Rorug03G0091800

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018175
Physical Location & Seq
Reverse (-)
7159565 .. 7160362
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0091800.1

Sequence Viewer

Length: 798 bp
ATGGCTATTGCTCGTCTGGTAGCTAATCGTTTCTTTCTTGTTTTTGCTTCTGTTTTCTTGCTAGGAGTGCCGCCTTGGTGTGGGCTCCTTGTGGTGACTGATTGGGAGGGTAGTGTTGCTGTTTGGATGGCTGATCGGCGGCCGAGCTCTAACGGCGTGGATTTGGTTTGGCCTGAGTTGGACGGGCGCGTCTGGGTTTTGGATCGGGGTCGTCAGACTTCCGACGGTGATAGGGATTGTACAATCGCTTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCGTGGTGTTGCTGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGACCAAGGCGTGGAGGATTTTCAGGCTGTCCTGGGCGCCTCCGACCGGGTTCATCCCGATCTAGGATCTGGTTTCTTCAATGCTTGCGAAGGCACCAGAATGGATCGGAAGTGGGGTCGAGGTGATCAGGACTGGGCGCGGATTTGTGTGTCTTTCGATCCTGGAGATGGGCCAGTAGCGTCGGCGGTGACCCACGGTGACGGCAGATATGGGGACGGAGGTTTTGTGGTGACCCGAGAGGGGGGGGTCCCACAGCGCCGCGACCCCGAGCCAATGAGAAATCGACATGTCACGCATGACATCCCGATGACTCATCAACCCGAAACCGCAAGGCCTTTTGGGTTTAGTTGGTTGGTTCACAAAACATTTTCTTGGACAAGTCATTCTAGCAACCAAACAACACATTTTCATAAGCGGAATTCGAAATGGGCTAAGAGTTTTGGGCTTGCGATCGGAGCCCAATTTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

265

Amino Acids

29.07

Weight (kDa)

8.44

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018175)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0468031
rosa_laevigata RLG00000024457
rosa_multiflora Rmu_co8380321.1_g000001
rosa_roxburghii Rroxscaffold_6G00413160
rosa_rugosa Rorug03G0091600 Rorug03G0091700 Rorug03G0091800
rosa_samantha Rh3BG161600 Rh3CG161600 Rh3DG162100
rosa_wichuraiana Rw3G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccB1I GGYRCC 2 cut(s) 359, 416
AccB7I CCANNNNNTGG 1 cut(s) 334
AccII CGCG 3 cut(s) 189, 463, 585
AciI CCGC 7 cut(s) 71, 139, 463, 509, 583, 651, 739
AclWI GGATC 5 cut(s) 210, 329, 397, 435, 476
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 742
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 8 cut(s) 80, 317, 334, 369, 386, 491, 564, 565
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 3 cut(s) 259, 354, 484
AluBI AGCT 2 cut(s) 23, 147
AluI AGCT 2 cut(s) 23, 147
Alw21I GWGCWC 1 cut(s) 149
AlwI GGATC 5 cut(s) 210, 329, 397, 435, 476
Ama87I CYCGRG 2 cut(s) 558, 590
AoxI GGCC 6 cut(s) 140, 170, 256, 303, 494, 656
ApeKI GCWGC 2 cut(s) 271, 274
ApoI RAATTY 1 cut(s) 742
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AspLEI GCGC 4 cut(s) 189, 362, 463, 582
AspS9I GGNCC 4 cut(s) 257, 304, 494, 571
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 6 cut(s) 106, 239, 458, 523, 533, 565
AsuII TTCGAA 1 cut(s) 746
AvaI CYCGRG 2 cut(s) 558, 590
AvaII GGWCC 1 cut(s) 571
BanI GGYRCC 2 cut(s) 359, 416
BanII GRGCYC 3 cut(s) 87, 149, 784
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 2 cut(s) 121, 485
BceAI ACGGC 2 cut(s) 169, 541
BciT130I CCWGG 3 cut(s) 261, 356, 486
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 371
BfaI CTAG 3 cut(s) 62, 386, 711
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 2 cut(s) 363, 583
BisI GCNGC 5 cut(s) 71, 140, 272, 275, 583
BlsI GCNGC 5 cut(s) 72, 141, 273, 276, 584
Bme1390I CCNGG 4 cut(s) 261, 356, 371, 486
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 2 cut(s) 558, 590
BmgT120I GGNCC 4 cut(s) 257, 304, 494, 571
BmiI GGNNCC 6 cut(s) 86, 361, 418, 572, 573, 781
BmrFI CCNGG 4 cut(s) 261, 356, 371, 486
BmrI ACTGGG 1 cut(s) 466
BmuI ACTGGG 1 cut(s) 466
BpmI CTGGAG 2 cut(s) 312, 507
Bpu14I TTCGAA 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 5 cut(s) 74, 259, 328, 355, 517
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 317, 334, 369, 386, 491, 564, 565
Bse1I ACTGG 3 cut(s) 311, 461, 497
BseBI CCWGG 3 cut(s) 261, 356, 486
BseDI CCNNGG 5 cut(s) 74, 259, 328, 355, 517
BseGI GGATG 3 cut(s) 132, 376, 624
BseLI CCNNNNNNNGG 8 cut(s) 80, 317, 334, 369, 386, 491, 564, 565
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 311, 461, 497
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 258, 286
Bsh1236I CGCG 3 cut(s) 189, 463, 585
Bsh1285I CGRYCG 3 cut(s) 143, 370, 777
BshFI GGCC 6 cut(s) 142, 172, 258, 305, 496, 658
BshNI GGYRCC 2 cut(s) 359, 416
BsiEI CGRYCG 3 cut(s) 143, 370, 777
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 2 cut(s) 558, 590
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 2 cut(s) 551, 557
BslI CCNNNNNNNGG 8 cut(s) 80, 317, 334, 369, 386, 491, 564, 565
BsmFI GGGAC 2 cut(s) 551, 557
BsnI GGCC 6 cut(s) 142, 172, 258, 305, 496, 658
BsoBI CYCGRG 2 cut(s) 558, 590
Bsp119I TTCGAA 1 cut(s) 746
Bsp1286I GDGCHC 3 cut(s) 87, 149, 784
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
BspACI CCGC 7 cut(s) 71, 139, 463, 509, 583, 651, 739
BspANI GGCC 6 cut(s) 142, 172, 258, 305, 496, 658
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 3 cut(s) 189, 463, 585
BspLI GGNNCC 6 cut(s) 86, 361, 418, 572, 573, 781
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 5 cut(s) 210, 329, 397, 435, 476
BspT104I TTCGAA 1 cut(s) 746
BspT107I GGYRCC 2 cut(s) 359, 416
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 3 cut(s) 311, 461, 497
BssECI CCNNGG 5 cut(s) 74, 259, 328, 355, 517
BssMI GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 74, 328
Bst2UI CCWGG 3 cut(s) 261, 356, 486
Bst4CI ACNGT 2 cut(s) 227, 521
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 409, 771
BstDEI CTNAG 2 cut(s) 174, 756
BstDSI CCRYGG 1 cut(s) 517
BstEII GGTNACC 2 cut(s) 511, 553
BstF5I GGATG 3 cut(s) 132, 376, 624
BstFNI CGCG 3 cut(s) 189, 463, 585
BstH2I RGCGCY 2 cut(s) 363, 583
BstHHI GCGC 4 cut(s) 189, 362, 463, 582
BstKTI GATC 9 cut(s) 136, 205, 324, 385, 392, 430, 451, 484, 777
BstMBI GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
BstMCI CGRYCG 3 cut(s) 143, 370, 777
BstMWI GCNNNNNNNGC 3 cut(s) 67, 153, 779
BstNI CCWGG 3 cut(s) 261, 356, 486
BstNSI RCATGY 1 cut(s) 614
BstPI GGTNACC 2 cut(s) 511, 553
BstSCI CCNGG 4 cut(s) 259, 354, 369, 484
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 3 cut(s) 189, 463, 585
BstV1I GCAGC 2 cut(s) 258, 286
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BstZI CGGCCG 1 cut(s) 140
BsuRI GGCC 6 cut(s) 142, 172, 258, 305, 496, 658
BtgI CCRYGG 1 cut(s) 517
BtsCI GGATG 3 cut(s) 132, 376, 624
Cac8I GCNNGC 2 cut(s) 409, 771
CfoI GCGC 4 cut(s) 189, 362, 463, 582
Cfr13I GGNCC 4 cut(s) 257, 304, 494, 571
CseI GACGC 3 cut(s) 178, 266, 492
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 611, 620
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 174, 756
DinI GGCGCC 1 cut(s) 361
DpnI GATC 9 cut(s) 135, 204, 323, 384, 391, 429, 450, 483, 776
DpnII GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 140
EagI CGGCCG 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 74, 328
Eco147I AGGCCT 1 cut(s) 658
Eco24I GRGCYC 3 cut(s) 87, 149, 784
Eco47I GGWCC 1 cut(s) 571
Eco52I CGGCCG 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 147
Eco88I CYCGRG 2 cut(s) 558, 590
Eco91I GGTNACC 2 cut(s) 511, 553
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 571
EcoO65I GGTNACC 2 cut(s) 511, 553
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 3 cut(s) 259, 354, 484
EcoT14I CCWWGG 2 cut(s) 74, 328
EcoT38I GRGCYC 3 cut(s) 87, 149, 784
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 2 cut(s) 74, 328
FaeI CATG 2 cut(s) 614, 623
FaiI YATR 4 cut(s) 534, 612, 621, 735
FaqI GGGAC 2 cut(s) 551, 557
FatI CATG 2 cut(s) 610, 619
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 71, 140, 272, 275, 583
FokI GGATG 3 cut(s) 139, 363, 611
FriOI GRGCYC 3 cut(s) 87, 149, 784
Fsp4HI GCNGC 5 cut(s) 71, 140, 272, 275, 583
FspBI CTAG 3 cut(s) 62, 386, 711
GlaI GCGC 4 cut(s) 188, 361, 462, 581
GluI GCNGC 5 cut(s) 71, 140, 272, 275, 583
GsuI CTGGAG 2 cut(s) 312, 507
HaeII RGCGCY 2 cut(s) 363, 583
HaeIII GGCC 6 cut(s) 142, 172, 258, 305, 496, 658
HapII CCGG 1 cut(s) 370
HgaI GACGC 3 cut(s) 178, 266, 492
HhaI GCGC 4 cut(s) 189, 362, 463, 582
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 2 cut(s) 614, 623
Hin6I GCGC 4 cut(s) 187, 360, 461, 580
HinP1I GCGC 4 cut(s) 187, 360, 461, 580
HinfI GANTC 1 cut(s) 634
HpaII CCGG 1 cut(s) 370
HphI GGTGA 6 cut(s) 106, 239, 458, 523, 533, 565
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 5 cut(s) 216, 223, 367, 432, 779
Hpy188III TCNNGA 3 cut(s) 380, 452, 628
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 3 cut(s) 227, 282, 508
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 2 cut(s) 227, 521
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 153, 779
HpyF3I CTNAG 2 cut(s) 174, 756
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 2 cut(s) 614, 623
HspAI GCGC 4 cut(s) 187, 360, 461, 580
KasI GGCGCC 1 cut(s) 359
KflI GGGWCCC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
LmnI GCTCC 2 cut(s) 90, 779
Lsp1109I GCAGC 2 cut(s) 258, 286
MaeI CTAG 3 cut(s) 62, 386, 711
MaeIII GTNAC 5 cut(s) 94, 511, 521, 553, 613
MalI GATC 9 cut(s) 135, 204, 323, 384, 391, 429, 450, 483, 776
MboI GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
MboII GAAGA 1 cut(s) 391
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 3 cut(s) 87, 149, 784
MluCI AATT 2 cut(s) 742, 785
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 3 cut(s) 159, 246, 390
MnlI CCTC 6 cut(s) 100, 331, 373, 437, 536, 556
MslI CAYNNNNRTG 2 cut(s) 422, 629
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 4 cut(s) 261, 356, 371, 486
MvaI CCWGG 3 cut(s) 261, 356, 486
MvnI CGCG 3 cut(s) 189, 463, 585
MwoI GCNNNNNNNGC 3 cut(s) 67, 153, 779
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 371
NdeII GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
NlaIII CATG 2 cut(s) 614, 623
NlaIV GGNNCC 6 cut(s) 86, 361, 418, 572, 573, 781
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 5 cut(s) 94, 511, 521, 553, 613
NspI RCATGY 1 cut(s) 614
NspV TTCGAA 1 cut(s) 746
PceI AGGCCT 1 cut(s) 658
PciI ACATGT 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PflMI CCANNNNNTGG 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 5 cut(s) 72, 141, 273, 276, 584
Ple19I CGATCG 1 cut(s) 777
PleI GAGTC 1 cut(s) 628
PluTI GGCGCC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 628
PpuMI RGGWCCY 1 cut(s) 571
PscI ACATGT 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 3 cut(s) 259, 354, 484
PspEI GGTNACC 2 cut(s) 511, 553
PspGI CCWGG 3 cut(s) 259, 354, 484
PspN4I GGNNCC 6 cut(s) 86, 361, 418, 572, 573, 781
PspPI GGNCC 4 cut(s) 257, 304, 494, 571
PspPPI RGGWCCY 1 cut(s) 571
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 1 cut(s) 389
PvuI CGATCG 1 cut(s) 777
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 2 cut(s) 422, 629
SacI GAGCTC 1 cut(s) 149
SatI GCNGC 5 cut(s) 71, 140, 272, 275, 583
Sau3AI GATC 9 cut(s) 133, 202, 321, 382, 389, 427, 448, 481, 774
Sau96I GGNCC 4 cut(s) 257, 304, 494, 571
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 4 cut(s) 261, 356, 371, 486
SduI GDGCHC 3 cut(s) 87, 149, 784
SetI ASST 4 cut(s) 25, 149, 448, 547
SfcI CTRYAG 1 cut(s) 272
SfoI GGCGCC 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 746
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 422, 629
Sse9I AATT 2 cut(s) 742, 785
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 7 cut(s) 71, 139, 463, 509, 583, 651, 739
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 3 cut(s) 62, 386, 711
SstI GAGCTC 1 cut(s) 149
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 4 cut(s) 259, 354, 369, 484
StyI CCWWGG 2 cut(s) 74, 328
TaaI ACNGT 2 cut(s) 227, 521
TaqI TCGA 5 cut(s) 324, 442, 480, 607, 746
TasI AATT 2 cut(s) 742, 785
TatI WGTACW 1 cut(s) 239
TauI GCSGC 3 cut(s) 73, 142, 585
TseFI GTSAC 5 cut(s) 94, 511, 521, 553, 613
TseI GCWGC 2 cut(s) 271, 274
Tsp45I GTSAC 5 cut(s) 94, 511, 521, 553, 613
TspDTI ATGAA 2 cut(s) 365, 722
TspGWI ACGGA 1 cut(s) 555
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 614
XspI CTAG 3 cut(s) 62, 386, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.