Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018986

Physical Location & Seq

Genomic Coordinates Reverse (-)

55024827 .. 55025745

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGTTCTAGGTGGGATTAAATCCCCTTGGGATATGGTGCTCACCCATTTGGATCCTTTTCGCAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTTTACCCAAAGGTGTTTGATGAAAAGCGTGGAACTGTCTTGGATAGTGGAACGACGTACGCATACTCTCCAAAGGATGCTTTTATTACATTTAAGGATGCTATCACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

77

Amino Acids

8.75

Weight (kDa)

6.71

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	25 - 75	7.3e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465831 RchiOBHm_Chr7g0211461
rosa_samantha	Rh2DG246100 Rh3BG144700 Rh3CG146100 Rh3DG145900 Rh4DG241800 Rh5AG181100 Rh6AG351200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	47, 60
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	83, 118
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	47, 60
AsuHPI	GGTGA	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	187, 208
BsaJI	CCNNGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	202, 223
BsiHKAI	GWGCWC	1 cut(s)	42
BsiWI	CGTACG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	47, 60
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	157, 229
BstF5I	GGATG	2 cut(s)	202, 223
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	202, 223
BtsIMutI	CAGTG	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	2 cut(s)	104, 113
CviKI_1	RGCY	2 cut(s)	104, 113
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	35, 70, 99, 184, 232
FatI	CATG	1 cut(s)	97
FokI	GGATG	2 cut(s)	209, 230
FspBI	CTAG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	157, 229
HpyCH4IV	ACGT	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	1 cut(s)	90
LweI	GCATC	2 cut(s)	187, 208
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	176
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	83
MseI	TTAA	2 cut(s)	18, 213
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	101
PciI	ACATGT	1 cut(s)	97
Pfl23II	CGTACG	1 cut(s)	177
PscI	ACATGT	1 cut(s)	97
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	18, 213
Sau3AI	GATC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	3 cut(s)	13, 135, 179
SfaNI	GCATC	2 cut(s)	187, 208
SgeI	CNNG	6 cut(s)	20, 39, 110, 117, 161, 172
Sse9I	AATT	1 cut(s)	83
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	157, 229
TaiI	ACGT	1 cut(s)	179
TasI	AATT	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	18, 213
Tru9I	TTAA	2 cut(s)	18, 213
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	232
XceI	RCATGY	1 cut(s)	101
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.