Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018986

Physical Location & Seq

Genomic Coordinates Reverse (-)

12458374 .. 12462134

Gene Structure 3761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTGTTATGGAGGAATGGGTGTAGGTGGGGGCGTTATGATTCTAGGTGGGATTAAATCCCCCTGGGATATGGTGCTCCCCCATTTGGATCCTTTTCGCAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTTTGCCCAAAGGTGTTTGATGAAAAGCGTGGAACTGTCTTGGATAGTGGAACGACGTACGCATACTCTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTATCACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

6.7

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	37 - 87	5.7e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465831 RchiOBHm_Chr7g0211461
rosa_samantha	Rh2DG246100 Rh3BG144700 Rh3CG146100 Rh3DG145900 Rh4DG241800 Rh5AG181100 Rh6AG351200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	83, 96
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	119, 154
AjnI	CCWGG	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	83, 96
BamHI	GGATCC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	223, 244
BsaJI	CCNNGG	2 cut(s)	62, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	62, 63
BseGI	GGATG	2 cut(s)	238, 259
BseLI	CCNNNNNNNGG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	78
BsiWI	CGTACG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	83, 96
BssECI	CCNNGG	2 cut(s)	62, 63
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	193, 265
BstF5I	GGATG	2 cut(s)	238, 259
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 242
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	238, 259
BtsIMutI	CAGTG	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	2 cut(s)	140, 149
CviKI_1	RGCY	2 cut(s)	140, 149
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	1 cut(s)	137
FaiI	YATR	7 cut(s)	9, 38, 71, 106, 135, 220, 268
FatI	CATG	1 cut(s)	133
FokI	GGATG	2 cut(s)	245, 266
FspBI	CTAG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	193, 265
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 242
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	3 cut(s)	49, 76, 126
LweI	GCATC	2 cut(s)	223, 244
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	1 cut(s)	5
MseI	TTAA	2 cut(s)	54, 249
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	146, 242
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	137
PasI	CCCWGGG	1 cut(s)	63
PciI	ACATGT	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	40
Pfl23II	CGTACG	1 cut(s)	213
PscI	ACATGT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	54, 249
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	4 cut(s)	28, 49, 171, 215
SfaNI	GCATC	2 cut(s)	223, 244
SgeI	CNNG	7 cut(s)	56, 75, 76, 146, 153, 197, 208
Sse9I	AATT	1 cut(s)	119
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	193, 265
TaiI	ACGT	1 cut(s)	215
TasI	AATT	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	54, 249
Tru9I	TTAA	2 cut(s)	54, 249
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.