Rh3DG145900

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018986
Physical Location & Seq
Reverse (-)
12463704 .. 12465106
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG145900.1

Sequence Viewer

Length: 513 bp
ATGAGGCTCCTTACCAACGGGTACTACACGACGCGGTTGTGGATTGGAACACTGCCTCAGATGTTCGTTCTGATTGTGGATACGGAAAGACCCCAGAGCTCCAGCAGTGGTGTGCTTGGCGAGGATGTCATTTCTTTTGGCAATGAGAGTGCACTTGTGTCCTATCATGCTGTTTTTGGTTGCAAGAATATTGAAGCTGGTGGGGGCGTTATGATTCTAGGTGGGATTAAATCCCCCTGGGATATGGTGCTCCCCCATTTGGATCCTTTTCGCAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTTTGCCCAAAGGTGTTTGATGAAAAGCGTGGAACTGTCTTGGATAGTGGAACGACGTACGCATACTCTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTGTAAGACTTCGTCTTTTGAGTTACCTCATGTCTGTGTTTTTTTCTTTTTTTTCTTTTGGTGATTCTTTTTGTATTATCTAA

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

6.28

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 95 - 146 1.4e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 257, 270
AfaI GTAC 2 cut(s) 23, 389
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 3 cut(s) 194, 293, 328
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 99, 197
AluI AGCT 2 cut(s) 99, 197
Alw21I GWGCWC 3 cut(s) 101, 154, 252
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 2 cut(s) 257, 270
ApaLI GTGCAC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 154
BamHI GGATCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 3 cut(s) 101, 154, 252
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 1 cut(s) 73
BfaI CTAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 8, 264
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 397, 418
BpmI CTGGAG 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 236, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 236, 237
BseGI GGATG 3 cut(s) 130, 412, 433
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 34
BsiHKAI GWGCWC 3 cut(s) 101, 154, 252
BsiWI CGTACG 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 259
Bsp1286I GDGCHC 3 cut(s) 101, 154, 252
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 8, 264
BspPI GGATC 2 cut(s) 257, 270
BsrDI GCAATG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 236, 237
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 130, 412, 433
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 320, 416
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 154
BstUI CGCG 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 130, 412, 433
BtsI GCAGTG 2 cut(s) 50, 112
BtsIMutI CAGTG 2 cut(s) 50, 112
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 22, 388
CviAII CATG 3 cut(s) 167, 308, 460
CviJI RGCY 5 cut(s) 7, 99, 197, 314, 323
CviKI_1 RGCY 5 cut(s) 7, 99, 197, 314, 323
CviQI GTAC 2 cut(s) 22, 388
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 3 cut(s) 170, 311, 463
FaiI YATR 7 cut(s) 168, 212, 245, 280, 309, 394, 461
FatI CATG 3 cut(s) 166, 307, 459
FokI GGATG 3 cut(s) 137, 419, 440
FriOI GRGCYC 1 cut(s) 101
FspBI CTAG 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 85
HgaI GACGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 170, 311, 463
HinfI GANTC 2 cut(s) 214, 494
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 60, 72
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 2 cut(s) 34, 388
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 152, 183, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 416
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 3 cut(s) 170, 311, 463
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 12, 104, 255
LpnPI CCDG 6 cut(s) 107, 115, 183, 223, 250, 300
LweI GCATC 2 cut(s) 397, 418
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 452
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 101, 154, 252
MluCI AATT 1 cut(s) 293
MnlI CCTC 3 cut(s) 66, 115, 467
MseI TTAA 2 cut(s) 228, 423
MslI CAYNNNNRTG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 320, 416
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 170, 311, 463
NlaIV GGNNCC 2 cut(s) 8, 264
NspI RCATGY 1 cut(s) 311
PasI CCCWGGG 1 cut(s) 237
PciI ACATGT 1 cut(s) 307
PfeI GAWTC 2 cut(s) 214, 494
Pfl23II CGTACG 1 cut(s) 387
PflFI GACNNNGTC 1 cut(s) 441
PscI ACATGT 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspLI CGTACG 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 8, 264
PsuI RGATCY 1 cut(s) 262
PsyI GACNNNGTC 1 cut(s) 441
RsaI GTAC 2 cut(s) 23, 389
RsaNI GTAC 2 cut(s) 22, 388
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 228, 423
Sau3AI GATC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 3 cut(s) 101, 154, 252
SetI ASST 6 cut(s) 101, 199, 223, 345, 389, 459
SfaNI GCATC 2 cut(s) 397, 418
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 1 cut(s) 293
SsiI CCGC 1 cut(s) 34
SspI AATATT 2 cut(s) 190, 289
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 389
TasI AATT 1 cut(s) 293
TfiI GAWTC 2 cut(s) 214, 494
Tru1I TTAA 2 cut(s) 228, 423
Tru9I TTAA 2 cut(s) 228, 423
TscAI CASTG 2 cut(s) 57, 112
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 57, 112
Tth111I GACNNNGTC 1 cut(s) 441
VneI GTGCAC 1 cut(s) 150
XceI RCATGY 1 cut(s) 311
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.