Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018978

Physical Location & Seq

Genomic Coordinates Reverse (-)

28282326 .. 28282990

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCGGCCGAGATGGGTGGGTTGGTAGATGCGGAAGAAGAGGAACTCGTGTTAGATGTTGGAGTGATCGGCGACGGCGACTATTGGAGAAATGGATTTGGCAATGATCTCATAATTGATTCCTCAACAAAATCTGTCCACAGAGAAAAGGCTTCCCCAGATCGTAGTTCAATTGCTGATTCATCATTGGTTGCTGATGGAAAGTCGGGAATTACTTACAGCAATGGTGATCATGAAATTGAATCTGTTTTCACCCACGGCGAAGATGAACATGCAAGAAGTCCCAATGGCAGTCTAGTTGGAAGGACTGCTGTAGACAGCCCGTCTCGAGAGTTCTTGCTTCGTGTTATTGCTTCTAACAAGGACCGAAATGTCTATGAATTGAGGTACTTCAACATAGCTGAGAATGAAGCAGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

142

Amino Acids

15.55

Weight (kDa)

4.39

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018978)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0169461 RchiOBHm_Chr7g0209401
rosa_multiflora	Rmu_sc0000117.1_g000028 Rmu_sc0000813.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141080 Rroxscaffold_3G00274460 Rroxscaffold_5G00364860
rosa_samantha	Rh1DG134900 Rh4AG185100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	171, 242, 394
AhdI	GACNNNNNGTC	1 cut(s)	322
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	239, 244
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	364
BauI	CACGAG	1 cut(s)	47
BccI	CCATC	2 cut(s)	7, 191
BceAI	ACGGC	2 cut(s)	91, 274
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	364
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	2 cut(s)	109, 229
BseDI	CCNNGG	1 cut(s)	256
BseMI	GCAATG	2 cut(s)	109, 229
BseMII	CTCAG	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	66, 106, 160, 229
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	109, 229
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	66, 106, 160, 229
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	256
BstKTI	GATC	4 cut(s)	69, 109, 163, 232
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	4 cut(s)	66, 106, 160, 229
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	312
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	233, 272
CviJI	RGCY	4 cut(s)	8, 152, 321, 401
CviKI_1	RGCY	4 cut(s)	8, 152, 321, 401
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	68, 108, 162, 231
DpnII	GATC	4 cut(s)	66, 106, 160, 229
DrdI	GACNNNNNNGTC	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	364
Eco52I	CGGCCG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	236, 275
FaiI	YATR	5 cut(s)	113, 234, 273, 378, 398
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	232, 271
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	236, 275
HinfI	GANTC	3 cut(s)	119, 179, 242
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	239, 244
Hpy166II	GTNNAC	2 cut(s)	139, 316
Hpy188III	TCNNGA	4 cut(s)	207, 233, 327, 329
Hpy8I	GTNNAC	2 cut(s)	139, 316
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	236, 275
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	66, 106, 160, 229
LpnPI	CCDG	2 cut(s)	18, 171
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	296
MalI	GATC	4 cut(s)	68, 108, 162, 231
MboI	GATC	4 cut(s)	66, 106, 160, 229
MboII	GAAGA	3 cut(s)	47, 50, 275
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	5 cut(s)	114, 171, 210, 237, 380
MmeI	TCCRAC	2 cut(s)	40, 280
MnlI	CCTC	5 cut(s)	34, 133, 378, 409, 412
MroNI	GCCGGC	1 cut(s)	4
MspI	CCGG	1 cut(s)	5
MunI	CAATTG	1 cut(s)	171
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	4 cut(s)	66, 106, 160, 229
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	236, 275
NmeAIII	GCCGAG	1 cut(s)	34
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	119, 179, 242
PspPI	GGNCC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
Sau3AI	GATC	4 cut(s)	66, 106, 160, 229
Sau96I	GGNCC	1 cut(s)	364
SetI	ASST	2 cut(s)	389, 403
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	5 cut(s)	114, 171, 210, 237, 380
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	296
TaqI	TCGA	1 cut(s)	328
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	114, 171, 210, 237, 380
TfiI	GAWTC	3 cut(s)	119, 179, 242
TspDTI	ATGAA	5 cut(s)	171, 249, 282, 393, 423
VpaK11BI	GGWCC	1 cut(s)	364
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.