RLG00000022414

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
83191257 .. 83194347
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022414

Sequence Viewer

Length: 1479 bp
ATGAGAACTCAGAAGGGAGGGTTGAATAGCAGCAGCAGCAGCAGGCGACCCAGCACCGTGCTGTACCTGGTTTGCGCTGCCGCATTCTTCTCTCTCCTCGTCTTCGCCATCCAGTCCTCTTTCTTCGCTCAATCTGATTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTTAGTTAAGTTGGATCTCAATACTCAGCAAGATATTCGCACTTTATCCCAATTTCAGTCTACTGTGCAGCAATGCGTGGCAAACAGAGGGCTTGGTCTTACTGCAGATATTGTTGACCACTGCAATCTGATTCTCAAGTATCCAGAAGGAACTAACAGCACCTGGTATAATGCGCAGTTTAAAGTTTTTGAACCATTACAGTACAAGTTCAATGTTTGTGAGGCACTCTTATTGTGGGAGCAGTACCGTAACATGACTACAGTATTGACAAGGGAGTATCTAGATGTTCGCCCTAAAGGATGGGAAGACTATGCACCACAAAGGATAGCGCAACTGGGAACCAAAAATTGCTACAATAAGACAATTTGTGAGGAACACCTTAATTTGATACTGCCGGCAAAGCCACCTTTCCATCCTCGCCAATTCCGTACATGTGCAGTTGTTGGAAATTCAGGAGATCTTTTGAAAACAGAGTTTGGAAAAGAAATTGATGCCCATGATGCTGTAATAAGAGACAATGAGGCTCCTGTTAATGAGAAATATGCCAAGTATGTTGGTCTCAAGAGGGATTTTCGCCTTGTTGTGAGGGGTGCTGCTCGTAACATGGTTGCCATTCTAAATGGGTCTGATGACGAGGTACTCATAATCAAGAGTGTTACACATAAAGACTTCAATGCAATGATCAAGAGTATTCCAAATCCAGTGTATCTTTTTCAAGGTATTGTGCTCCGCAGAGGTGCCAAAGGAACTGGAATGAAATCCATAGAACTAGCACTATCTATGTGTGACATTGTTGACATGTATGGTTTCACTGTTGATCCTGGCTATACTGAATGGACACGTTACTTCTCTACACCTAGGAAAGGGCACAATCCACTTCAAGGAAGGGCATACTACCAGCTCCTAGAGTGCCTTGGTGTCATCAGAATTCATTCTCCAATGAGATCTAAGAGGAAGCAAGGCTGGTCAGACATACCTAGTCGAGAAATGATAGGCAGAGCTCATGCAGCAGCCTTGCGTTTAAAGAGGGGTCAAGATGGTGATTTGGGACAGTTTGGTAGTTGTAAGGTGTCGGGTAATGTGGACCCTGACAAAATTGGGCCTGTCTCAGGATCTGCAGACATGAGTGATGTAAGAAAGTCTTCAAATTACAGCAAGTGGGAAGTCTTGCCCTTTGAGAGTCTGAGGAAGGAAGCGCAGGACCACTATAATCAAATGGAAGGTGTCTCTGTATACAAAATGGATGGCAACAAGTTAGATGATCTAGTATGTGTGAGGCATTCCTCAAAATCAGCAGTCTACTGA

Protein Analysis

493

Amino Acids

55.17

Weight (kDa)

9.05

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 179 - 286 4.6e-19 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010708)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 911
AccI GTMKAC 3 cut(s) 233, 1407, 1473
AciI CCGC 2 cut(s) 81, 904
AclWI GGATC 3 cut(s) 195, 986, 1294
AcsI RAATTY 2 cut(s) 622, 1101
AfaI GTAC 5 cut(s) 65, 377, 419, 604, 813
AfiI CCNNNNNNNGG 3 cut(s) 1037, 1055, 1283
AflIII ACRYGT 3 cut(s) 605, 972, 1013
AgsI TTSAA 8 cut(s) 25, 365, 385, 640, 847, 890, 1055, 1320
AjnI CCWGG 3 cut(s) 66, 335, 994
AluBI AGCT 2 cut(s) 1075, 1175
AluI AGCT 2 cut(s) 1075, 1175
Alw21I GWGCWC 2 cut(s) 903, 1177
Alw26I GTCTC 4 cut(s) 681, 737, 1285, 1405
AlwI GGATC 3 cut(s) 195, 986, 1294
AlwNI CAGNNNCTG 2 cut(s) 336, 1289
AoxI GGCC 1 cut(s) 1274
ApeKI GCWGC 9 cut(s) 30, 33, 36, 39, 77, 241, 767, 1181, 1184
ApoI RAATTY 2 cut(s) 622, 1101
Asp700I GAANNNNTTC 2 cut(s) 1105, 1315
AspA2I CCTAGG 1 cut(s) 1031
AspLEI GCGC 4 cut(s) 77, 349, 505, 1372
AspS9I GGNCC 3 cut(s) 1258, 1274, 1375
AsuHPI GGTGA 1 cut(s) 1226
AvaII GGWCC 2 cut(s) 1258, 1375
AvrII CCTAGG 1 cut(s) 1031
BaeGI GKGCMC 1 cut(s) 1044
BanI GGYRCC 1 cut(s) 911
BanII GRGCYC 1 cut(s) 1177
BbsI GAAGAC 3 cut(s) 94, 486, 1308
Bbv12I GWGCWC 2 cut(s) 903, 1177
BbvI GCAGC 9 cut(s) 42, 45, 48, 51, 64, 253, 754, 1193, 1196
BccI CCATC 5 cut(s) 116, 468, 594, 1205, 1412
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 3 cut(s) 68, 337, 996
BciVI GTATCC 1 cut(s) 324
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 4 cut(s) 681, 737, 1285, 1405
BfaI CTAG 6 cut(s) 455, 944, 1032, 1079, 1152, 1439
BfmI CTRYAG 3 cut(s) 276, 432, 1290
BfuI GTATCC 1 cut(s) 324
BglII AGATCT 2 cut(s) 631, 1118
BlnI CCTAGG 1 cut(s) 1031
Bme1390I CCNGG 3 cut(s) 68, 337, 996
Bme18I GGWCC 2 cut(s) 1258, 1375
BmgT120I GGNCC 3 cut(s) 1258, 1274, 1375
BmiI GGNNCC 4 cut(s) 514, 699, 913, 1260
BmrFI CCNGG 3 cut(s) 68, 337, 996
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 2 cut(s) 655, 664
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 3 cut(s) 94, 486, 1308
BpuEI CTTGAG 2 cut(s) 293, 719
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 2 cut(s) 1031, 1087
Bsc4I CCNNNNNNNGG 3 cut(s) 1037, 1055, 1283
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 4 cut(s) 112, 513, 875, 928
Bse3DI GCAATG 2 cut(s) 251, 858
BseBI CCWGG 3 cut(s) 68, 337, 996
BseDI CCNNGG 2 cut(s) 1031, 1087
BseGI GGATG 4 cut(s) 108, 479, 586, 1423
BseLI CCNNNNNNNGG 3 cut(s) 1037, 1055, 1283
BseMI GCAATG 2 cut(s) 251, 858
BseMII CTCAG 4 cut(s) 23, 212, 1296, 1349
BseNI ACTGG 4 cut(s) 112, 513, 875, 928
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 9 cut(s) 42, 45, 48, 51, 64, 253, 754, 1193, 1196
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 2 cut(s) 260, 630
BshFI GGCC 1 cut(s) 1276
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 2 cut(s) 903, 1177
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 1236
BslI CCNNNNNNNGG 3 cut(s) 1037, 1055, 1283
BsmAI GTCTC 4 cut(s) 681, 737, 1285, 1405
BsmFI GGGAC 1 cut(s) 1236
BsmI GAATGC 2 cut(s) 83, 1453
BsnI GGCC 1 cut(s) 1276
Bso31I GGTCTC 1 cut(s) 737
Bsp1286I GDGCHC 3 cut(s) 903, 1044, 1177
Bsp143I GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
BspACI CCGC 2 cut(s) 81, 904
BspANI GGCC 1 cut(s) 1276
BspCNI CTCAG 4 cut(s) 22, 211, 1295, 1350
BspLI GGNNCC 4 cut(s) 514, 699, 913, 1260
BspMAI CTGCAG 2 cut(s) 280, 1294
BspPI GGATC 3 cut(s) 195, 986, 1294
BspT107I GGYRCC 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 251, 858
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 4 cut(s) 112, 513, 875, 928
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 1031, 1087
BssMI GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
BssNAI GTATAC 1 cut(s) 1408
BssT1I CCWWGG 2 cut(s) 1031, 1087
Bst1107I GTATAC 1 cut(s) 1408
Bst2UI CCWGG 3 cut(s) 68, 337, 996
Bst4CI ACNGT 7 cut(s) 58, 238, 375, 422, 436, 988, 1227
Bst6I CTCTTC 5 cut(s) 148, 154, 160, 166, 172
BstC8I GCNNGC 2 cut(s) 44, 570
BstDEI CTNAG 5 cut(s) 9, 198, 1122, 1282, 1358
BstENI CCTNNNNNAGG 2 cut(s) 1035, 1281
BstF5I GGATG 4 cut(s) 108, 479, 586, 1423
BstHHI GCGC 4 cut(s) 77, 349, 505, 1372
BstKTI GATC 7 cut(s) 190, 634, 858, 994, 1121, 1289, 1438
BstMAI GTCTC 4 cut(s) 681, 737, 1285, 1405
BstMBI GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
BstMWI GCNNNNNNNGC 5 cut(s) 36, 39, 574, 674, 1181
BstNI CCWGG 3 cut(s) 68, 337, 996
BstNSI RCATGY 2 cut(s) 609, 976
BstSCI CCNGG 3 cut(s) 66, 335, 994
BstSFI CTRYAG 3 cut(s) 276, 432, 1290
BstSLI GKGCMC 1 cut(s) 1044
BstV1I GCAGC 9 cut(s) 42, 45, 48, 51, 64, 253, 754, 1193, 1196
BstV2I GAAGAC 3 cut(s) 94, 486, 1308
BstX2I RGATCY 4 cut(s) 187, 631, 1118, 1286
BstYI RGATCY 4 cut(s) 187, 631, 1118, 1286
BstZ17I GTATAC 1 cut(s) 1408
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 1276
BtsCI GGATG 4 cut(s) 108, 479, 586, 1423
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 292, 882, 984
Cac8I GCNNGC 2 cut(s) 44, 570
CaiI CAGNNNCTG 2 cut(s) 336, 1289
CfoI GCGC 4 cut(s) 77, 349, 505, 1372
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 3 cut(s) 1258, 1274, 1375
CsiI ACCWGGT 2 cut(s) 66, 335
Csp6I GTAC 5 cut(s) 64, 376, 418, 603, 812
CviAII CATG 7 cut(s) 427, 606, 671, 778, 973, 1178, 1297
CviJI RGCY 9 cut(s) 265, 577, 698, 999, 1075, 1137, 1175, 1187, 1276
CviKI_1 RGCY 9 cut(s) 265, 577, 698, 999, 1075, 1137, 1175, 1187, 1276
CviQI GTAC 5 cut(s) 64, 376, 418, 603, 812
DdeI CTNAG 5 cut(s) 9, 198, 1122, 1282, 1358
DpnI GATC 7 cut(s) 189, 633, 857, 993, 1120, 1288, 1437
DpnII GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
DraI TTTAAA 2 cut(s) 355, 1197
Eam1104I CTCTTC 5 cut(s) 148, 154, 160, 166, 172
EarI CTCTTC 5 cut(s) 148, 154, 160, 166, 172
Ecl136II GAGCTC 1 cut(s) 1175
Eco130I CCWWGG 2 cut(s) 1031, 1087
Eco24I GRGCYC 1 cut(s) 1177
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 1258, 1375
Eco53kI GAGCTC 1 cut(s) 1175
EcoICRI GAGCTC 1 cut(s) 1175
EcoNI CCTNNNNNAGG 2 cut(s) 1035, 1281
EcoRI GAATTC 1 cut(s) 1101
EcoRII CCWGG 3 cut(s) 66, 335, 994
EcoT14I CCWWGG 2 cut(s) 1031, 1087
EcoT38I GRGCYC 1 cut(s) 1177
ErhI CCWWGG 2 cut(s) 1031, 1087
FaeI CATG 7 cut(s) 430, 609, 674, 781, 976, 1181, 1300
FalI AAGNNNNNCTT 2 cut(s) 1300, 1332
FaqI GGGAC 1 cut(s) 1236
FatI CATG 7 cut(s) 426, 605, 670, 777, 972, 1177, 1296
FbaI TGATCA 1 cut(s) 855
FblI GTMKAC 3 cut(s) 233, 1407, 1473
FokI GGATG 4 cut(s) 95, 486, 573, 1430
FriOI GRGCYC 1 cut(s) 1177
FspBI CTAG 6 cut(s) 455, 944, 1032, 1079, 1152, 1439
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 4 cut(s) 76, 348, 504, 1371
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 1276
HapII CCGG 1 cut(s) 569
HhaI GCGC 4 cut(s) 77, 349, 505, 1372
Hin1II CATG 7 cut(s) 430, 609, 674, 781, 976, 1181, 1300
Hin6I GCGC 4 cut(s) 75, 347, 503, 1370
HinP1I GCGC 4 cut(s) 75, 347, 503, 1370
HincII GTYRAC 2 cut(s) 289, 970
HindII GTYRAC 2 cut(s) 289, 970
HinfI GANTC 3 cut(s) 137, 304, 1354
HpaII CCGG 1 cut(s) 569
HphI GGTGA 1 cut(s) 1226
Hpy166II GTNNAC 6 cut(s) 234, 289, 970, 1258, 1408, 1474
Hpy188I TCNGA 7 cut(s) 12, 136, 303, 802, 1100, 1144, 1359
Hpy188III TCNNGA 9 cut(s) 317, 455, 627, 736, 823, 859, 1157, 1208, 1284
Hpy8I GTNNAC 6 cut(s) 234, 289, 970, 1258, 1408, 1474
HpyAV CCTTC 5 cut(s) 7, 314, 1053, 1357, 1388
HpyCH4III ACNGT 7 cut(s) 58, 238, 375, 422, 436, 988, 1227
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 8 cut(s) 241, 278, 297, 488, 611, 851, 1181, 1292
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 39, 574, 674, 1181
HpyF3I CTNAG 5 cut(s) 9, 198, 1122, 1282, 1358
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 7 cut(s) 430, 609, 674, 781, 976, 1181, 1300
HspAI GCGC 4 cut(s) 75, 347, 503, 1370
KroI GCCGGC 1 cut(s) 568
KroNI GCCGGC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
LmnI GCTCC 4 cut(s) 412, 703, 906, 1080
Lsp1109I GCAGC 9 cut(s) 42, 45, 48, 51, 64, 253, 754, 1193, 1196
LweI GCATC 2 cut(s) 655, 664
MabI ACCWGGT 2 cut(s) 66, 335
MaeI CTAG 6 cut(s) 455, 944, 1032, 1079, 1152, 1439
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 5 cut(s) 422, 773, 829, 959, 1016
MalI GATC 7 cut(s) 189, 633, 857, 993, 1120, 1288, 1437
MboI GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
MflI RGATCY 4 cut(s) 187, 631, 1118, 1286
MhlI GDGCHC 3 cut(s) 903, 1044, 1177
MlyI GAGTC 1 cut(s) 1363
MmeI TCCRAC 2 cut(s) 165, 598
MroNI GCCGGC 1 cut(s) 568
MroXI GAANNNNTTC 2 cut(s) 1105, 1315
MseI TTAA 5 cut(s) 180, 354, 555, 705, 1196
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 3 cut(s) 68, 337, 996
Mva1269I GAATGC 2 cut(s) 83, 1453
MvaI CCWGG 3 cut(s) 68, 337, 996
MwoI GCNNNNNNNGC 5 cut(s) 36, 39, 574, 674, 1181
NaeI GCCGGC 1 cut(s) 570
NdeII GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
NgoMIV GCCGGC 1 cut(s) 568
NlaIII CATG 7 cut(s) 430, 609, 674, 781, 976, 1181, 1300
NlaIV GGNNCC 4 cut(s) 514, 699, 913, 1260
NmuCI GTSAC 1 cut(s) 959
NsbI TGCGCA 1 cut(s) 348
NspI RCATGY 2 cut(s) 609, 976
PciI ACATGT 2 cut(s) 605, 972
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PctI GAATGC 2 cut(s) 83, 1453
PdiI GCCGGC 1 cut(s) 570
PdmI GAANNNNTTC 2 cut(s) 1105, 1315
PfeI GAWTC 2 cut(s) 137, 304
PleI GAGTC 1 cut(s) 1362
PpsI GAGTC 1 cut(s) 1362
PscI ACATGT 2 cut(s) 605, 972
Psp124BI GAGCTC 1 cut(s) 1177
Psp6I CCWGG 3 cut(s) 66, 335, 994
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 3 cut(s) 66, 335, 994
PspN4I GGNNCC 4 cut(s) 514, 699, 913, 1260
PspPI GGNCC 3 cut(s) 1258, 1274, 1375
PstI CTGCAG 2 cut(s) 280, 1294
PstNI CAGNNNCTG 2 cut(s) 336, 1289
PsuI RGATCY 4 cut(s) 187, 631, 1118, 1286
RsaI GTAC 5 cut(s) 65, 377, 419, 604, 813
RsaNI GTAC 5 cut(s) 64, 376, 418, 603, 812
SacI GAGCTC 1 cut(s) 1177
SaqAI TTAA 5 cut(s) 180, 354, 555, 705, 1196
Sau3AI GATC 7 cut(s) 187, 631, 855, 991, 1118, 1286, 1435
Sau96I GGNCC 3 cut(s) 1258, 1274, 1375
SchI GAGTC 1 cut(s) 1363
ScrFI CCNGG 3 cut(s) 68, 337, 996
SduI GDGCHC 3 cut(s) 903, 1044, 1177
SexAI ACCWGGT 2 cut(s) 66, 335
SfaNI GCATC 2 cut(s) 655, 664
SfcI CTRYAG 3 cut(s) 276, 432, 1290
SinI GGWCC 2 cut(s) 1258, 1375
SmlI CTYRAG 2 cut(s) 308, 734
SmoI CTYRAG 2 cut(s) 308, 734
SsiI CCGC 2 cut(s) 81, 904
SspMI CTAG 6 cut(s) 455, 944, 1032, 1079, 1152, 1439
SstI GAGCTC 1 cut(s) 1177
StyD4I CCNGG 3 cut(s) 66, 335, 994
StyI CCWWGG 2 cut(s) 1031, 1087
TaaI ACNGT 7 cut(s) 58, 238, 375, 422, 436, 988, 1227
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 1 cut(s) 1156
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 137, 304
Tru1I TTAA 5 cut(s) 180, 354, 555, 705, 1196
Tru9I TTAA 5 cut(s) 180, 354, 555, 705, 1196
TscAI CASTG 3 cut(s) 299, 882, 991
TseFI GTSAC 1 cut(s) 959
TseI GCWGC 9 cut(s) 30, 33, 36, 39, 77, 241, 767, 1181, 1184
Tsp45I GTSAC 1 cut(s) 959
TspDTI ATGAA 2 cut(s) 944, 1094
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 3 cut(s) 299, 882, 991
VpaK11BI GGWCC 2 cut(s) 1258, 1375
XagI CCTNNNNNAGG 2 cut(s) 1035, 1281
XapI RAATTY 2 cut(s) 622, 1101
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 2 cut(s) 609, 976
XmaJI CCTAGG 1 cut(s) 1031
XmiI GTMKAC 3 cut(s) 233, 1407, 1473
XmnI GAANNNNTTC 2 cut(s) 1105, 1315
XspI CTAG 6 cut(s) 455, 944, 1032, 1079, 1152, 1439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.