Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018986

Physical Location & Seq

Genomic Coordinates Forward (+)

25277350 .. 25279457

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTGTTTTCTTCATCTCACATATACACTTTATTTTTGGGGCAACAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGCTTTACCCAAAGGTGTTTGATGAAAAGCATGGAACTGTCTTGGATAGTGGAACGACGTATGCATACTCTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTATAAGACTTCATCTTTTGAGTTCCCTCATGCCTGTTTTTTTTTTTTTTTTTGTTCTTTTGGTGATTCTTTTTGTATTATCTAAAGTCAAGCTTCTTTTAGATACCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

104

Amino Acids

12.09

Weight (kDa)

7.88

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	19 - 73	6.4e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465831 RchiOBHm_Chr7g0211461
rosa_samantha	Rh2DG246100 Rh3BG144700 Rh3CG146100 Rh3DG145900 Rh4DG241800 Rh5AG181100 Rh6AG351200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	65, 100
AluBI	AGCT	2 cut(s)	103, 295
AluI	AGCT	2 cut(s)	103, 295
AsuHPI	GGTGA	1 cut(s)	277
BccI	CCATC	1 cut(s)	64
BmsI	GCATC	2 cut(s)	169, 190
BseGI	GGATG	2 cut(s)	184, 205
Bst4CI	ACNGT	2 cut(s)	47, 139
BstF5I	GGATG	2 cut(s)	184, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 188
BstNSI	RCATGY	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	184, 205
CviAII	CATG	3 cut(s)	80, 131, 232
CviJI	RGCY	4 cut(s)	86, 95, 103, 295
CviKI_1	RGCY	4 cut(s)	86, 95, 103, 295
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	3 cut(s)	83, 134, 235
FaiI	YATR	9 cut(s)	22, 24, 52, 81, 132, 162, 166, 206, 233
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	3 cut(s)	79, 130, 231
FokI	GGATG	2 cut(s)	191, 212
Hin1II	CATG	3 cut(s)	83, 134, 235
HindIII	AAGCTT	2 cut(s)	101, 293
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	47, 139
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	164, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 188
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	83, 134, 235
LpnPI	CCDG	2 cut(s)	72, 249
LweI	GCATC	2 cut(s)	169, 190
MaeII	ACGT	1 cut(s)	158
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	1 cut(s)	239
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	92, 188
NlaIII	CATG	3 cut(s)	83, 134, 235
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	83
PciI	ACATGT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	195
SetI	ASST	4 cut(s)	105, 117, 161, 297
SfaNI	GCATC	2 cut(s)	169, 190
SgeI	CNNG	7 cut(s)	92, 99, 143, 154, 244, 248, 304
Sse9I	AATT	1 cut(s)	65
SspI	AATATT	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	47, 139
TaiI	ACGT	1 cut(s)	161
TasI	AATT	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	138, 203
XceI	RCATGY	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.