RchiOBHm_Chr2g0176451

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
88255957 .. 88259519
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54345

Sequence Viewer

Length: 1455 bp
ATGAGAGGTCAGAAGGGAGGGTTGAATAGCAGCAGCAGCAGCAGGCGACCCAGCACCGTTCTGTACCTGGTTTGCGCTGCCGCATTCTTCTCTCTCCTCGTCTTCGCCATCCAGACCTCTTTCTTCGCTCAATCTGATTCCTCTTCCTCTTCAGTTAAGTTAGATCTCAATACTGAGCAAGATATTCGCACTTTATCCCAATTTCAGTCTACTGTGCAGCAATGCGTGGCAAACAGAGGGCTTGGTCTTACTGCAGATATTGTTGACCACTGCAATCTGATTCTCAAGTATCCACAAGGAACTAACAGCACCTGGTACAACGCGCAGTTTAAAGTTTTTGAACCATTACAGTACAAGTTCAATGTTTGTGAGGCACTCTTATTGTGGGAGCAGTACCGTAACATGACTACAGTATTGACAAGGGAGTATCTAGATGTTCGCCCTAAAGGATGGGAAGACTACGCACCACAAAGGATAGCGCAATTGGGAACCAAAAATTGCTACAATAAGACAATTTGTGAGGAACACCTTAATTTGATACTGCCGGCAAAGCCACCTTTCCATCCTCGCCAATTCCGTACTTGTGCAGTTGTTGGAAATTCGGGAGATCTTTTGAAAACAGAGTTTGGAAAAGAAATTGATGCCCATGATGCTGTCATAAGAGACAATGAGGCTCCTGTTAATGAGAAATATGCCAAGTATGTTGGCCTCAAGAGGGATTTTCGCCTTGTTGTGAGGGGTGCTGCTCGTAACATGGTTGCCATTCTAAATGGGTCTGATGATGAGGTACTCATAATCAAGAGTGTTACACATAAAGACTTCAATGCAATGATCAAGAGTATTCCAAATCCAGTGTATCTTTTTCAAGGTATTGTGCTCCGCAGAGGTGCCAAAGGAACTGGAATGAAATCCATAGAACTAGCACTATCTATGTGCGACATTGTTGACATGTATGGTTTCACTGTTGATCCTGGCTATACTGAATGGACACGTTACTTCTCTACACCTAGGAAAGGGCACAATCCACTTCAAGGAAGGGCATACTACCAGCTCCTAGAGTGCCTTGGTGTCATCAGAATTCATTCTCCAATGAGATCTAAGAGGAAGCAAGGCTGGTCAGATATACCTAGTCGAGAAATGATAGGCAGAGCTCATGCAGCAGCCTTGCGTTTAAAGAGGGGTCAAGATGGTGATTTGGGACAGTTTGGTAGTTGTAAGGTGTCGGGTAATGTGGACCCTGACAAAATTGGGCCTGTCTCAGGATCTGCAGACATGAGTGATGTAAGAAAGTCTTCAAATTACAGTAAGTGGGAAGTCTTGCCCTTTGAGAGTCTGAGGAAGGAAGCGCAGGACCACTATAATCAAATGGAAGGTGTGTCTCTATACAAAATGGATGGCAACAAGTTAGATGATCTAGTATGTGTGAGGCATTCCTCAAAATCAGCTGTCTACTGA

Protein Analysis

484

Amino Acids

54.43

Weight (kDa)

9.05

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 171 - 278 4.7e-19 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010708)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 887
AccI GTMKAC 2 cut(s) 209, 1449
AccII CGCG 1 cut(s) 323
AciI CCGC 2 cut(s) 81, 880
AclWI GGATC 2 cut(s) 962, 1270
AcsI RAATTY 2 cut(s) 598, 1077
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 6 cut(s) 65, 317, 353, 395, 580, 789
AfiI CCNNNNNNNGG 4 cut(s) 715, 1013, 1031, 1259
AflIII ACRYGT 2 cut(s) 948, 989
AgsI TTSAA 8 cut(s) 25, 341, 361, 616, 823, 866, 1031, 1296
AjnI CCWGG 3 cut(s) 66, 311, 970
AluBI AGCT 3 cut(s) 1051, 1151, 1445
AluI AGCT 3 cut(s) 1051, 1151, 1445
Alw21I GWGCWC 2 cut(s) 879, 1153
Alw26I GTCTC 3 cut(s) 657, 1261, 1383
AlwI GGATC 2 cut(s) 962, 1270
AlwNI CAGNNNCTG 2 cut(s) 312, 1265
AoxI GGCC 2 cut(s) 706, 1250
ApeKI GCWGC 9 cut(s) 30, 33, 36, 39, 77, 217, 743, 1157, 1160
ApoI RAATTY 2 cut(s) 598, 1077
Asp700I GAANNNNTTC 2 cut(s) 1081, 1291
AspA2I CCTAGG 1 cut(s) 1007
AspLEI GCGC 4 cut(s) 77, 325, 481, 1348
AspS9I GGNCC 3 cut(s) 1234, 1250, 1351
AsuHPI GGTGA 1 cut(s) 1202
AvaII GGWCC 2 cut(s) 1234, 1351
AvrII CCTAGG 1 cut(s) 1007
BaeGI GKGCMC 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 1153
BbsI GAAGAC 3 cut(s) 94, 462, 1284
Bbv12I GWGCWC 2 cut(s) 879, 1153
BbvI GCAGC 9 cut(s) 42, 45, 48, 51, 64, 229, 730, 1169, 1172
BccI CCATC 5 cut(s) 116, 444, 570, 1181, 1388
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 3 cut(s) 68, 313, 972
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 1 cut(s) 831
BcoDI GTCTC 3 cut(s) 657, 1261, 1383
BfaI CTAG 6 cut(s) 431, 920, 1008, 1055, 1128, 1415
BfmI CTRYAG 3 cut(s) 252, 408, 1266
BfuI GTATCC 1 cut(s) 300
BglII AGATCT 3 cut(s) 163, 607, 1094
BlnI CCTAGG 1 cut(s) 1007
Bme1390I CCNGG 3 cut(s) 68, 313, 972
Bme18I GGWCC 2 cut(s) 1234, 1351
BmgT120I GGNCC 3 cut(s) 1234, 1250, 1351
BmiI GGNNCC 4 cut(s) 490, 675, 889, 1236
BmrFI CCNGG 3 cut(s) 68, 313, 972
BmsI GCATC 2 cut(s) 631, 640
BpiI GAAGAC 3 cut(s) 94, 462, 1284
BpuEI CTTGAG 2 cut(s) 269, 695
BsaJI CCNNGG 2 cut(s) 1007, 1063
Bsc4I CCNNNNNNNGG 4 cut(s) 715, 1013, 1031, 1259
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 851, 904
Bse3DI GCAATG 2 cut(s) 227, 834
BseBI CCWGG 3 cut(s) 68, 313, 972
BseDI CCNNGG 2 cut(s) 1007, 1063
BseGI GGATG 4 cut(s) 108, 455, 562, 1399
BseLI CCNNNNNNNGG 4 cut(s) 715, 1013, 1031, 1259
BseMI GCAATG 2 cut(s) 227, 834
BseMII CTCAG 3 cut(s) 165, 1272, 1325
BseNI ACTGG 2 cut(s) 851, 904
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 1020
BseXI GCAGC 9 cut(s) 42, 45, 48, 51, 64, 229, 730, 1169, 1172
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 2 cut(s) 236, 606
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 708, 1252
BshNI GGYRCC 1 cut(s) 887
BsiHKAI GWGCWC 2 cut(s) 879, 1153
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 1212
BslI CCNNNNNNNGG 4 cut(s) 715, 1013, 1031, 1259
BsmAI GTCTC 3 cut(s) 657, 1261, 1383
BsmFI GGGAC 1 cut(s) 1212
BsmI GAATGC 2 cut(s) 83, 1429
BsnI GGCC 2 cut(s) 708, 1252
Bsp1286I GDGCHC 3 cut(s) 879, 1020, 1153
Bsp143I GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
BspACI CCGC 2 cut(s) 81, 880
BspANI GGCC 2 cut(s) 708, 1252
BspCNI CTCAG 3 cut(s) 166, 1271, 1326
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 4 cut(s) 490, 675, 889, 1236
BspMAI CTGCAG 2 cut(s) 256, 1270
BspPI GGATC 2 cut(s) 962, 1270
BspT107I GGYRCC 1 cut(s) 887
BsrDI GCAATG 2 cut(s) 227, 834
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 2 cut(s) 851, 904
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 1007, 1063
BssMI GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
BssT1I CCWWGG 2 cut(s) 1007, 1063
Bst2UI CCWGG 3 cut(s) 68, 313, 972
Bst4CI ACNGT 8 cut(s) 58, 214, 351, 398, 412, 964, 1203, 1304
Bst6I CTCTTC 2 cut(s) 148, 154
BstC8I GCNNGC 2 cut(s) 44, 546
BstDEI CTNAG 4 cut(s) 174, 1098, 1258, 1334
BstENI CCTNNNNNAGG 2 cut(s) 1011, 1257
BstF5I GGATG 4 cut(s) 108, 455, 562, 1399
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 4 cut(s) 77, 325, 481, 1348
BstKTI GATC 7 cut(s) 166, 610, 834, 970, 1097, 1265, 1414
BstMAI GTCTC 3 cut(s) 657, 1261, 1383
BstMBI GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
BstMWI GCNNNNNNNGC 5 cut(s) 36, 39, 550, 650, 1157
BstNI CCWGG 3 cut(s) 68, 313, 972
BstNSI RCATGY 1 cut(s) 952
BstSCI CCNGG 3 cut(s) 66, 311, 970
BstSFI CTRYAG 3 cut(s) 252, 408, 1266
BstSLI GKGCMC 1 cut(s) 1020
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 9 cut(s) 42, 45, 48, 51, 64, 229, 730, 1169, 1172
BstV2I GAAGAC 3 cut(s) 94, 462, 1284
BstX2I RGATCY 4 cut(s) 163, 607, 1094, 1262
BstYI RGATCY 4 cut(s) 163, 607, 1094, 1262
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 2 cut(s) 708, 1252
BtsCI GGATG 4 cut(s) 108, 455, 562, 1399
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 3 cut(s) 268, 858, 960
Cac8I GCNNGC 2 cut(s) 44, 546
CaiI CAGNNNCTG 2 cut(s) 312, 1265
CfoI GCGC 4 cut(s) 77, 325, 481, 1348
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 3 cut(s) 1234, 1250, 1351
CsiI ACCWGGT 2 cut(s) 66, 311
Csp6I GTAC 6 cut(s) 64, 316, 352, 394, 579, 788
CviAII CATG 6 cut(s) 403, 647, 754, 949, 1154, 1273
CviQI GTAC 6 cut(s) 64, 316, 352, 394, 579, 788
DdeI CTNAG 4 cut(s) 174, 1098, 1258, 1334
DpnI GATC 7 cut(s) 165, 609, 833, 969, 1096, 1264, 1413
DpnII GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
DraI TTTAAA 2 cut(s) 331, 1173
Eam1104I CTCTTC 2 cut(s) 148, 154
EarI CTCTTC 2 cut(s) 148, 154
Ecl136II GAGCTC 1 cut(s) 1151
Eco130I CCWWGG 2 cut(s) 1007, 1063
Eco24I GRGCYC 1 cut(s) 1153
Eco47I GGWCC 2 cut(s) 1234, 1351
Eco53kI GAGCTC 1 cut(s) 1151
Eco57I CTGAAG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 1151
EcoNI CCTNNNNNAGG 2 cut(s) 1011, 1257
EcoRI GAATTC 1 cut(s) 1077
EcoRII CCWGG 3 cut(s) 66, 311, 970
EcoT14I CCWWGG 2 cut(s) 1007, 1063
EcoT38I GRGCYC 1 cut(s) 1153
ErhI CCWWGG 2 cut(s) 1007, 1063
FaeI CATG 6 cut(s) 406, 650, 757, 952, 1157, 1276
FalI AAGNNNNNCTT 2 cut(s) 1276, 1308
FaqI GGGAC 1 cut(s) 1212
FatI CATG 6 cut(s) 402, 646, 753, 948, 1153, 1272
FbaI TGATCA 1 cut(s) 831
FblI GTMKAC 2 cut(s) 209, 1449
FokI GGATG 4 cut(s) 95, 462, 549, 1406
FriOI GRGCYC 1 cut(s) 1153
FspBI CTAG 6 cut(s) 431, 920, 1008, 1055, 1128, 1415
GlaI GCGC 4 cut(s) 76, 324, 480, 1347
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 708, 1252
HapII CCGG 1 cut(s) 545
HhaI GCGC 4 cut(s) 77, 325, 481, 1348
Hin1II CATG 6 cut(s) 406, 650, 757, 952, 1157, 1276
Hin6I GCGC 4 cut(s) 75, 323, 479, 1346
HinP1I GCGC 4 cut(s) 75, 323, 479, 1346
HincII GTYRAC 2 cut(s) 265, 946
HindII GTYRAC 2 cut(s) 265, 946
HinfI GANTC 3 cut(s) 137, 280, 1330
HpaII CCGG 1 cut(s) 545
HphI GGTGA 1 cut(s) 1202
Hpy166II GTNNAC 5 cut(s) 210, 265, 946, 1234, 1450
Hpy188I TCNGA 7 cut(s) 12, 136, 279, 778, 1076, 1120, 1335
Hpy188III TCNNGA 9 cut(s) 112, 431, 603, 712, 799, 835, 1133, 1184, 1260
Hpy8I GTNNAC 5 cut(s) 210, 265, 946, 1234, 1450
HpyAV CCTTC 4 cut(s) 7, 1029, 1333, 1364
HpyCH4III ACNGT 8 cut(s) 58, 214, 351, 398, 412, 964, 1203, 1304
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 7 cut(s) 217, 254, 273, 587, 827, 1157, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 39, 550, 650, 1157
HpyF3I CTNAG 4 cut(s) 174, 1098, 1258, 1334
HpySE526I ACGT 1 cut(s) 991
Hsp92II CATG 6 cut(s) 406, 650, 757, 952, 1157, 1276
HspAI GCGC 4 cut(s) 75, 323, 479, 1346
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
LmnI GCTCC 4 cut(s) 388, 679, 882, 1056
Lsp1109I GCAGC 9 cut(s) 42, 45, 48, 51, 64, 229, 730, 1169, 1172
LweI GCATC 2 cut(s) 631, 640
MabI ACCWGGT 2 cut(s) 66, 311
MaeI CTAG 6 cut(s) 431, 920, 1008, 1055, 1128, 1415
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 4 cut(s) 398, 749, 805, 992
MalI GATC 7 cut(s) 165, 609, 833, 969, 1096, 1264, 1413
MboI GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
MboII GAAGA 7 cut(s) 79, 94, 115, 135, 141, 467, 1284
MfeI CAATTG 1 cut(s) 482
MflI RGATCY 4 cut(s) 163, 607, 1094, 1262
MhlI GDGCHC 3 cut(s) 879, 1020, 1153
MlyI GAGTC 1 cut(s) 1339
MmeI TCCRAC 1 cut(s) 574
MroNI GCCGGC 1 cut(s) 544
MroXI GAANNNNTTC 2 cut(s) 1081, 1291
MseI TTAA 5 cut(s) 156, 330, 531, 681, 1172
MspA1I CMGCKG 1 cut(s) 1445
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 3 cut(s) 68, 313, 972
MunI CAATTG 1 cut(s) 482
Mva1269I GAATGC 2 cut(s) 83, 1429
MvaI CCWGG 3 cut(s) 68, 313, 972
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 36, 39, 550, 650, 1157
NaeI GCCGGC 1 cut(s) 546
NdeII GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 6 cut(s) 406, 650, 757, 952, 1157, 1276
NlaIV GGNNCC 4 cut(s) 490, 675, 889, 1236
NspI RCATGY 1 cut(s) 952
PciI ACATGT 1 cut(s) 948
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 2 cut(s) 83, 1429
PdiI GCCGGC 1 cut(s) 546
PdmI GAANNNNTTC 2 cut(s) 1081, 1291
PfeI GAWTC 2 cut(s) 137, 280
PleI GAGTC 1 cut(s) 1338
PpsI GAGTC 1 cut(s) 1338
PscI ACATGT 1 cut(s) 948
Psp124BI GAGCTC 1 cut(s) 1153
Psp6I CCWGG 3 cut(s) 66, 311, 970
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 3 cut(s) 66, 311, 970
PspN4I GGNNCC 4 cut(s) 490, 675, 889, 1236
PspPI GGNCC 3 cut(s) 1234, 1250, 1351
PstI CTGCAG 2 cut(s) 256, 1270
PstNI CAGNNNCTG 2 cut(s) 312, 1265
PsuI RGATCY 4 cut(s) 163, 607, 1094, 1262
PvuII CAGCTG 1 cut(s) 1445
RsaI GTAC 6 cut(s) 65, 317, 353, 395, 580, 789
RsaNI GTAC 6 cut(s) 64, 316, 352, 394, 579, 788
SacI GAGCTC 1 cut(s) 1153
SaqAI TTAA 5 cut(s) 156, 330, 531, 681, 1172
Sau3AI GATC 7 cut(s) 163, 607, 831, 967, 1094, 1262, 1411
Sau96I GGNCC 3 cut(s) 1234, 1250, 1351
SchI GAGTC 1 cut(s) 1339
ScrFI CCNGG 3 cut(s) 68, 313, 972
SduI GDGCHC 3 cut(s) 879, 1020, 1153
SexAI ACCWGGT 2 cut(s) 66, 311
SfaNI GCATC 2 cut(s) 631, 640
SfcI CTRYAG 3 cut(s) 252, 408, 1266
SinI GGWCC 2 cut(s) 1234, 1351
SmlI CTYRAG 2 cut(s) 284, 710
SmoI CTYRAG 2 cut(s) 284, 710
SsiI CCGC 2 cut(s) 81, 880
SspMI CTAG 6 cut(s) 431, 920, 1008, 1055, 1128, 1415
SstI GAGCTC 1 cut(s) 1153
StyD4I CCNGG 3 cut(s) 66, 311, 970
StyI CCWWGG 2 cut(s) 1007, 1063
TaaI ACNGT 8 cut(s) 58, 214, 351, 398, 412, 964, 1203, 1304
TaiI ACGT 1 cut(s) 994
TaqI TCGA 1 cut(s) 1132
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 137, 280
Tru1I TTAA 5 cut(s) 156, 330, 531, 681, 1172
Tru9I TTAA 5 cut(s) 156, 330, 531, 681, 1172
TscAI CASTG 3 cut(s) 275, 858, 967
TseI GCWGC 9 cut(s) 30, 33, 36, 39, 77, 217, 743, 1157, 1160
TspDTI ATGAA 2 cut(s) 920, 1070
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 3 cut(s) 275, 858, 967
VpaK11BI GGWCC 2 cut(s) 1234, 1351
XagI CCTNNNNNAGG 2 cut(s) 1011, 1257
XapI RAATTY 2 cut(s) 598, 1077
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 1 cut(s) 952
XmaJI CCTAGG 1 cut(s) 1007
XmiI GTMKAC 2 cut(s) 209, 1449
XmnI GAANNNNTTC 2 cut(s) 1081, 1291
XspI CTAG 6 cut(s) 431, 920, 1008, 1055, 1128, 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.