RchiOBHm_Chr7g0211461

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018986
Physical Location & Seq
Forward (+)
28610751 .. 28612977
2227 bp
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UTR
Exon/CDS
Intron
PRQ18918

Sequence Viewer

Length: 270 bp
ATGTGTTATGGAGGAATTGGTGTAGGTGGGGGCGTTATGGTTCTAGGTGGGATTAAATCCCCCCGGGATATGGTGCTCACCCATTTGGATCCTTTTTGCAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTTTACTCAAAGGTGTTTGATGAAAAGCATGAAACTATCTTGGATAGTGGAACGACTTATGCATACTCTCCAAAGACTGTTTTTATTGCATTTAAGGATGCTATCACTGTATAG

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

6.24

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 37 - 87 3e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 83, 96
AfiI CCNNNNNNNGG 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 2 cut(s) 119, 154
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 2 cut(s) 83, 96
Ama87I CYCGRG 1 cut(s) 63
AsuC2I CCSGG 2 cut(s) 64, 65
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 63
BamHI GGATCC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 1 cut(s) 118
BcnI CCSGG 2 cut(s) 64, 65
BfaI CTAG 1 cut(s) 44
Bme1390I CCNGG 2 cut(s) 64, 65
BmeT110I CYCGRG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 64, 65
BmsI GCATC 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 64, 65
BsaJI CCNNGG 2 cut(s) 62, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 62, 63
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 2 cut(s) 83, 96
BssECI CCNNGG 2 cut(s) 62, 63
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 235, 265
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 62, 63
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 261
Cfr9I CCCGGG 1 cut(s) 63
CviAII CATG 2 cut(s) 134, 185
CviJI RGCY 2 cut(s) 140, 149
CviKI_1 RGCY 2 cut(s) 140, 149
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 2 cut(s) 137, 188
FaiI YATR 9 cut(s) 9, 38, 71, 106, 135, 186, 216, 220, 268
FatI CATG 2 cut(s) 133, 184
FokI GGATG 1 cut(s) 266
FspBI CTAG 1 cut(s) 44
HapII CCGG 1 cut(s) 64
Hin1II CATG 2 cut(s) 137, 188
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 235, 265
HpyCH4V TGCA 3 cut(s) 99, 218, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
Hsp92II CATG 2 cut(s) 137, 188
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 77, 126
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 15, 119
MnlI CCTC 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 54, 249
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 2 cut(s) 64, 65
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 2 cut(s) 64, 65
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 137, 188
NlaIV GGNNCC 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 137
PciI ACATGT 1 cut(s) 133
PscI ACATGT 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 88
SaqAI TTAA 2 cut(s) 54, 249
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 64, 65
SduI GDGCHC 1 cut(s) 78
SetI ASST 3 cut(s) 28, 49, 171
SfaNI GCATC 1 cut(s) 244
SgeI CNNG 8 cut(s) 56, 75, 76, 77, 146, 153, 197, 208
SmaI CCCGGG 1 cut(s) 65
Sse9I AATT 2 cut(s) 15, 119
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 62, 63
TaaI ACNGT 2 cut(s) 235, 265
TasI AATT 2 cut(s) 15, 119
Tru1I TTAA 2 cut(s) 54, 249
Tru9I TTAA 2 cut(s) 54, 249
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 192, 201
TspMI CCCGGG 1 cut(s) 63
TspRI CASTG 1 cut(s) 268
XceI RCATGY 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 63
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.