RchiOBHm_Chr3g0468031

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018175
Physical Location & Seq
Forward (+)
14154864 .. 14155524
661 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43395

Sequence Viewer

Length: 576 bp
ATGCCTACTCCGGGTCGAGCAGCCGTCGATGCAATCCTCATATTCTGTCTCCTCCTCCTCAACAATGTTTCCGCCACCGAGTACACCTACATTGCCTCGCAGCAGGTGACGGCGCAGGACTTCCTCCAGGCCCACAACGAGGTCAGGGCCATGTTCAACGAGCCGATGCTAACGTGGGATGATAAGCTGGCTGACTACGCCCACCAGTGGGCTGAGAAGACCAGCGCCCTAGGGAAATGCGAGGAGCGGTACCACTCGAACGGCCCCTATGGCGAGAACCTCTTTTGGGGGTGGTCGTGGAACGACTACTTTAGCCCTAGAGACGCCGTCATGATGTGGACCGAGGAGAAAAACGACTTCGACGTCAAGTCGTTGACGTGCATGCCGGGGAAAATGTGCGGCCACTTCACGCAGGTCGTGTGGAGGAACTCCAAGAGAGTAGGGTGCAGCCGCATCAAGTGCGCCCAAGGCGGAGTACGACAGTGCCGCCTGATTCGGCTGAACAAGTGTCGCAAGCAGTACCGCATGTTGTTCAGCCGAAAGTGCCGCAACCGGTGCCGGTTGATGGTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

191

Amino Acids

22.31

Weight (kDa)

9.14

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 42 - 158 4.6e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018175)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0468031
rosa_laevigata RLG00000024457
rosa_multiflora Rmu_co8380321.1_g000001
rosa_roxburghii Rroxscaffold_6G00413160
rosa_rugosa Rorug03G0091600 Rorug03G0091700 Rorug03G0091800
rosa_samantha Rh3BG161600 Rh3CG161600 Rh3DG162100
rosa_wichuraiana Rw3G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 1 cut(s) 366
Acc36I ACCTGC 2 cut(s) 94, 403
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 2 cut(s) 249, 555
AccBSI CCGCTC 1 cut(s) 247
AciI CCGC 8 cut(s) 72, 247, 399, 451, 471, 487, 523, 547
AcoI YGGCCR 1 cut(s) 400
AcyI GRCGYC 2 cut(s) 324, 363
AfaI GTAC 4 cut(s) 83, 251, 477, 521
AfiI CCNNNNNNNGG 6 cut(s) 11, 139, 207, 208, 286, 565
AgeI ACCGGT 1 cut(s) 552
AgsI TTSAA 1 cut(s) 157
AhdI GACNNNNNGTC 1 cut(s) 367
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 53, 315
AoxI GGCC 4 cut(s) 129, 147, 262, 400
ApeKI GCWGC 3 cut(s) 20, 100, 447
AsiGI ACCGGT 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 249
AspA2I CCTAGG 1 cut(s) 229
AspLEI GCGC 3 cut(s) 115, 227, 464
AspS9I GGNCC 4 cut(s) 130, 147, 263, 339
AsuC2I CCSGG 2 cut(s) 12, 387
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 339
AvrII CCTAGG 1 cut(s) 229
BanI GGYRCC 2 cut(s) 249, 555
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 32, 112, 459
BccI CCATC 1 cut(s) 559
BceAI ACGGC 4 cut(s) 8, 126, 277, 311
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 2 cut(s) 12, 387
BcoDI GTCTC 2 cut(s) 53, 315
BfaI CTAG 2 cut(s) 230, 318
BfoI RGCGCY 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 94, 403
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 7 cut(s) 21, 101, 400, 448, 451, 487, 547
BlnI CCTAGG 1 cut(s) 229
BlsI GCNGC 7 cut(s) 22, 102, 401, 449, 452, 488, 548
Bme1390I CCNGG 3 cut(s) 12, 128, 387
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 4 cut(s) 130, 147, 263, 339
BmiI GGNNCC 3 cut(s) 251, 265, 557
BmrFI CCNGG 3 cut(s) 12, 128, 387
BmsI GCATC 3 cut(s) 19, 156, 462
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 12, 387
BsaBI GATNNNNATC 1 cut(s) 569
BsaHI GRCGYC 2 cut(s) 324, 363
BsaJI CCNNGG 4 cut(s) 229, 342, 386, 466
BsaWI WCCGGW 1 cut(s) 552
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 139, 207, 208, 286, 565
Bse118I RCCGGY 2 cut(s) 552, 558
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 569
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 4 cut(s) 229, 342, 386, 466
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 6 cut(s) 11, 139, 207, 208, 286, 565
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 5 cut(s) 41, 44, 47, 257, 359
BseXI GCAGC 3 cut(s) 32, 112, 459
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 4 cut(s) 131, 149, 264, 402
BshNI GGYRCC 2 cut(s) 249, 555
BshTI ACCGGT 1 cut(s) 552
BsiSI CCGG 4 cut(s) 11, 386, 553, 559
BslI CCNNNNNNNGG 6 cut(s) 11, 139, 207, 208, 286, 565
BsmAI GTCTC 2 cut(s) 53, 315
BsmBI CGTCTC 1 cut(s) 315
BsnI GGCC 4 cut(s) 131, 149, 264, 402
BspACI CCGC 8 cut(s) 72, 247, 399, 451, 471, 487, 523, 547
BspANI GGCC 4 cut(s) 131, 149, 264, 402
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 251, 265, 557
BspMI ACCTGC 2 cut(s) 94, 403
BspT107I GGYRCC 2 cut(s) 249, 555
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 2 cut(s) 552, 558
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 2 cut(s) 552, 558
BssECI CCNNGG 4 cut(s) 229, 342, 386, 466
BssNI GRCGYC 2 cut(s) 324, 363
BssT1I CCWWGG 2 cut(s) 229, 466
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 483
BstACI GRCGYC 2 cut(s) 324, 363
BstAPI GCANNNNNTGC 2 cut(s) 459, 555
BstC8I GCNNGC 3 cut(s) 189, 383, 515
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 3 cut(s) 115, 227, 464
BstMAI GTCTC 2 cut(s) 53, 315
BstMWI GCNNNNNNNGC 7 cut(s) 29, 197, 270, 459, 468, 543, 555
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 2 cut(s) 385, 529
BstSCI CCNGG 3 cut(s) 10, 126, 385
BstV1I GCAGC 3 cut(s) 32, 112, 459
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 4 cut(s) 131, 149, 264, 402
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 212, 488
BveI ACCTGC 2 cut(s) 94, 403
Cac8I GCNNGC 3 cut(s) 189, 383, 515
CciI TCATGA 1 cut(s) 330
CfoI GCGC 3 cut(s) 115, 227, 464
Cfr10I RCCGGY 2 cut(s) 552, 558
Cfr13I GGNCC 4 cut(s) 130, 147, 263, 339
CseI GACGC 1 cut(s) 332
Csp6I GTAC 4 cut(s) 82, 250, 476, 520
CspAI ACCGGT 1 cut(s) 552
CviAII CATG 4 cut(s) 151, 331, 382, 526
CviQI GTAC 4 cut(s) 82, 250, 476, 520
DdeI CTNAG 1 cut(s) 213
DrdI GACNNNNNNGTC 1 cut(s) 362
DriI GACNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 400
Eam1105I GACNNNNNGTC 1 cut(s) 367
EciI GGCGGA 2 cut(s) 61, 486
Eco130I CCWWGG 2 cut(s) 229, 466
Eco47I GGWCC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 229, 466
ErhI CCWWGG 2 cut(s) 229, 466
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 4 cut(s) 154, 334, 385, 529
FaiI YATR 6 cut(s) 41, 152, 270, 332, 383, 527
FatI CATG 4 cut(s) 150, 330, 381, 525
Fnu4HI GCNGC 7 cut(s) 21, 101, 400, 448, 451, 487, 547
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 7 cut(s) 21, 101, 400, 448, 451, 487, 547
FspBI CTAG 2 cut(s) 230, 318
GlaI GCGC 3 cut(s) 114, 226, 463
GluI GCNGC 7 cut(s) 21, 101, 400, 448, 451, 487, 547
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 4 cut(s) 131, 149, 264, 402
HapII CCGG 4 cut(s) 11, 386, 553, 559
HgaI GACGC 1 cut(s) 332
HhaI GCGC 3 cut(s) 115, 227, 464
Hin1I GRCGYC 2 cut(s) 324, 363
Hin1II CATG 4 cut(s) 154, 334, 385, 529
Hin6I GCGC 3 cut(s) 113, 225, 462
HinP1I GCGC 3 cut(s) 113, 225, 462
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 1 cut(s) 493
HpaII CCGG 4 cut(s) 11, 386, 553, 559
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 84, 339, 375
Hpy188I TCNGA 1 cut(s) 575
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 3 cut(s) 84, 339, 375
Hpy99I CGWCG 2 cut(s) 29, 365
HpyCH4III ACNGT 1 cut(s) 483
HpyCH4IV ACGT 3 cut(s) 173, 363, 377
HpyCH4V TGCA 3 cut(s) 32, 381, 447
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 197, 270, 459, 468, 543, 555
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 3 cut(s) 173, 363, 377
Hsp92I GRCGYC 2 cut(s) 324, 363
Hsp92II CATG 4 cut(s) 154, 334, 385, 529
HspAI GCGC 3 cut(s) 113, 225, 462
KpnI GGTACC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 3 cut(s) 32, 112, 459
LweI GCATC 3 cut(s) 19, 156, 462
MaeI CTAG 2 cut(s) 230, 318
MaeII ACGT 3 cut(s) 173, 363, 377
MaeIII GTNAC 1 cut(s) 106
MbiI CCGCTC 1 cut(s) 247
MboII GAAGA 1 cut(s) 229
MspI CCGG 4 cut(s) 11, 386, 553, 559
MspR9I CCNGG 3 cut(s) 12, 128, 387
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 7 cut(s) 29, 197, 270, 459, 468, 543, 555
NciI CCSGG 2 cut(s) 12, 387
NlaIII CATG 4 cut(s) 154, 334, 385, 529
NlaIV GGNNCC 3 cut(s) 251, 265, 557
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 2 cut(s) 385, 529
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 493
PflFI GACNNNGTC 1 cut(s) 326
PinAI ACCGGT 1 cut(s) 552
PkrI GCNGC 7 cut(s) 22, 102, 401, 449, 452, 488, 548
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 251, 265, 557
PspPI GGNCC 4 cut(s) 130, 147, 263, 339
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 4 cut(s) 83, 251, 477, 521
RsaNI GTAC 4 cut(s) 82, 250, 476, 520
SatI GCNGC 7 cut(s) 21, 101, 400, 448, 451, 487, 547
Sau96I GGNCC 4 cut(s) 130, 147, 263, 339
ScrFI CCNGG 3 cut(s) 12, 128, 387
SetI ASST 9 cut(s) 89, 108, 144, 176, 189, 282, 366, 380, 417
SfaNI GCATC 3 cut(s) 19, 156, 462
SinI GGWCC 1 cut(s) 339
SphI GCATGC 1 cut(s) 385
SsiI CCGC 8 cut(s) 72, 247, 399, 451, 471, 487, 523, 547
SspMI CTAG 2 cut(s) 230, 318
StyD4I CCNGG 3 cut(s) 10, 126, 385
StyI CCWWGG 2 cut(s) 229, 466
TaaI ACNGT 1 cut(s) 483
TaiI ACGT 3 cut(s) 176, 366, 380
TaqI TCGA 4 cut(s) 16, 27, 257, 360
TaqII GACCGA 1 cut(s) 356
TatI WGTACW 1 cut(s) 81
TauI GCSGC 4 cut(s) 402, 453, 489, 549
TfiI GAWTC 1 cut(s) 493
TscAI CASTG 2 cut(s) 212, 488
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 20, 100, 447
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 2 cut(s) 212, 488
Tth111I GACNNNGTC 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 339
XceI RCATGY 2 cut(s) 385, 529
XmaJI CCTAGG 1 cut(s) 229
XspI CTAG 2 cut(s) 230, 318
ZraI GACGTC 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.