Rw2G055200

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
82673622 .. 82676784
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G055200.1

Sequence Viewer

Length: 1467 bp
ATGAGAGGTCAGAAGGGAGGGTTGAATAGCAGCAGCAGCAGCAGGCGACCCAGCACCGTTCTGTACCTGGTTTGCGCTGCCGCATTCTTCTCTCTCCTCGTCTTCGCCATCCAGACCTCTTTCTTCGCTCAATCTGATTCCTCTTCCTCTTCCTCTTCCTCTTCAGTTAAGTTAGATCTCAATACTCAGCAAGATATTCGCACTTTATCCCAATTTCAGTCCACTGTGCAGCAATGCGTGGCAAACAGAGGGCTTGGTCTTACTGCAGATATTGTTGACCACTGCAATCTGATTCTCAAGTATCCACAAGGAACTAACAGCACCTGGTACAATGCGCAGTTTAAAGTTTTTGAACCTTTACGGTACAAGTTCAATGTTTGTGAGGCACTCTTATTGTGGGAGCAGTACCGTAACATGACTACAGTATTGACAAGGGAGTATCTAGATGTTCGCCCTAAAGGATGGGAAGACTACGCACCACAAAGGATAGCGCAATTGGGAACCAAAAATTGCTACAATAAGACAATTTGTGAGGAACACCTTAATTTGATACTGCCGGCAAAGCCACCTTTCCATCCTCGCCAATTCCGTACATGTGCAGTTGTTGGAAATTCAGGAGATCTTTTGAAAACAGAGTTTGGAAAAGAAATTGATGCCCATGATGCTGTCATAAGAGACAATGAGGCTCCTGTTAATGAGAAATATGCCAAGTATGTTGGCCTCAAGAGGGATTTTCGCCTTGTTGTGAGGGGTGCTGCTCGTAACATGGTTGCCATTCTAAATGGGTCTGATGATGAGGTACTCATAATCAAGAGTGTTACACATAAAGACTTCAATGCAATGATCAAGAGTATTCCAAATCCAGTGTATCTTTTTCAAGGTATTGTGCTCCGCAGAGGTGCCAAAGGAACTGGAATGAAATCCATAGAACTAGCACTATCTATGTGCGACATTGTTGACATGTATGGTTTCACTGTTGATCCTGGCTATACTGAATGGACACGTTACTTCTCTACACCTAGGAAAGGGCACAATCCACTTCAAGGAAGGGCATACTACCAGCTCCTAGAGTGCCTTGGTGTCATCAGAATTCATTCTCCAATGAGATCTAAGAGGAAGCAAGGCTGGTCAGATATACCTAGTCGAGAAATGATAGGCAGAGCTCATGCAGCAGCCTTGCGTTTAAAGAGGGGTCAAGATGGTGATTTGGGACAGTTTGGTAGTTGTAAGGTGTCGGGTAATGTGGACCCTGACAAAATTGGGCCTGTCTCAGGATCTGCAGACATGAGTGATGTAAGAAAGTCTTCAAATTACAGTAAGTGGGAAGTCTTGCCCTTCGAGAGTCTGAGGAAGGAAGCGCAGGACCACTATAATCAAATGGAAGGTGTGTCTCTATACAAAATGGATGGCAACAAGTTAGATGATCTAGTATGTGTGAGGCATTCCTCAAAATCAGCTGTCTACTGA

Protein Analysis

488

Amino Acids

54.8

Weight (kDa)

9.16

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 175 - 282 4.7e-19 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010708)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 899
AccI GTMKAC 1 cut(s) 1461
AciI CCGC 2 cut(s) 81, 892
AclWI GGATC 2 cut(s) 974, 1282
AcsI RAATTY 2 cut(s) 610, 1089
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 6 cut(s) 65, 329, 365, 407, 592, 801
AfiI CCNNNNNNNGG 4 cut(s) 727, 1025, 1043, 1271
AflIII ACRYGT 3 cut(s) 593, 960, 1001
AgsI TTSAA 8 cut(s) 25, 353, 373, 628, 835, 878, 1043, 1308
AjnI CCWGG 3 cut(s) 66, 323, 982
AluBI AGCT 3 cut(s) 1063, 1163, 1457
AluI AGCT 3 cut(s) 1063, 1163, 1457
Alw21I GWGCWC 2 cut(s) 891, 1165
Alw26I GTCTC 3 cut(s) 669, 1273, 1395
AlwI GGATC 2 cut(s) 974, 1282
AlwNI CAGNNNCTG 2 cut(s) 324, 1277
AoxI GGCC 2 cut(s) 718, 1262
ApeKI GCWGC 9 cut(s) 30, 33, 36, 39, 77, 229, 755, 1169, 1172
ApoI RAATTY 2 cut(s) 610, 1089
Asp700I GAANNNNTTC 2 cut(s) 1093, 1303
AspA2I CCTAGG 1 cut(s) 1019
AspLEI GCGC 4 cut(s) 77, 337, 493, 1360
AspS9I GGNCC 3 cut(s) 1246, 1262, 1363
AsuHPI GGTGA 1 cut(s) 1214
AvaII GGWCC 2 cut(s) 1246, 1363
AvrII CCTAGG 1 cut(s) 1019
BaeGI GKGCMC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 1 cut(s) 1165
BbsI GAAGAC 3 cut(s) 94, 474, 1296
Bbv12I GWGCWC 2 cut(s) 891, 1165
BbvI GCAGC 9 cut(s) 42, 45, 48, 51, 64, 241, 742, 1181, 1184
BccI CCATC 5 cut(s) 116, 456, 582, 1193, 1400
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 3 cut(s) 68, 325, 984
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 669, 1273, 1395
BfaI CTAG 6 cut(s) 443, 932, 1020, 1067, 1140, 1427
BfmI CTRYAG 3 cut(s) 264, 420, 1278
BfuI GTATCC 1 cut(s) 312
BglII AGATCT 3 cut(s) 175, 619, 1106
BlnI CCTAGG 1 cut(s) 1019
Bme1390I CCNGG 3 cut(s) 68, 325, 984
Bme18I GGWCC 2 cut(s) 1246, 1363
BmgT120I GGNCC 3 cut(s) 1246, 1262, 1363
BmiI GGNNCC 4 cut(s) 502, 687, 901, 1248
BmrFI CCNGG 3 cut(s) 68, 325, 984
BmsI GCATC 2 cut(s) 643, 652
BpiI GAAGAC 3 cut(s) 94, 474, 1296
BpuEI CTTGAG 2 cut(s) 281, 707
BsaJI CCNNGG 2 cut(s) 1019, 1075
Bsc4I CCNNNNNNNGG 4 cut(s) 727, 1025, 1043, 1271
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 863, 916
Bse3DI GCAATG 2 cut(s) 239, 846
BseBI CCWGG 3 cut(s) 68, 325, 984
BseDI CCNNGG 2 cut(s) 1019, 1075
BseGI GGATG 4 cut(s) 108, 467, 574, 1411
BseLI CCNNNNNNNGG 4 cut(s) 727, 1025, 1043, 1271
BseMI GCAATG 2 cut(s) 239, 846
BseMII CTCAG 3 cut(s) 200, 1284, 1337
BseNI ACTGG 2 cut(s) 863, 916
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 1032
BseXI GCAGC 9 cut(s) 42, 45, 48, 51, 64, 241, 742, 1181, 1184
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 2 cut(s) 248, 618
BshFI GGCC 2 cut(s) 720, 1264
BshNI GGYRCC 1 cut(s) 899
BsiHKAI GWGCWC 2 cut(s) 891, 1165
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 1224
BslI CCNNNNNNNGG 4 cut(s) 727, 1025, 1043, 1271
BsmAI GTCTC 3 cut(s) 669, 1273, 1395
BsmFI GGGAC 1 cut(s) 1224
BsmI GAATGC 2 cut(s) 83, 1441
BsnI GGCC 2 cut(s) 720, 1264
Bsp1286I GDGCHC 3 cut(s) 891, 1032, 1165
Bsp143I GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
BspACI CCGC 2 cut(s) 81, 892
BspANI GGCC 2 cut(s) 720, 1264
BspCNI CTCAG 3 cut(s) 199, 1283, 1338
BspLI GGNNCC 4 cut(s) 502, 687, 901, 1248
BspMAI CTGCAG 2 cut(s) 268, 1282
BspPI GGATC 2 cut(s) 974, 1282
BspT107I GGYRCC 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 239, 846
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 2 cut(s) 863, 916
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 2 cut(s) 1019, 1075
BssMI GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
BssT1I CCWWGG 2 cut(s) 1019, 1075
Bst2UI CCWGG 3 cut(s) 68, 325, 984
Bst4CI ACNGT 8 cut(s) 58, 226, 363, 410, 424, 976, 1215, 1316
Bst6I CTCTTC 4 cut(s) 148, 154, 160, 166
BstC8I GCNNGC 2 cut(s) 44, 558
BstDEI CTNAG 4 cut(s) 186, 1110, 1270, 1346
BstENI CCTNNNNNAGG 2 cut(s) 1023, 1269
BstF5I GGATG 4 cut(s) 108, 467, 574, 1411
BstHHI GCGC 4 cut(s) 77, 337, 493, 1360
BstKTI GATC 7 cut(s) 178, 622, 846, 982, 1109, 1277, 1426
BstMAI GTCTC 3 cut(s) 669, 1273, 1395
BstMBI GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
BstMWI GCNNNNNNNGC 5 cut(s) 36, 39, 562, 662, 1169
BstNI CCWGG 3 cut(s) 68, 325, 984
BstNSI RCATGY 2 cut(s) 597, 964
BstSCI CCNGG 3 cut(s) 66, 323, 982
BstSFI CTRYAG 3 cut(s) 264, 420, 1278
BstSLI GKGCMC 1 cut(s) 1032
BstV1I GCAGC 9 cut(s) 42, 45, 48, 51, 64, 241, 742, 1181, 1184
BstV2I GAAGAC 3 cut(s) 94, 474, 1296
BstX2I RGATCY 4 cut(s) 175, 619, 1106, 1274
BstYI RGATCY 4 cut(s) 175, 619, 1106, 1274
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 720, 1264
BtsCI GGATG 4 cut(s) 108, 467, 574, 1411
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 4 cut(s) 222, 280, 870, 972
Cac8I GCNNGC 2 cut(s) 44, 558
CaiI CAGNNNCTG 2 cut(s) 324, 1277
CfoI GCGC 4 cut(s) 77, 337, 493, 1360
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 3 cut(s) 1246, 1262, 1363
CsiI ACCWGGT 2 cut(s) 66, 323
Csp6I GTAC 6 cut(s) 64, 328, 364, 406, 591, 800
CviAII CATG 7 cut(s) 415, 594, 659, 766, 961, 1166, 1285
CviQI GTAC 6 cut(s) 64, 328, 364, 406, 591, 800
DdeI CTNAG 4 cut(s) 186, 1110, 1270, 1346
DpnI GATC 7 cut(s) 177, 621, 845, 981, 1108, 1276, 1425
DpnII GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
DraI TTTAAA 2 cut(s) 343, 1185
Eam1104I CTCTTC 4 cut(s) 148, 154, 160, 166
EarI CTCTTC 4 cut(s) 148, 154, 160, 166
Ecl136II GAGCTC 1 cut(s) 1163
Eco130I CCWWGG 2 cut(s) 1019, 1075
Eco24I GRGCYC 1 cut(s) 1165
Eco47I GGWCC 2 cut(s) 1246, 1363
Eco53kI GAGCTC 1 cut(s) 1163
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 1163
EcoNI CCTNNNNNAGG 2 cut(s) 1023, 1269
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 3 cut(s) 66, 323, 982
EcoT14I CCWWGG 2 cut(s) 1019, 1075
EcoT38I GRGCYC 1 cut(s) 1165
ErhI CCWWGG 2 cut(s) 1019, 1075
FaeI CATG 7 cut(s) 418, 597, 662, 769, 964, 1169, 1288
FalI AAGNNNNNCTT 2 cut(s) 1288, 1320
FaqI GGGAC 1 cut(s) 1224
FatI CATG 7 cut(s) 414, 593, 658, 765, 960, 1165, 1284
FbaI TGATCA 1 cut(s) 843
FblI GTMKAC 1 cut(s) 1461
FokI GGATG 4 cut(s) 95, 474, 561, 1418
FriOI GRGCYC 1 cut(s) 1165
FspBI CTAG 6 cut(s) 443, 932, 1020, 1067, 1140, 1427
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 4 cut(s) 76, 336, 492, 1359
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 720, 1264
HapII CCGG 1 cut(s) 557
HhaI GCGC 4 cut(s) 77, 337, 493, 1360
Hin1II CATG 7 cut(s) 418, 597, 662, 769, 964, 1169, 1288
Hin6I GCGC 4 cut(s) 75, 335, 491, 1358
HinP1I GCGC 4 cut(s) 75, 335, 491, 1358
HincII GTYRAC 2 cut(s) 277, 958
HindII GTYRAC 2 cut(s) 277, 958
HinfI GANTC 3 cut(s) 137, 292, 1342
HpaII CCGG 1 cut(s) 557
HphI GGTGA 1 cut(s) 1214
Hpy166II GTNNAC 5 cut(s) 222, 277, 958, 1246, 1462
Hpy188I TCNGA 7 cut(s) 12, 136, 291, 790, 1088, 1132, 1347
Hpy8I GTNNAC 5 cut(s) 222, 277, 958, 1246, 1462
HpyAV CCTTC 5 cut(s) 7, 1041, 1345, 1345, 1376
HpyCH4III ACNGT 8 cut(s) 58, 226, 363, 410, 424, 976, 1215, 1316
HpyCH4IV ACGT 1 cut(s) 1003
HpyCH4V TGCA 7 cut(s) 229, 266, 285, 599, 839, 1169, 1280
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 39, 562, 662, 1169
HpyF3I CTNAG 4 cut(s) 186, 1110, 1270, 1346
HpySE526I ACGT 1 cut(s) 1003
Hsp92II CATG 7 cut(s) 418, 597, 662, 769, 964, 1169, 1288
HspAI GCGC 4 cut(s) 75, 335, 491, 1358
KroI GCCGGC 1 cut(s) 556
KroNI GCCGGC 1 cut(s) 558
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
LmnI GCTCC 4 cut(s) 400, 691, 894, 1068
Lsp1109I GCAGC 9 cut(s) 42, 45, 48, 51, 64, 241, 742, 1181, 1184
LweI GCATC 2 cut(s) 643, 652
MabI ACCWGGT 2 cut(s) 66, 323
MaeI CTAG 6 cut(s) 443, 932, 1020, 1067, 1140, 1427
MaeII ACGT 1 cut(s) 1003
MaeIII GTNAC 4 cut(s) 410, 761, 817, 1004
MalI GATC 7 cut(s) 177, 621, 845, 981, 1108, 1276, 1425
MboI GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
MboII GAAGA 9 cut(s) 79, 94, 115, 135, 141, 147, 153, 479, 1296
MfeI CAATTG 1 cut(s) 494
MflI RGATCY 4 cut(s) 175, 619, 1106, 1274
MhlI GDGCHC 3 cut(s) 891, 1032, 1165
MlyI GAGTC 1 cut(s) 1351
MmeI TCCRAC 1 cut(s) 586
MroNI GCCGGC 1 cut(s) 556
MroXI GAANNNNTTC 2 cut(s) 1093, 1303
MseI TTAA 5 cut(s) 168, 342, 543, 693, 1184
MspA1I CMGCKG 1 cut(s) 1457
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 3 cut(s) 68, 325, 984
MunI CAATTG 1 cut(s) 494
Mva1269I GAATGC 2 cut(s) 83, 1441
MvaI CCWGG 3 cut(s) 68, 325, 984
MwoI GCNNNNNNNGC 5 cut(s) 36, 39, 562, 662, 1169
NaeI GCCGGC 1 cut(s) 558
NdeII GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
NgoMIV GCCGGC 1 cut(s) 556
NlaIII CATG 7 cut(s) 418, 597, 662, 769, 964, 1169, 1288
NlaIV GGNNCC 4 cut(s) 502, 687, 901, 1248
NsbI TGCGCA 1 cut(s) 336
NspI RCATGY 2 cut(s) 597, 964
PciI ACATGT 2 cut(s) 593, 960
PcsI WCGNNNNNNNCGW 1 cut(s) 586
PctI GAATGC 2 cut(s) 83, 1441
PdiI GCCGGC 1 cut(s) 558
PdmI GAANNNNTTC 2 cut(s) 1093, 1303
PfeI GAWTC 2 cut(s) 137, 292
PleI GAGTC 1 cut(s) 1350
PpsI GAGTC 1 cut(s) 1350
PscI ACATGT 2 cut(s) 593, 960
Psp124BI GAGCTC 1 cut(s) 1165
Psp6I CCWGG 3 cut(s) 66, 323, 982
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 3 cut(s) 66, 323, 982
PspN4I GGNNCC 4 cut(s) 502, 687, 901, 1248
PspPI GGNCC 3 cut(s) 1246, 1262, 1363
PstI CTGCAG 2 cut(s) 268, 1282
PstNI CAGNNNCTG 2 cut(s) 324, 1277
PsuI RGATCY 4 cut(s) 175, 619, 1106, 1274
PvuII CAGCTG 1 cut(s) 1457
RsaI GTAC 6 cut(s) 65, 329, 365, 407, 592, 801
RsaNI GTAC 6 cut(s) 64, 328, 364, 406, 591, 800
SacI GAGCTC 1 cut(s) 1165
SaqAI TTAA 5 cut(s) 168, 342, 543, 693, 1184
Sau3AI GATC 7 cut(s) 175, 619, 843, 979, 1106, 1274, 1423
Sau96I GGNCC 3 cut(s) 1246, 1262, 1363
SchI GAGTC 1 cut(s) 1351
ScrFI CCNGG 3 cut(s) 68, 325, 984
SduI GDGCHC 3 cut(s) 891, 1032, 1165
SexAI ACCWGGT 2 cut(s) 66, 323
SfaNI GCATC 2 cut(s) 643, 652
SfcI CTRYAG 3 cut(s) 264, 420, 1278
SinI GGWCC 2 cut(s) 1246, 1363
SmlI CTYRAG 2 cut(s) 296, 722
SmoI CTYRAG 2 cut(s) 296, 722
SsiI CCGC 2 cut(s) 81, 892
SspMI CTAG 6 cut(s) 443, 932, 1020, 1067, 1140, 1427
SstI GAGCTC 1 cut(s) 1165
StyD4I CCNGG 3 cut(s) 66, 323, 982
StyI CCWWGG 2 cut(s) 1019, 1075
TaaI ACNGT 8 cut(s) 58, 226, 363, 410, 424, 976, 1215, 1316
TaiI ACGT 1 cut(s) 1006
TaqI TCGA 2 cut(s) 1144, 1338
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 137, 292
Tru1I TTAA 5 cut(s) 168, 342, 543, 693, 1184
Tru9I TTAA 5 cut(s) 168, 342, 543, 693, 1184
TscAI CASTG 4 cut(s) 229, 287, 870, 979
TseI GCWGC 9 cut(s) 30, 33, 36, 39, 77, 229, 755, 1169, 1172
TspDTI ATGAA 2 cut(s) 932, 1082
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 4 cut(s) 229, 287, 870, 979
VpaK11BI GGWCC 2 cut(s) 1246, 1363
XagI CCTNNNNNAGG 2 cut(s) 1023, 1269
XapI RAATTY 2 cut(s) 610, 1089
XbaI TCTAGA 1 cut(s) 442
XceI RCATGY 2 cut(s) 597, 964
XmaJI CCTAGG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 1461
XmnI GAANNNNTTC 2 cut(s) 1093, 1303
XspI CTAG 6 cut(s) 443, 932, 1020, 1067, 1140, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.