RchiOBHm_Chr2g0176171

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
88102628 .. 88106530
3903 bp
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UTR
Exon/CDS
Intron
PRQ54319

Sequence Viewer

Length: 228 bp
ATGGAGAGGCAATCTCGCAGACCAAGGGGTTGGTCATTCCGTCTCCGAGCGAGCCGTCCAAGAAGATCGAGATGTACTCGCCGGTCTTTTATGCTGCTTGTACTGCAGGAGGAATCCACAGCTGTGTCTTACTCTCATGGCTGTACTTATCTTGACCTCGTCAAGTGCAATATGCAGGTCCATTTTTCTCCAGATCTCTCATTAATTTGTTTCAAGTTCTATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

9.02

Weight (kDa)

10.49

Isoelectric Point (pI)

91.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018534)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AfaI GTAC 3 cut(s) 76, 102, 145
AgsI TTSAA 1 cut(s) 214
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 94
AseI ATTAAT 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 166
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BplI GAGNNNNNCTC 3 cut(s) 30, 61, 93
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 47
BsmBI CGTCTC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 65, 193
BspMAI CTGCAG 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 65, 193
BssT1I CCWWGG 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 52
BstKTI GATC 2 cut(s) 68, 196
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 65, 193
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 30
BstYI RGATCY 1 cut(s) 193
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 75, 101, 144
CviAII CATG 1 cut(s) 137
CviJI RGCY 3 cut(s) 54, 122, 141
CviKI_1 RGCY 3 cut(s) 54, 122, 141
CviQI GTAC 3 cut(s) 75, 101, 144
DpnI GATC 2 cut(s) 67, 195
DpnII GATC 2 cut(s) 65, 193
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 92, 138, 173
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 174
HapII CCGG 1 cut(s) 82
Hin1II CATG 1 cut(s) 140
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 69, 152, 191
HpyCH4V TGCA 3 cut(s) 106, 168, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 2 cut(s) 65, 193
LpnPI CCDG 4 cut(s) 92, 95, 161, 204
Lsp1109I GCAGC 1 cut(s) 81
MalI GATC 2 cut(s) 67, 195
MboI GATC 2 cut(s) 65, 193
MboII GAAGA 1 cut(s) 75
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 204
MnlI CCTC 2 cut(s) 103, 167
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 65, 193
NlaIII CATG 1 cut(s) 140
OliI CACNNNNGTG 1 cut(s) 122
PfeI GAWTC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 203
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 3 cut(s) 76, 102, 145
RsaNI GTAC 3 cut(s) 75, 101, 144
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 65, 193
Sau96I GGNCC 1 cut(s) 178
SetI ASST 3 cut(s) 124, 159, 180
SfcI CTRYAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 1 cut(s) 204
StyI CCWWGG 1 cut(s) 23
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 204
TatI WGTACW 3 cut(s) 74, 100, 143
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseI GCWGC 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.