Rroxscaffold_7G00196410
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018534
Physical Location & Seq
Forward (+)
39328275 .. 39333826
5552 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00196410.1

Sequence Viewer

Length: 471 bp
ATGTACTCGTCGGCCTTTTATGCTACTTGTACTGCGGGGAGGAATCCACGGTTGTGTCTTACTCACATGGCTGTACTTATCTTGACCTCATCCGGTGCAATATGCAGGCATCCTAGGCCAGCTTTGGAATATGAGAAATCACAGGAAAAGCCTGTTCAAATTGGCTCAAGCTCTTTGACAACTCCAAAATCACCATGGATGCCATTTAAAGCGCTATTTGAAGCTATTTCAAAAGAAGTTGCTCCGAAAGATATGAAATTGGTTAATGTTCACTATGATCTATTCGGGCCACAAAGACATCGGTCAAAATTTAGTTTTACATCGGTTCGGACTGATGTAAATGAACAGAATTCTAGTAGTGTCCGTTCATTAATGAACCTTGTGAGATTACTCACCTCGAAACTCCCGTTGCGCCTTCAATACCGAACACGCCTTCAATACCGAACAAGACAACCCAACCACCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

156

Amino Acids

17.87

Weight (kDa)

10.32

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 62 - 95 2e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018534)

Species Orthologous Gene IDs
pyrus_communis pycom07g04710
rosa_chinensis RchiOBHm_Chr2g0176171
rosa_laevigata RLG00000011568 RLG00000013827 RLG00000018612 RLG00000026517 RLG00000032416 RLG00000033785
rosa_multiflora Rmu_sc0006800.1_g000008
rosa_roxburghii Rroxscaffold_7G00196410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AcsI RAATTY 2 cut(s) 308, 349
AfaI GTAC 3 cut(s) 5, 31, 75
AfeI AGCGCT 1 cut(s) 213
AgsI TTSAA 5 cut(s) 158, 221, 231, 419, 437
AleI CACNNNNGTG 1 cut(s) 52
AluBI AGCT 3 cut(s) 122, 171, 224
AluI AGCT 3 cut(s) 122, 171, 224
Aor51HI AGCGCT 1 cut(s) 213
AoxI GGCC 3 cut(s) 12, 116, 287
ApoI RAATTY 2 cut(s) 308, 349
AseI ATTAAT 1 cut(s) 371
AspA2I CCTAGG 1 cut(s) 113
AspLEI GCGC 2 cut(s) 214, 414
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 183, 385
AvrII CCTAGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 114, 354
BfoI RGCGCY 1 cut(s) 215
BlnI CCTAGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 287
BmsI GCATC 2 cut(s) 118, 189
BoxI GACNNNNGTC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 47, 113, 194
BsaWI WCCGGW 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 47, 113, 194
BseGI GGATG 3 cut(s) 89, 109, 204
BshFI GGCC 3 cut(s) 14, 118, 289
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 3 cut(s) 14, 118, 289
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 35
BspANI GGCC 3 cut(s) 14, 118, 289
BssECI CCNNGG 3 cut(s) 47, 113, 194
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 113, 194
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 107, 120
BstDSI CCRYGG 2 cut(s) 47, 194
BstF5I GGATG 3 cut(s) 89, 109, 204
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 414
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 20, 115
BstPAI GACNNNNGTC 1 cut(s) 301
BsuRI GGCC 3 cut(s) 14, 118, 289
BtgI CCRYGG 2 cut(s) 47, 194
BtsCI GGATG 3 cut(s) 89, 109, 204
Cac8I GCNNGC 2 cut(s) 107, 120
CfoI GCGC 2 cut(s) 214, 414
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 3 cut(s) 4, 30, 74
CviAII CATG 2 cut(s) 67, 195
CviJI RGCY 9 cut(s) 14, 71, 118, 122, 151, 165, 171, 224, 289
CviKI_1 RGCY 9 cut(s) 14, 71, 118, 122, 151, 165, 171, 224, 289
CviQI GTAC 3 cut(s) 4, 30, 74
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 113, 194
Eco47III AGCGCT 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 113, 194
ErhI CCWWGG 2 cut(s) 113, 194
FaeI CATG 2 cut(s) 70, 198
FaiI YATR 7 cut(s) 21, 68, 103, 132, 196, 254, 276
FatI CATG 2 cut(s) 66, 194
FauI CCCGC 1 cut(s) 28
FokI GGATG 3 cut(s) 76, 96, 211
FspBI CTAG 2 cut(s) 114, 354
GlaI GCGC 2 cut(s) 213, 413
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 14, 118, 289
HapII CCGG 1 cut(s) 93
HhaI GCGC 2 cut(s) 214, 414
Hin1II CATG 2 cut(s) 70, 198
Hin6I GCGC 2 cut(s) 212, 412
HinP1I GCGC 2 cut(s) 212, 412
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 183, 385
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 246, 330
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 425, 443
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 98, 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 115
Hsp92II CATG 2 cut(s) 70, 198
HspAI GCGC 2 cut(s) 212, 412
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 91, 106, 128, 132, 165
LweI GCATC 2 cut(s) 118, 189
MaeI CTAG 2 cut(s) 114, 354
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MluCI AATT 4 cut(s) 159, 257, 308, 349
MnlI CCTC 3 cut(s) 33, 97, 406
MseI TTAA 3 cut(s) 207, 264, 371
MslI CAYNNNNRTG 1 cut(s) 52
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 20, 115
NcoI CCATGG 1 cut(s) 194
NdeII GATC 1 cut(s) 277
NlaIII CATG 2 cut(s) 70, 198
OliI CACNNNNGTG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PfeI GAWTC 1 cut(s) 43
PshAI GACNNNNGTC 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 371
PspPI GGNCC 1 cut(s) 287
PsrI GAACNNNNNNTAC 2 cut(s) 349, 381
RsaI GTAC 3 cut(s) 5, 31, 75
RsaNI GTAC 3 cut(s) 4, 30, 74
RseI CAYNNNNRTG 1 cut(s) 52
SaqAI TTAA 3 cut(s) 207, 264, 371
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 287
SetI ASST 6 cut(s) 89, 124, 173, 226, 381, 398
SfaNI GCATC 2 cut(s) 118, 189
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 159, 257, 308, 349
SsiI CCGC 1 cut(s) 35
SspMI CTAG 2 cut(s) 114, 354
StyI CCWWGG 2 cut(s) 113, 194
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 398
TaqII GACCGA 1 cut(s) 291
TasI AATT 4 cut(s) 159, 257, 308, 349
TatI WGTACW 3 cut(s) 3, 29, 73
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 207, 264, 371
Tru9I TTAA 3 cut(s) 207, 264, 371
TspDTI ATGAA 4 cut(s) 269, 357, 357, 389
TspGWI ACGGA 1 cut(s) 353
VspI ATTAAT 1 cut(s) 371
XapI RAATTY 2 cut(s) 308, 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 2 cut(s) 114, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.