RLG00000011568
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018534
Physical Location & Seq
Forward (+)
10580445 .. 10581937
1493 bp
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UTR
Exon/CDS
Intron
RLM00000011568

Sequence Viewer

Length: 438 bp
ATGCTTCACGCCAGCCCTAGCGCCGGCTTCAACACGAATGGAGAGGCAGTCTTGCAGACCAAGGGGTTGGAGGAATCCACAGCTGTGTCTTACTCACATGGCTGTACTTATCTTGACCTCATCCAGTGCAATATGCAGGGGAGGCATCCTAGGCCAGCTTTAGAATATGAGAAATCACAGGAAAAGCCTGTTGAAATTGGCTCAAGCTCTTTGACAACTCCAAAATCCCTATGGATGCCATTTAAAGCGCTATTTGAAGCTATTTCAAAAGAAGTTGCTCCAAAAGATATGAAATTGGTTAATGTTCACTATGATCTATTCAGGTGCAAGAAGATCAGCCGGGATGGTTTTATTCAGAAGTTAAGAGCAATTGTTGGAGATGCGTTGCTGAGGTCAACCATAATGAGCCTTCAGTGCAAGGTAATGTTGTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

146

Amino Acids

16.15

Weight (kDa)

8.91

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 74 - 138 8.6e-27 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018534)

Species Orthologous Gene IDs
pyrus_communis pycom07g04710
rosa_chinensis RchiOBHm_Chr2g0176171
rosa_laevigata RLG00000011568 RLG00000013827 RLG00000018612 RLG00000026517 RLG00000032416 RLG00000033785
rosa_multiflora Rmu_sc0006800.1_g000008
rosa_roxburghii Rroxscaffold_7G00196410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 1 cut(s) 106
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 4 cut(s) 31, 194, 257, 267
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 4 cut(s) 83, 158, 207, 260
AluI AGCT 4 cut(s) 83, 158, 207, 260
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 149
AspLEI GCGC 2 cut(s) 23, 250
AsuC2I CCSGG 1 cut(s) 341
AvrII CCTAGG 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 389
BccI CCATC 1 cut(s) 338
BcnI CCSGG 1 cut(s) 341
BfaI CTAG 2 cut(s) 18, 150
BfoI RGCGCY 2 cut(s) 24, 251
BlnI CCTAGG 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 154, 225, 370
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 60, 149
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 60, 149
BseGI GGATG 4 cut(s) 120, 145, 240, 349
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 124
BshFI GGCC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 24, 340
BslI CCNNNNNNNGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 313, 333
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 60, 149
BssMI GATC 2 cut(s) 313, 333
BssT1I CCWWGG 2 cut(s) 60, 149
BstC8I GCNNGC 3 cut(s) 13, 25, 156
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 4 cut(s) 120, 145, 240, 349
BstH2I RGCGCY 2 cut(s) 24, 251
BstHHI GCGC 2 cut(s) 23, 250
BstKTI GATC 2 cut(s) 316, 336
BstMBI GATC 2 cut(s) 313, 333
BstMWI GCNNNNNNNGC 3 cut(s) 142, 151, 414
BstSCI CCNGG 1 cut(s) 339
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 4 cut(s) 120, 145, 240, 349
BtsIMutI CAGTG 2 cut(s) 131, 419
Cac8I GCNNGC 3 cut(s) 13, 25, 156
CfoI GCGC 2 cut(s) 23, 250
Cfr10I RCCGGY 1 cut(s) 23
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 98
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 389
DpnI GATC 2 cut(s) 315, 335
DpnII GATC 2 cut(s) 313, 333
DraI TTTAAA 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 60, 149
Eco47III AGCGCT 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 395
EcoT14I CCWWGG 2 cut(s) 60, 149
ErhI CCWWGG 2 cut(s) 60, 149
FaeI CATG 1 cut(s) 101
FaiI YATR 9 cut(s) 99, 134, 168, 232, 290, 312, 401, 434, 436
FatI CATG 1 cut(s) 97
FauNDI CATATG 1 cut(s) 434
FokI GGATG 4 cut(s) 107, 132, 247, 356
FspBI CTAG 2 cut(s) 18, 150
GlaI GCGC 2 cut(s) 22, 249
HaeII RGCGCY 2 cut(s) 24, 251
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 24, 340
HhaI GCGC 2 cut(s) 23, 250
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 2 cut(s) 21, 248
HinP1I GCGC 2 cut(s) 21, 248
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 24, 340
Hpy166II GTNNAC 2 cut(s) 307, 396
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 307, 396
HpyAV CCTTC 1 cut(s) 419
HpyCH4V TGCA 5 cut(s) 55, 129, 136, 327, 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 151, 414
HpyF3I CTNAG 1 cut(s) 389
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 2 cut(s) 21, 248
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 313, 333
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 25, 37, 122, 137, 164, 168, 201, 307, 353
LweI GCATC 3 cut(s) 154, 225, 370
MaeI CTAG 2 cut(s) 18, 150
MalI GATC 2 cut(s) 315, 335
MboI GATC 2 cut(s) 313, 333
MboII GAAGA 1 cut(s) 343
MfeI CAATTG 1 cut(s) 369
MluCI AATT 3 cut(s) 195, 293, 369
MmeI TCCRAC 2 cut(s) 48, 355
MnlI CCTC 5 cut(s) 37, 64, 128, 135, 384
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 3 cut(s) 243, 300, 362
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 24, 340
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 142, 151, 414
NaeI GCCGGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 341
NdeI CATATG 1 cut(s) 434
NdeII GATC 2 cut(s) 313, 333
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 3 cut(s) 243, 300, 362
Sau3AI GATC 2 cut(s) 313, 333
ScrFI CCNGG 1 cut(s) 341
SetI ASST 8 cut(s) 85, 120, 160, 209, 262, 326, 395, 423
SfaNI GCATC 3 cut(s) 154, 225, 370
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 195, 293, 369
SspMI CTAG 2 cut(s) 18, 150
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 2 cut(s) 60, 149
TasI AATT 3 cut(s) 195, 293, 369
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 243, 300, 362
Tru9I TTAA 3 cut(s) 243, 300, 362
TscAI CASTG 2 cut(s) 131, 419
TspDTI ATGAA 1 cut(s) 305
TspRI CASTG 2 cut(s) 131, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 2 cut(s) 18, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.