RLG00000032416
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018534
Physical Location & Seq
Forward (+)
14967310 .. 14968804
1495 bp
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UTR
Exon/CDS
Intron
RLM00000032416

Sequence Viewer

Length: 336 bp
ATGGCTGGGAGGCATCCTAGGCCAGCTTTAGAATATGAGAAATCACAGGAAAAGCCTGTTGAAATTGGCTCAAGCTCTTTGACAACTCCAAAATCCCTATGGATGCCATTTAAAGCGCTATTTGAAGCTATTTCAAAAGAAGTTGCTCCAAAAGATATGAAATTGGTTAATGTTCACTATGATCTATTCAGGTGCAAGAAGATCAGCCGGGATGGTTTTATTCAGAAGTTAAGAGCAATTGTTGGAGATGCGTTGCTGAGGTCAACCATAATGAGCCTTCAGTGCAAGGATCTAGCTTTCATTGGATTTATGCCTTTAACCGGATTTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

9.55

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 30 - 94 4.3e-27 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018534)

Species Orthologous Gene IDs
pyrus_communis pycom07g04710
rosa_chinensis RchiOBHm_Chr2g0176171
rosa_laevigata RLG00000011568 RLG00000013827 RLG00000018612 RLG00000026517 RLG00000032416 RLG00000033785
rosa_multiflora Rmu_sc0006800.1_g000008
rosa_roxburghii Rroxscaffold_7G00196410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 3 cut(s) 62, 125, 135
AluBI AGCT 4 cut(s) 26, 75, 128, 296
AluI AGCT 4 cut(s) 26, 75, 128, 296
AlwI GGATC 1 cut(s) 297
Aor51HI AGCGCT 1 cut(s) 117
AoxI GGCC 1 cut(s) 20
AspA2I CCTAGG 1 cut(s) 17
AspLEI GCGC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 209
AvrII CCTAGG 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 209
BfaI CTAG 2 cut(s) 18, 293
BfoI RGCGCY 1 cut(s) 119
BlnI CCTAGG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 3 cut(s) 22, 93, 238
Bpu10I CCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 3 cut(s) 13, 108, 217
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 2 cut(s) 208, 321
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 181, 201, 289
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 249
BspPI GGATC 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 181, 201, 289
BssT1I CCWWGG 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 3 cut(s) 13, 108, 217
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 184, 204, 292
BstMBI GATC 3 cut(s) 181, 201, 289
BstMWI GCNNNNNNNGC 2 cut(s) 19, 282
BstSCI CCNGG 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 13, 108, 217
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 257
DpnI GATC 3 cut(s) 183, 203, 291
DpnII GATC 3 cut(s) 181, 201, 289
DraI TTTAAA 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 17
Eco47III AGCGCT 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaiI YATR 6 cut(s) 36, 100, 158, 180, 269, 311
FokI GGATG 2 cut(s) 115, 224
FspBI CTAG 2 cut(s) 18, 293
GlaI GCGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 22
HapII CCGG 2 cut(s) 208, 321
HhaI GCGC 1 cut(s) 118
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HpaII CCGG 2 cut(s) 208, 321
Hpy166II GTNNAC 2 cut(s) 175, 264
Hpy188I TCNGA 1 cut(s) 225
Hpy8I GTNNAC 2 cut(s) 175, 264
HpyAV CCTTC 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 195, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 282
HpyF3I CTNAG 1 cut(s) 257
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 3 cut(s) 181, 201, 289
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 32, 36, 69, 175, 221
LweI GCATC 3 cut(s) 22, 93, 238
MaeI CTAG 2 cut(s) 18, 293
MalI GATC 3 cut(s) 183, 203, 291
MboI GATC 3 cut(s) 181, 201, 289
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 289
MluCI AATT 3 cut(s) 63, 161, 237
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 3, 252
MseI TTAA 4 cut(s) 111, 168, 230, 317
MspI CCGG 2 cut(s) 208, 321
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 19, 282
NciI CCSGG 1 cut(s) 209
NdeII GATC 3 cut(s) 181, 201, 289
PspFI CCCAGC 1 cut(s) 5
PsuI RGATCY 1 cut(s) 289
SaqAI TTAA 4 cut(s) 111, 168, 230, 317
Sau3AI GATC 3 cut(s) 181, 201, 289
ScrFI CCNGG 1 cut(s) 209
SetI ASST 6 cut(s) 28, 77, 130, 194, 263, 298
SfaNI GCATC 3 cut(s) 22, 93, 238
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 3 cut(s) 63, 161, 237
SspMI CTAG 2 cut(s) 18, 293
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 17
TasI AATT 3 cut(s) 63, 161, 237
Tru1I TTAA 4 cut(s) 111, 168, 230, 317
Tru9I TTAA 4 cut(s) 111, 168, 230, 317
TscAI CASTG 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 173, 289
TspRI CASTG 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XmaJI CCTAGG 1 cut(s) 17
XspI CTAG 2 cut(s) 18, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.