Rroxscaffold_6G00413160

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018175
Physical Location & Seq
Reverse (-)
35606415 .. 35608038
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413160.1

Sequence Viewer

Length: 942 bp
ATGCCTCCTCCGGGTCGAGCAGCCGTCGCTACAATTCTCGCATTCTGTTTCCTCCTCCTCAACAATGTCTCCGCCACCGAGCACACCTACATTGCCTCGCAGCAGGTGACGGCGCAGGATTTCCTCCAGGCCCACAACGAGGTCAGGGCCATGTTCAACGAGCCGATGCTAACTTGGGACGATAAGCTGGCCGACTACGCCCACCAGTGGGCCGAGAAGACCAGCGCCCTTGGGAAATGCGAGGAGCGTTACCACTCCAACGGCCCCTACGGCGAGAACCTCTTTTGGGGTTGGTCGTGGAACGACTACTTTAGCCCTAGAGACGCCGTCATGATGTGGACCGAGGAGAAAAACGACTTCGACGTCAAGTCGTTGACGTGCACGCCGGGGAAAATGTGCGGCCACTTCACGCAGGTCGTGTGGAGGAACTCCAAGAGAGTAGGGTGCAGCCGCATCAAGTGCGCCCAAGGCGGAGTGTTGATGATTTGTAATTATGATCCTCCTGGGAATTGGATTGATTCGAAACTTGGAGGTCTCATGAATCCCTTCGGCGAGGATAAGACGACAGTGCAGCCTGTTTCGGCTGAACAAGTGACGCAAGCAATACCGATACCGAATGTTGTTCAGCCGAAAGTGGCGCAACCGATGCCGGTTGATGGTCATCCGACAGTGCCGCACCCGGTGCCGGCTGATGGTCATCCGAAAGGAGAGGAGGTCATCATCGTGGTAGTGCTAAACCTAACCGGAACCGTAATCATCGTAACCGTAACCGTAACCACCTTAGCCCCCGCCAACGCTATCTTAATCGCATCCGTCGTCGTCAACGTGATAATCGTAAACTGTAGTCGCAACAACCTCTGCGGCCTGGCTAAACGCGCCATTGCCTGTTCCACTCCAATTATGTTCCGGTTAAATCTTTGTGTACATTTTATAAGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

313

Amino Acids

34.44

Weight (kDa)

6.49

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 42 - 165 8e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018175)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0468031
rosa_laevigata RLG00000024457
rosa_multiflora Rmu_co8380321.1_g000001
rosa_roxburghii Rroxscaffold_6G00413160
rosa_rugosa Rorug03G0091600 Rorug03G0091700 Rorug03G0091800
rosa_samantha Rh3BG161600 Rh3CG161600 Rh3DG162100
rosa_wichuraiana Rw3G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 932
AarI CACCTGC 1 cut(s) 94
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 1 cut(s) 366
Acc36I ACCTGC 2 cut(s) 94, 403
AccB1I GGYRCC 1 cut(s) 682
AccII CGCG 1 cut(s) 876
AciI CCGC 7 cut(s) 72, 399, 451, 471, 674, 789, 861
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 2 cut(s) 189, 400
AcyI GRCGYC 2 cut(s) 324, 363
AdeI CACNNNGTG 1 cut(s) 682
AfaI GTAC 1 cut(s) 924
AfiI CCNNNNNNNGG 8 cut(s) 11, 139, 207, 208, 286, 656, 685, 692
AgsI TTSAA 1 cut(s) 157
AhdI GACNNNNNGTC 1 cut(s) 367
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 3 cut(s) 126, 502, 864
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw21I GWGCWC 2 cut(s) 84, 383
Alw26I GTCTC 3 cut(s) 73, 315, 539
Alw44I GTGCAC 1 cut(s) 379
AlwI GGATC 1 cut(s) 491
AoxI GGCC 7 cut(s) 129, 147, 189, 210, 262, 400, 862
ApaLI GTGCAC 1 cut(s) 379
ApeKI GCWGC 4 cut(s) 20, 100, 447, 571
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 5 cut(s) 115, 227, 464, 640, 878
AspS9I GGNCC 5 cut(s) 130, 147, 210, 263, 339
AsuC2I CCSGG 3 cut(s) 12, 387, 680
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 84, 383
BbvI GCAGC 4 cut(s) 32, 112, 459, 583
BccI CCATC 2 cut(s) 650, 686
BceAI ACGGC 5 cut(s) 8, 126, 277, 286, 311
BciT130I CCWGG 3 cut(s) 128, 504, 866
BcnI CCSGG 3 cut(s) 12, 387, 680
BcoDI GTCTC 3 cut(s) 73, 315, 539
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 841
BfoI RGCGCY 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 94, 403
BglI GCCNNNNNGGC 1 cut(s) 270
BglII AGATCT 1 cut(s) 935
BisI GCNGC 8 cut(s) 21, 101, 400, 448, 451, 572, 674, 862
BlsI GCNGC 8 cut(s) 22, 102, 401, 449, 452, 573, 675, 863
Bme1390I CCNGG 6 cut(s) 12, 128, 387, 504, 680, 866
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 5 cut(s) 130, 147, 210, 263, 339
BmiI GGNNCC 3 cut(s) 265, 684, 748
BmrFI CCNGG 6 cut(s) 12, 128, 387, 504, 680, 866
BmsI GCATC 4 cut(s) 156, 462, 636, 818
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 781
Bpu14I TTCGAA 1 cut(s) 521
BpuMI CCSGG 3 cut(s) 12, 387, 680
BsaBI GATNNNNATC 2 cut(s) 660, 696
BsaHI GRCGYC 2 cut(s) 324, 363
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 229, 342, 386, 466, 503
BsaWI WCCGGW 2 cut(s) 743, 906
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 699, 729
Bsc4I CCNNNNNNNGG 8 cut(s) 11, 139, 207, 208, 286, 656, 685, 692
Bse118I RCCGGY 2 cut(s) 649, 685
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 2 cut(s) 90, 879
Bse8I GATNNNNATC 2 cut(s) 660, 696
BseBI CCWGG 3 cut(s) 128, 504, 866
BseDI CCNNGG 5 cut(s) 229, 342, 386, 466, 503
BseGI GGATG 3 cut(s) 661, 697, 809
BseJI GATNNNNATC 2 cut(s) 660, 696
BseLI CCNNNNNNNGG 8 cut(s) 11, 139, 207, 208, 286, 656, 685, 692
BseMI GCAATG 2 cut(s) 90, 879
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 5 cut(s) 44, 47, 257, 359, 725
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 4 cut(s) 32, 112, 459, 583
BsgI GTGCAG 2 cut(s) 466, 590
Bsh1236I CGCG 1 cut(s) 876
BshFI GGCC 7 cut(s) 131, 149, 191, 212, 264, 402, 864
BshNI GGYRCC 1 cut(s) 682
BsiHKAI GWGCWC 2 cut(s) 84, 383
BsiSI CCGG 7 cut(s) 11, 386, 650, 680, 686, 744, 907
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 8 cut(s) 11, 139, 207, 208, 286, 656, 685, 692
BsmAI GTCTC 3 cut(s) 73, 315, 539
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 7 cut(s) 131, 149, 191, 212, 264, 402, 864
Bso31I GGTCTC 1 cut(s) 539
Bsp119I TTCGAA 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 84, 383
Bsp1407I TGTACA 1 cut(s) 922
Bsp143I GATC 2 cut(s) 496, 935
BspACI CCGC 7 cut(s) 72, 399, 451, 471, 674, 789, 861
BspANI GGCC 7 cut(s) 131, 149, 191, 212, 264, 402, 864
BspFNI CGCG 1 cut(s) 876
BspHI TCATGA 2 cut(s) 330, 537
BspLI GGNNCC 3 cut(s) 265, 684, 748
BspMI ACCTGC 2 cut(s) 94, 403
BspPI GGATC 1 cut(s) 491
BspT104I TTCGAA 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 682
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 2 cut(s) 90, 879
BsrFI RCCGGY 2 cut(s) 649, 685
BsrGI TGTACA 1 cut(s) 922
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 2 cut(s) 649, 685
BssECI CCNNGG 5 cut(s) 229, 342, 386, 466, 503
BssMI GATC 2 cut(s) 496, 935
BssNI GRCGYC 2 cut(s) 324, 363
BssT1I CCWWGG 2 cut(s) 229, 466
Bst2UI CCWGG 3 cut(s) 128, 504, 866
Bst4CI ACNGT 6 cut(s) 568, 670, 751, 766, 772, 842
BstACI GRCGYC 2 cut(s) 324, 363
BstAPI GCANNNNNTGC 3 cut(s) 459, 646, 682
BstAUI TGTACA 1 cut(s) 922
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 4 cut(s) 189, 383, 600, 687
BstDEI CTNAG 2 cut(s) 781, 939
BstF5I GGATG 3 cut(s) 661, 697, 809
BstFNI CGCG 1 cut(s) 876
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 5 cut(s) 115, 227, 464, 640, 878
BstKTI GATC 2 cut(s) 499, 938
BstMAI GTCTC 3 cut(s) 73, 315, 539
BstMBI GATC 2 cut(s) 496, 935
BstMWI GCNNNNNNNGC 8 cut(s) 26, 197, 270, 459, 468, 646, 682, 875
BstNI CCWGG 3 cut(s) 128, 504, 866
BstSCI CCNGG 6 cut(s) 10, 126, 385, 502, 678, 864
BstSFI CTRYAG 1 cut(s) 841
BstSLI GKGCMC 1 cut(s) 383
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 4 cut(s) 32, 112, 459, 583
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 935
BstYI RGATCY 1 cut(s) 935
BsuRI GGCC 7 cut(s) 131, 149, 191, 212, 264, 402, 864
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 661, 697, 809
BtsIMutI CAGTG 3 cut(s) 212, 573, 675
BveI ACCTGC 2 cut(s) 94, 403
Cac8I GCNNGC 4 cut(s) 189, 383, 600, 687
CciI TCATGA 2 cut(s) 330, 537
CfoI GCGC 5 cut(s) 115, 227, 464, 640, 878
Cfr10I RCCGGY 2 cut(s) 649, 685
Cfr13I GGNCC 5 cut(s) 130, 147, 210, 263, 339
CseI GACGC 2 cut(s) 332, 604
Csp6I GTAC 1 cut(s) 923
CviAII CATG 3 cut(s) 151, 331, 538
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 2 cut(s) 781, 939
DpnI GATC 2 cut(s) 498, 937
DpnII GATC 2 cut(s) 496, 935
DraIII CACNNNGTG 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 362
DriI GACNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 2 cut(s) 189, 400
Eam1105I GACNNNNNGTC 1 cut(s) 367
EciI GGCGGA 2 cut(s) 61, 486
Eco130I CCWWGG 2 cut(s) 229, 466
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 126, 502, 864
EcoT14I CCWWGG 2 cut(s) 229, 466
ErhI CCWWGG 2 cut(s) 229, 466
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 3 cut(s) 154, 334, 541
FaiI YATR 6 cut(s) 152, 332, 495, 539, 902, 932
FaqI GGGAC 1 cut(s) 191
FatI CATG 3 cut(s) 150, 330, 537
FauI CCCGC 1 cut(s) 796
Fnu4HI GCNGC 8 cut(s) 21, 101, 400, 448, 451, 572, 674, 862
FokI GGATG 3 cut(s) 648, 684, 796
Fsp4HI GCNGC 8 cut(s) 21, 101, 400, 448, 451, 572, 674, 862
FspBI CTAG 1 cut(s) 318
GlaI GCGC 5 cut(s) 114, 226, 463, 639, 877
GluI GCNGC 8 cut(s) 21, 101, 400, 448, 451, 572, 674, 862
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 7 cut(s) 131, 149, 191, 212, 264, 402, 864
HapII CCGG 7 cut(s) 11, 386, 650, 680, 686, 744, 907
HgaI GACGC 2 cut(s) 332, 604
HhaI GCGC 5 cut(s) 115, 227, 464, 640, 878
Hin1I GRCGYC 2 cut(s) 324, 363
Hin1II CATG 3 cut(s) 154, 334, 541
Hin6I GCGC 5 cut(s) 113, 225, 462, 638, 876
HinP1I GCGC 5 cut(s) 113, 225, 462, 638, 876
HincII GTYRAC 2 cut(s) 375, 823
HindII GTYRAC 2 cut(s) 375, 823
HinfI GANTC 2 cut(s) 518, 541
HpaII CCGG 7 cut(s) 11, 386, 650, 680, 686, 744, 907
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 6 cut(s) 339, 375, 381, 823, 838, 923
Hpy188I TCNGA 2 cut(s) 666, 702
Hpy188III TCNNGA 2 cut(s) 331, 538
Hpy8I GTNNAC 6 cut(s) 339, 375, 381, 823, 838, 923
Hpy99I CGWCG 4 cut(s) 29, 365, 818, 821
HpyAV CCTTC 1 cut(s) 556
HpyCH4III ACNGT 6 cut(s) 568, 670, 751, 766, 772, 842
HpyCH4IV ACGT 3 cut(s) 363, 377, 825
HpyCH4V TGCA 3 cut(s) 381, 447, 571
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 197, 270, 459, 468, 646, 682, 875
HpyF3I CTNAG 2 cut(s) 781, 939
HpySE526I ACGT 3 cut(s) 363, 377, 825
Hsp92I GRCGYC 2 cut(s) 324, 363
Hsp92II CATG 3 cut(s) 154, 334, 541
HspAI GCGC 5 cut(s) 113, 225, 462, 638, 876
KroI GCCGGC 1 cut(s) 685
KroNI GCCGGC 1 cut(s) 687
Kzo9I GATC 2 cut(s) 496, 935
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 4 cut(s) 32, 112, 459, 583
LweI GCATC 4 cut(s) 156, 462, 636, 818
MaeI CTAG 1 cut(s) 318
MaeII ACGT 3 cut(s) 363, 377, 825
MaeIII GTNAC 6 cut(s) 106, 248, 592, 760, 766, 772
MalI GATC 2 cut(s) 498, 937
MboI GATC 2 cut(s) 496, 935
MboII GAAGA 1 cut(s) 229
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 2 cut(s) 84, 383
MluCI AATT 4 cut(s) 33, 490, 508, 897
MmeI TCCRAC 2 cut(s) 282, 689
MroNI GCCGGC 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 2 cut(s) 803, 911
MslI CAYNNNNRTG 1 cut(s) 722
MspI CCGG 7 cut(s) 11, 386, 650, 680, 686, 744, 907
MspR9I CCNGG 6 cut(s) 12, 128, 387, 504, 680, 866
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 3 cut(s) 128, 504, 866
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 8 cut(s) 26, 197, 270, 459, 468, 646, 682, 875
NaeI GCCGGC 1 cut(s) 687
NciI CCSGG 3 cut(s) 12, 387, 680
NdeII GATC 2 cut(s) 496, 935
NgoMIV GCCGGC 1 cut(s) 685
NlaIII CATG 3 cut(s) 154, 334, 541
NlaIV GGNNCC 3 cut(s) 265, 684, 748
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 106, 592
NspV TTCGAA 1 cut(s) 521
PagI TCATGA 2 cut(s) 330, 537
PaqCI CACCTGC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 4 cut(s) 360, 813, 822, 831
PctI GAATGC 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 518, 541
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 8 cut(s) 22, 102, 401, 449, 452, 573, 675, 863
PsiI TTATAA 1 cut(s) 932
Psp6I CCWGG 3 cut(s) 126, 502, 864
PspGI CCWGG 3 cut(s) 126, 502, 864
PspN4I GGNNCC 3 cut(s) 265, 684, 748
PspPI GGNCC 5 cut(s) 130, 147, 210, 263, 339
PsuI RGATCY 1 cut(s) 935
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 2 cut(s) 803, 911
SatI GCNGC 8 cut(s) 21, 101, 400, 448, 451, 572, 674, 862
Sau3AI GATC 2 cut(s) 496, 935
Sau96I GGNCC 5 cut(s) 130, 147, 210, 263, 339
ScrFI CCNGG 6 cut(s) 12, 128, 387, 504, 680, 866
SduI GDGCHC 2 cut(s) 84, 383
SfaNI GCATC 4 cut(s) 156, 462, 636, 818
SfcI CTRYAG 1 cut(s) 841
SfuI TTCGAA 1 cut(s) 521
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 722
Sse9I AATT 4 cut(s) 33, 490, 508, 897
SsiI CCGC 7 cut(s) 72, 399, 451, 471, 674, 789, 861
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 6 cut(s) 10, 126, 385, 502, 678, 864
StyI CCWWGG 2 cut(s) 229, 466
TaaI ACNGT 6 cut(s) 568, 670, 751, 766, 772, 842
TaiI ACGT 3 cut(s) 366, 380, 828
TaqI TCGA 3 cut(s) 16, 360, 521
TaqII GACCGA 1 cut(s) 356
TasI AATT 4 cut(s) 33, 490, 508, 897
TatI WGTACW 1 cut(s) 922
TauI GCSGC 4 cut(s) 402, 453, 676, 864
TfiI GAWTC 2 cut(s) 518, 541
Tru1I TTAA 2 cut(s) 803, 911
Tru9I TTAA 2 cut(s) 803, 911
TscAI CASTG 3 cut(s) 212, 573, 675
TseFI GTSAC 2 cut(s) 106, 592
TseI GCWGC 4 cut(s) 20, 100, 447, 571
Tsp45I GTSAC 2 cut(s) 106, 592
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 3 cut(s) 212, 573, 675
Tth111I GACNNNGTC 1 cut(s) 326
VneI GTGCAC 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 1 cut(s) 318
ZraI GACGTC 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.