RLG00000033785
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018534
Physical Location & Seq
Forward (+)
32168580 .. 32169940
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033785

Sequence Viewer

Length: 387 bp
ATGCTACTTCTACTGCAGGAGGAATCCACAGCTGTGTCTTACTCACATGGCTGTACTTATCTTGACCTCATCCAGTGCAATATGCAGGGGAGGCATCCTAGGCCAGCTTTAGAATATGAGAAATCACAGGAAAAGCCTGTTGAAATTGGCTCAAGCTCTTTGACAACTCCAAAATCCCTATGGATGCCATTTAAAGCGCTATTTGAAGCTATTTCAAAAGAAGTTGCTCCAAAAGATATGAAATTGGTTAATGTTCACTATGATCTATTCAGGTGCAAGAAGATCAGCCGGGATGGTTTTATTCAGAAGTTAAGAGCAATTGTTGGAGATGCGTTGCTGAGGTCAACCATAATGAGCCTTCAGTGCAAGGTAATGTTGTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

8.93

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 57 - 121 6.3e-27 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018534)

Species Orthologous Gene IDs
pyrus_communis pycom07g04710
rosa_chinensis RchiOBHm_Chr2g0176171
rosa_laevigata RLG00000011568 RLG00000013827 RLG00000018612 RLG00000026517 RLG00000032416 RLG00000033785
rosa_multiflora Rmu_sc0006800.1_g000008
rosa_roxburghii Rroxscaffold_7G00196410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 55
AfeI AGCGCT 1 cut(s) 198
AgsI TTSAA 3 cut(s) 143, 206, 216
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 4 cut(s) 32, 107, 156, 209
AluI AGCT 4 cut(s) 32, 107, 156, 209
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 1 cut(s) 101
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 290
AvrII CCTAGG 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 200
BlnI CCTAGG 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 3 cut(s) 103, 174, 319
Bpu10I CCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 4 cut(s) 69, 94, 189, 298
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 73
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 289
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 262, 282
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 262, 282
BssT1I CCWWGG 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 4 cut(s) 69, 94, 189, 298
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 265, 285
BstMBI GATC 2 cut(s) 262, 282
BstMWI GCNNNNNNNGC 3 cut(s) 91, 100, 363
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 4 cut(s) 69, 94, 189, 298
BtsIMutI CAGTG 2 cut(s) 80, 368
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 47
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 338
DpnI GATC 2 cut(s) 264, 284
DpnII GATC 2 cut(s) 262, 282
DraI TTTAAA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 98
Eco47III AGCGCT 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 50
FaiI YATR 9 cut(s) 48, 83, 117, 181, 239, 261, 350, 383, 385
FatI CATG 1 cut(s) 46
FauNDI CATATG 1 cut(s) 383
FokI GGATG 4 cut(s) 56, 81, 196, 305
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 256, 345
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 2 cut(s) 256, 345
HpyAV CCTTC 1 cut(s) 368
HpyCH4V TGCA 5 cut(s) 16, 78, 85, 276, 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 100, 363
HpyF3I CTNAG 1 cut(s) 338
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 262, 282
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 8 cut(s) 2, 71, 86, 113, 117, 150, 256, 302
LweI GCATC 3 cut(s) 103, 174, 319
MaeI CTAG 1 cut(s) 99
MalI GATC 2 cut(s) 264, 284
MboI GATC 2 cut(s) 262, 282
MboII GAAGA 1 cut(s) 292
MfeI CAATTG 1 cut(s) 318
MluCI AATT 3 cut(s) 144, 242, 318
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 4 cut(s) 13, 77, 84, 333
MseI TTAA 3 cut(s) 192, 249, 311
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 91, 100, 363
NciI CCSGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 383
NdeII GATC 2 cut(s) 262, 282
NlaIII CATG 1 cut(s) 50
OliI CACNNNNGTG 1 cut(s) 32
PfeI GAWTC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 3 cut(s) 192, 249, 311
Sau3AI GATC 2 cut(s) 262, 282
ScrFI CCNGG 1 cut(s) 290
SetI ASST 8 cut(s) 34, 69, 109, 158, 211, 275, 344, 372
SfaNI GCATC 3 cut(s) 103, 174, 319
SfcI CTRYAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 3 cut(s) 144, 242, 318
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 98
TasI AATT 3 cut(s) 144, 242, 318
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 3 cut(s) 192, 249, 311
Tru9I TTAA 3 cut(s) 192, 249, 311
TscAI CASTG 2 cut(s) 80, 368
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 2 cut(s) 80, 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.