Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018978

Physical Location & Seq

Genomic Coordinates Forward (+)

66110872 .. 66111536

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCGGCCGAGATGGTTGGGTTGGTGGATGCGGAAGAAGAGGAACTCGTGTTAGATGTCGGAGTGATCGGTGACGGCGGCTATTGGAGAAATGGATTTGGCAATGATCTCATAATTGATTCCTCAACAAAATCTGTCCACAGAGAAAAGGCTTCCCCATATCGTAGTTCAACTGCTGATTCACCATTGGTTGCTAATGGAAAGTCGGGAATTACTTACAGCAATGGTGATCATGAAATTGAATCTGTTTTCACCCACGTCGAAGATGAACATGCAAGAAGTCCCAATGGCAGTCTAGCTGGAAGGACTGCTGTAGGCAGCCCGTCTCGAGAGTTTTTGCTTCGTGTTATTGCTTCCAACAAGGACCGAAATGTCTATGAATTGAGGTACTTCAACATAGCTGAGAATGAAGCAGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

142

Amino Acids

15.53

Weight (kDa)

4.57

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018978)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0169461 RchiOBHm_Chr7g0209401
rosa_multiflora	Rmu_sc0000117.1_g000028 Rmu_sc0000813.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141080 Rroxscaffold_3G00274460 Rroxscaffold_5G00364860
rosa_samantha	Rh1DG134900 Rh4AG185100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AciI	CCGC	2 cut(s)	32, 78
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	171, 242, 394
AjiI	CACGTC	1 cut(s)	259
AluBI	AGCT	2 cut(s)	299, 401
AluI	AGCT	2 cut(s)	299, 401
Alw26I	GTCTC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	83, 174, 239, 244
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	364
BauI	CACGAG	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	79, 319
BlsI	GCNGC	2 cut(s)	80, 320
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	2 cut(s)	109, 229
BseGI	GGATG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	109, 229
BseMII	CTCAG	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	66, 106, 229
BspACI	CCGC	2 cut(s)	32, 78
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	109, 229
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	3 cut(s)	66, 106, 229
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	69, 109, 232
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	3 cut(s)	66, 106, 229
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	330
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	233, 272
CviJI	RGCY	6 cut(s)	8, 81, 152, 299, 321, 401
CviKI_1	RGCY	6 cut(s)	8, 81, 152, 299, 321, 401
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	3 cut(s)	68, 108, 231
DpnII	GATC	3 cut(s)	66, 106, 229
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	364
Eco52I	CGGCCG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	236, 275
FaiI	YATR	6 cut(s)	113, 160, 234, 273, 378, 398
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	232, 271
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	79, 319
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	79, 319
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	79, 319
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	236, 275
HinfI	GANTC	3 cut(s)	119, 179, 242
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	4 cut(s)	83, 174, 239, 244
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	4 cut(s)	207, 233, 327, 329
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	297
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	236, 275
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	66, 106, 229
LpnPI	CCDG	2 cut(s)	18, 285
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	3 cut(s)	68, 108, 231
MboI	GATC	3 cut(s)	66, 106, 229
MboII	GAAGA	3 cut(s)	47, 50, 275
MluCI	AATT	4 cut(s)	114, 210, 237, 380
MmeI	TCCRAC	2 cut(s)	40, 381
MnlI	CCTC	5 cut(s)	34, 133, 378, 409, 412
MroNI	GCCGGC	1 cut(s)	4
MspI	CCGG	1 cut(s)	5
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	3 cut(s)	66, 106, 229
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	236, 275
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	119, 179, 242
PkrI	GCNGC	2 cut(s)	80, 320
PspPI	GGNCC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SatI	GCNGC	2 cut(s)	79, 319
Sau3AI	GATC	3 cut(s)	66, 106, 229
Sau96I	GGNCC	1 cut(s)	364
SetI	ASST	4 cut(s)	261, 301, 389, 403
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	4 cut(s)	114, 210, 237, 380
SsiI	CCGC	2 cut(s)	32, 78
SspMI	CTAG	1 cut(s)	296
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	261, 328
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	114, 210, 237, 380
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	119, 179, 242
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	4 cut(s)	249, 282, 393, 423
VpaK11BI	GGWCC	1 cut(s)	364
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	327
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.