Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018978

Physical Location & Seq

Genomic Coordinates Reverse (-)

79428417 .. 79429081

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCGGCCGAGATGGTTGGGTTGGTGGATGCGGAAGAAGAGGAACTCGTGTTAGATGTCGGAGTGATCGGTGACGGCGGCTATTGGAGAAATGAAGATTTGTGTCTTAAAATTTCAGGATTTGGCAATGATCTCATAATTGATTCCTCAACAAAATCTGTCCACAGAGAAAAGGCTTCCCCAGATCGTAGTTCAACTGCTGATTCATCATTGGTTGCTAATGGAAAGTTGGGAATTACTTACAGCAATGGTGATCATGAAATTGAATCTGTTTTCACCCACGGCGAAGATGAACATGCAAGAAGTCCCAATGTCAGTCTAGCTGGAAGGACTGCTGTAGGCAGCCCGTCTCGAGAGTTCTTGCTTCGTGTTATTGCTTCCAACAAGGACCGAAATGTCTATGAATTGAGGTACTTCAACATAGCTGAGAATGAAGCAGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

150

Amino Acids

16.4

Weight (kDa)

4.5

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018978)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0169461 RchiOBHm_Chr7g0209401
rosa_multiflora	Rmu_sc0000117.1_g000028 Rmu_sc0000813.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141080 Rroxscaffold_3G00274460 Rroxscaffold_5G00364860
rosa_samantha	Rh1DG134900 Rh4AG185100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AciI	CCGC	2 cut(s)	32, 78
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	195, 266, 418
AluBI	AGCT	2 cut(s)	323, 425
AluI	AGCT	2 cut(s)	323, 425
Alw26I	GTCTC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	83, 263, 268
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	2 cut(s)	91, 298
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	2 cut(s)	79, 343
BlsI	GCNGC	2 cut(s)	80, 344
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	388
BmsI	GCATC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	2 cut(s)	133, 253
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	133, 253
BseMII	CTCAG	1 cut(s)	417
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	66, 130, 184, 253
BspACI	CCGC	2 cut(s)	32, 78
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	133, 253
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	66, 130, 184, 253
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	69, 133, 187, 256
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	4 cut(s)	66, 130, 184, 253
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	354
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	2 cut(s)	257, 296
CviJI	RGCY	6 cut(s)	8, 81, 176, 323, 345, 425
CviKI_1	RGCY	6 cut(s)	8, 81, 176, 323, 345, 425
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	4 cut(s)	68, 132, 186, 255
DpnII	GATC	4 cut(s)	66, 130, 184, 253
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	388
Eco52I	CGGCCG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	2 cut(s)	260, 299
FaiI	YATR	5 cut(s)	137, 258, 297, 402, 422
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	256, 295
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	79, 343
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	79, 343
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	2 cut(s)	79, 343
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	260, 299
HinfI	GANTC	3 cut(s)	143, 203, 266
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	83, 263, 268
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	4 cut(s)	117, 257, 351, 353
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	260, 299
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	66, 130, 184, 253
LpnPI	CCDG	4 cut(s)	18, 102, 195, 309
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	4 cut(s)	68, 132, 186, 255
MboI	GATC	4 cut(s)	66, 130, 184, 253
MboII	GAAGA	4 cut(s)	47, 50, 107, 299
MluCI	AATT	5 cut(s)	111, 138, 234, 261, 404
MmeI	TCCRAC	2 cut(s)	40, 405
MnlI	CCTC	5 cut(s)	34, 157, 402, 433, 436
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	5
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	4 cut(s)	66, 130, 184, 253
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	260, 299
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	351
PagI	TCATGA	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	143, 203, 266
PkrI	GCNGC	2 cut(s)	80, 344
PspPI	GGNCC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	79, 343
Sau3AI	GATC	4 cut(s)	66, 130, 184, 253
Sau96I	GGNCC	1 cut(s)	388
SetI	ASST	3 cut(s)	325, 413, 427
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	111, 138, 234, 261, 404
SsiI	CCGC	2 cut(s)	32, 78
SspMI	CTAG	1 cut(s)	320
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	5 cut(s)	111, 138, 234, 261, 404
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	143, 203, 266
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	6 cut(s)	108, 195, 273, 306, 417, 447
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	351
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.