121
BstKTI GATC 2 cut(s) 49, 150
BstMBI GATC 2 cut(s) 46, 147
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 162
BtsCI GGATG 4 cut(s) 84, 97, 115, 121
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 8, 137, 162
CviKI_1 RGCY 3 cut(s) 8, 137, 162
DpnI GATC 2 cut(s) 48, 149
DpnII GATC 2 cut(s) 46, 147
EaeI YGGCCR 2 cut(s) 6, 160
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EclXI CGGCCG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 6
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 107, 131
FaqI GGGAC 1 cut(s) 75
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 4 cut(s) 91, 104, 122, 128
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 8, 162
HapII CCGG 2 cut(s) 5, 56
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 1 cut(s) 133
HpaII CCGG 2 cut(s) 5, 56
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 51, 143
Hpy99I CGWCG 2 cut(s) 143, 158
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 1 cut(s) 133
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 46, 147
LpnPI CCDG 2 cut(s) 18, 69
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 48, 149
MboI GATC 2 cut(s) 46, 147
MboII GAAGA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 115
MroNI GCCGGC 1 cut(s) 4
MspI CCGG 2 cut(s) 5, 56
MspR9I CCNGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 159
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 46, 147
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 34
PdiI GCCGGC 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 51
PsyI GACNNNGTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 2 cut(s) 46, 147
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 56
SetI ASST 1 cut(s) 41
SfaNI GCATC 1 cut(s) 100
SgeI CNNG 6 cut(s) 17, 22, 67, 68, 83, 142
SinI GGWCC 1 cut(s) 51
SsiI CCGC 2 cut(s) 113, 159
StyD4I CCNGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 41
TauI GCSGC 1 cut(s) 162
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.