Rh3CG146100

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018986
Physical Location & Seq
Reverse (-)
12120062 .. 12121464
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG146100.1

Sequence Viewer

Length: 444 bp
ATGAGGCTCCTTACCAACGGGTACTACACGACGCGGTTGTGGATTGGAACACTGCCTCAGATGTTCGTTCTGATTGTGGATACGGAAAGACCCCAGGTTTCAACCCGATTGATCCAGCACGTACCAACCTGTGGGGGCGTTATGATTCTAGGTGGGATTAAATCCCCCTGGGATATGGTGCTCCCCCATTTGGATCCTTTTCGCAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTTTGCCCAAAGGTGTTTGATGAAAAGCGTGGAACTGTCTTGGATAGTGGAACGACGTACGCATACTCTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTGTAAGACTTCGTCTTTTGAGTTACCTCATGTCTGTGTTTTTTTCTTTTTTTTCTTTTGGTGATTCTTTTTGTATTATCTAA

Protein Analysis

147

Amino Acids

16.79

Weight (kDa)

8.81

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 72 - 123 1e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 34
AclWI GGATC 3 cut(s) 106, 188, 201
AfaI GTAC 3 cut(s) 23, 123, 320
AfiI CCNNNNNNNGG 2 cut(s) 131, 190
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 102, 224, 259
AjnI CCWGG 2 cut(s) 93, 167
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 3 cut(s) 106, 188, 201
AsuHPI GGTGA 1 cut(s) 434
BamHI GGATCC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 95, 169
BciVI GTATCC 1 cut(s) 73
BfaI CTAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 95, 169
BmiI GGNNCC 2 cut(s) 8, 195
BmrFI CCNGG 2 cut(s) 95, 169
BmsI GCATC 2 cut(s) 328, 349
BsaAI YACGTR 1 cut(s) 121
BsaJI CCNNGG 3 cut(s) 93, 167, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 190
BseBI CCWGG 2 cut(s) 95, 169
BseDI CCNNGG 3 cut(s) 93, 167, 168
BseGI GGATG 2 cut(s) 343, 364
BseLI CCNNNNNNNGG 2 cut(s) 131, 190
BseMII CTCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 183
BsiWI CGTACG 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 131, 190
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 111, 193
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 8, 195
BspPI GGATC 3 cut(s) 106, 188, 201
BssECI CCNNGG 3 cut(s) 93, 167, 168
BssMI GATC 2 cut(s) 111, 193
Bst2UI CCWGG 2 cut(s) 95, 169
Bst4CI ACNGT 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 343, 364
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 2 cut(s) 114, 196
BstMBI GATC 2 cut(s) 111, 193
BstMWI GCNNNNNNNGC 2 cut(s) 251, 347
BstNI CCWGG 2 cut(s) 95, 169
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 93, 167
BstUI CGCG 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 343, 364
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 50
CseI GACGC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 22, 122, 319
CviAII CATG 2 cut(s) 239, 391
CviJI RGCY 3 cut(s) 7, 245, 254
CviKI_1 RGCY 3 cut(s) 7, 245, 254
CviQI GTAC 3 cut(s) 22, 122, 319
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 113, 195
DpnII GATC 2 cut(s) 111, 193
EcoRII CCWGG 2 cut(s) 93, 167
FaeI CATG 2 cut(s) 242, 394
FaiI YATR 6 cut(s) 143, 176, 211, 240, 325, 392
FatI CATG 2 cut(s) 238, 390
FokI GGATG 2 cut(s) 350, 371
FspBI CTAG 1 cut(s) 149
HgaI GACGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 242, 394
HinfI GANTC 2 cut(s) 145, 425
HphI GGTGA 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 60, 72
Hpy99I CGWCG 2 cut(s) 34, 319
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 120, 317
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 347
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 120, 317
Hsp92II CATG 2 cut(s) 242, 394
Kzo9I GATC 2 cut(s) 111, 193
LmnI GCTCC 2 cut(s) 12, 186
LpnPI CCDG 7 cut(s) 80, 107, 128, 142, 154, 181, 231
LweI GCATC 2 cut(s) 328, 349
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 120, 317
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 113, 195
MboI GATC 2 cut(s) 111, 193
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 224
MnlI CCTC 2 cut(s) 66, 398
MseI TTAA 2 cut(s) 159, 354
MslI CAYNNNNRTG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 95, 169
MvaI CCWGG 2 cut(s) 95, 169
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 251, 347
NdeII GATC 2 cut(s) 111, 193
NlaIII CATG 2 cut(s) 242, 394
NlaIV GGNNCC 2 cut(s) 8, 195
NspI RCATGY 1 cut(s) 242
PasI CCCWGGG 1 cut(s) 168
PciI ACATGT 1 cut(s) 238
PfeI GAWTC 2 cut(s) 145, 425
Pfl23II CGTACG 1 cut(s) 318
PflFI GACNNNGTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 121
PscI ACATGT 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 93, 167
PspGI CCWGG 2 cut(s) 93, 167
PspLI CGTACG 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 8, 195
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 372
RsaI GTAC 3 cut(s) 23, 123, 320
RsaNI GTAC 3 cut(s) 22, 122, 319
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 159, 354
Sau3AI GATC 2 cut(s) 111, 193
ScrFI CCNGG 2 cut(s) 95, 169
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 99, 123, 131, 154, 276, 320, 390
SfaNI GCATC 2 cut(s) 328, 349
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 93, 167
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 123, 320
TasI AATT 1 cut(s) 224
TfiI GAWTC 2 cut(s) 145, 425
Tru1I TTAA 2 cut(s) 159, 354
Tru9I TTAA 2 cut(s) 159, 354
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 131
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.