Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018978

Physical Location & Seq

Genomic Coordinates Reverse (-)

46064866 .. 46093421

Gene Structure 28556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTGGCTCTATATTTCAACTCTGCTTCAGCTCGGTATTGCGCTGTGGAAGACCGGAGTTCATTCGTTGCTTTTCAAGCCAATACCAGTGTTGTTATCAGCTGGGAACTTTCCAGGAATCGTAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAATTGGTGTTTATGGTAGGCCTCATGTGAGCTGTACCCGTCCCAAGCCTCCCAGAAAGGTCCCCAAGTCACCTCATAAGGTTGGAAGATTTGGCAATGATCTCATAATTGATTCCTCAACAAAATCTGTCCACAGAGAAAAGGCTTCCCTAGATCGTAGTTCAACTGCTGATTCATCATTGGTTGCTGATGGAAAGTCAGGAATTACTTACAGCAATGGTGATCATGAAATTGAATCTGTTTTCACCCACGGCGAAGATGAACATGCAAGAAGTCCCAATGACAGTCTAGCTGGAAGGACTGCTGTAGACAGCCCGTCTGGAGAGTTCTTGCTTCGTGTTATTGCTTCCAACAAGGACCGAAATGGCTCAGATTCTGAGAAGCACAAAGATTTCTTTGGATCTGATGACTATGGTGTCAACCCAGTAAGAACTGGATCCCCCAATGCAGATACCACCTTTCAGAAGAAGAGCATTTTCTTTGAAGACTCTGTTCCTAGCACACCAGTCTCGAGGTTTGCCAACTCGCCAAGATATAGTGAGGCCGGGGATCACTACTTGAAGATATTGAAGATATTGGCTTGTGCGTGTGCACTTGGATTGGGACAAAAGATCGATAGTCGGAGACGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

265

Amino Acids

28.91

Weight (kDa)

8.88

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018978)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0169461 RchiOBHm_Chr7g0209401
rosa_multiflora	Rmu_sc0000117.1_g000028 Rmu_sc0000813.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141080 Rroxscaffold_3G00274460 Rroxscaffold_5G00364860
rosa_samantha	Rh1DG134900 Rh4AG185100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	471
AclWI	GGATC	4 cut(s)	571, 594, 607, 720
AcuI	CTGAAG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	8 cut(s)	18, 76, 165, 327, 398, 647, 724, 733
AhdI	GACNNNNNGTC	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	31, 101, 195, 455
AluI	AGCT	4 cut(s)	31, 101, 195, 455
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	2 cut(s)	676, 781
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	4 cut(s)	571, 594, 607, 720
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	673
AoxI	GGCC	2 cut(s)	182, 705
ApaLI	GTGCAC	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	223, 520
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	3 cut(s)	225, 395, 400
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	2 cut(s)	223, 520
BaeGI	GKGCMC	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	599
BbsI	GAAGAC	2 cut(s)	56, 654
Bbv12I	GWGCWC	1 cut(s)	757
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	676, 781
BfaI	CTAG	3 cut(s)	314, 452, 660
BfmI	CTRYAG	1 cut(s)	468
Bme1390I	CCNGG	2 cut(s)	114, 709
Bme18I	GGWCC	2 cut(s)	223, 520
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	223, 520
BmiI	GGNNCC	3 cut(s)	135, 225, 601
BmrFI	CCNGG	2 cut(s)	114, 709
BmrI	ACTGGG	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	2 cut(s)	56, 654
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	709
Bsa29I	ATCGAT	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	412, 708
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	4 cut(s)	86, 587, 601, 668
Bse3DI	GCAATG	2 cut(s)	265, 385
BseBI	CCWGG	1 cut(s)	114
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	412, 708
BseMI	GCAATG	2 cut(s)	265, 385
BseMII	CTCAG	2 cut(s)	531, 546
BseNI	ACTGG	4 cut(s)	86, 587, 601, 668
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	757
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	2 cut(s)	184, 707
BshVI	ATCGAT	1 cut(s)	777
BsiHKAI	GWGCWC	1 cut(s)	757
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	54, 708
BslFI	GGGAC	4 cut(s)	189, 209, 423, 780
BsmAI	GTCTC	2 cut(s)	676, 781
BsmBI	CGTCTC	1 cut(s)	781
BsmFI	GGGAC	4 cut(s)	189, 209, 423, 780
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	184, 707
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
BspANI	GGCC	2 cut(s)	184, 707
BspCNI	CTCAG	2 cut(s)	532, 545
BspDI	ATCGAT	1 cut(s)	777
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	135, 225, 601
BspPI	GGATC	4 cut(s)	571, 594, 607, 720
BspQI	GCTCTTC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	265, 385
BsrI	ACTGG	4 cut(s)	86, 587, 601, 668
BssECI	CCNNGG	2 cut(s)	412, 708
BssMI	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	1 cut(s)	626
BstDEI	CTNAG	2 cut(s)	532, 540
BstDSI	CCRYGG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	7 cut(s)	265, 319, 388, 566, 602, 715, 777
BstMAI	GTCTC	2 cut(s)	676, 781
BstMBI	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	112, 707
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	56, 654
BstX2I	RGATCY	2 cut(s)	563, 599
BstYI	RGATCY	2 cut(s)	563, 599
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	184, 707
BsuTUI	ATCGAT	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	223, 520
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	188, 389, 428
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	2 cut(s)	532, 540
DpnI	GATC	7 cut(s)	264, 318, 387, 565, 601, 714, 776
DpnII	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
DrdI	GACNNNNNNGTC	1 cut(s)	578
DriI	GACNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	626
Eam1105I	GACNNNNNGTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	626
Eco147I	AGGCCT	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	223, 520
Eco57I	CTGAAG	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	781
FaeI	CATG	3 cut(s)	191, 392, 431
FaiI	YATR	9 cut(s)	12, 177, 189, 240, 269, 390, 429, 576, 699
FaqI	GGGAC	4 cut(s)	189, 209, 423, 780
FatI	CATG	3 cut(s)	187, 388, 427
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	471
FspBI	CTAG	3 cut(s)	314, 452, 660
GlaI	GCGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	184, 707
HapII	CCGG	2 cut(s)	54, 708
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	191, 392, 431
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	6 cut(s)	117, 275, 335, 398, 536, 650
HpaII	CCGG	2 cut(s)	54, 708
HphI	GGTGA	3 cut(s)	225, 395, 400
Hpy166II	GTNNAC	4 cut(s)	295, 472, 583, 755
Hpy188I	TCNGA	5 cut(s)	535, 541, 568, 627, 786
Hpy188III	TCNNGA	4 cut(s)	363, 389, 483, 673
Hpy8I	GTNNAC	4 cut(s)	295, 472, 583, 755
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	4 cut(s)	128, 431, 611, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	532, 540
Hsp92II	CATG	3 cut(s)	191, 392, 431
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	314, 452, 660
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	7 cut(s)	264, 318, 387, 565, 601, 714, 776
MboI	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
MboII	GAAGA	8 cut(s)	61, 261, 431, 640, 643, 659, 736, 745
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	2 cut(s)	563, 599
MhlI	GDGCHC	1 cut(s)	757
MluCI	AATT	5 cut(s)	123, 165, 270, 366, 393
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	3 cut(s)	226, 537, 764
MnlI	CCTC	8 cut(s)	124, 152, 195, 222, 246, 289, 669, 697
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	54, 708
MspR9I	CCNGG	2 cut(s)	114, 709
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	709
NdeII	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
NlaIII	CATG	3 cut(s)	191, 392, 431
NlaIV	GGNNCC	3 cut(s)	135, 225, 601
NmuCI	GTSAC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	673
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	5 cut(s)	117, 275, 335, 398, 536
PfoI	TCCNGGA	1 cut(s)	112
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	135, 225, 601
PspPI	GGNCC	2 cut(s)	223, 520
PspPPI	RGGWCCY	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	563, 599
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	626
Sau3AI	GATC	7 cut(s)	262, 316, 385, 563, 599, 712, 774
Sau96I	GGNCC	2 cut(s)	223, 520
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	114, 709
SduI	GDGCHC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	673
SinI	GGWCC	2 cut(s)	223, 520
SlaI	CTCGAG	1 cut(s)	673
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	5 cut(s)	123, 165, 270, 366, 393
SseBI	AGGCCT	1 cut(s)	184
SspMI	CTAG	3 cut(s)	314, 452, 660
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	112, 707
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	3 cut(s)	157, 674, 777
TaqII	GACCGA	1 cut(s)	537
TasI	AATT	5 cut(s)	123, 165, 270, 366, 393
TfiI	GAWTC	5 cut(s)	117, 275, 335, 398, 536
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	4 cut(s)	50, 327, 405, 438
TspRI	CASTG	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	2 cut(s)	223, 520
XceI	RCATGY	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	3 cut(s)	314, 452, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.