Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015713

Physical Location & Seq

Genomic Coordinates Forward (+)

27212174 .. 27214073

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCTGCTTCATCCTCACCTCTCCATGTAGTAATCTTCCCATTCATGGCTCAAGGCCACACTCTTCCATTGCTAGACATATCCAAGGCATTATCATTCCGTGGCCTCAAAGTAACCATCATCACCACCCCATTAAACGCACCGTTCATCCACTCCAAAGTCTCAGACCGCATCTCATCAATCTCAGTCTCAGTCATCCCATTTCGAATTGTTCCAGACTTGCCACAAGGCTGTGAAAACACTGCTAATCTTCCTTCGGTGTGGCTAGACATATTAGCTTCATTCATCACAGCCACCAAAAACATGAAGCAGCATTTTGAAGCTCTTCTTAAGGAGATGGTCGAAACTGGTTCCCGCCCAATTTGTGTAATCTCTGACTTCTTCCTCTCTTGGACTCTCGACACATGTCGCTCTTTTAACATTCCTAGGGTTGTGTGTCATGGAATGGGGGTGTTACCCATGTTTTCCGACCCATGCAAAACGTCGTCTGAGTTTGACGTTATAGAGTTACCGAGTTTGACACTTCCATTCACATTGAACGGGTCAGACCTGCCCGTTTGTGACCCTGATGACCTGTTTATCCGGGTCATATTAGAGGTTGAGGAAGCAGACAAGAATAGCTGGGGTGTGATTGTGAAAAGCTTTCAAGAGCTTGAAGGTGAGTATGTGACTGCATTGGAAGGTTTGTACCACAAAGAGGCCAAGGCATGGTGCGTGGGGCCGGTTTTGCTCTATGATTATATTCAAGAGCAATCTGGAGCGTCCGATGGTAAGAGTCAATTTTGCGGTCCATACATCGAGTGGCTGGATAAGCAAGAGGGATCTAGTGTGGTGATCTACGTGTCGTTTGGTACGCAAGTGAGATTGTCCAAGGAACAGATGGACGAGATTGCTTATGGACTAGAGATGGTAGACCAGCGGAGTATCCTAGCGCACCCGAAGGTGGGCGGGTTTGTGAGTCATTGTGGGTGGAACTCGGTGTTGGAGAGCTTGTTAATGGGGGTGCCATTGAACGCCAAGTTCGTTGCAATGGGGCTCAAAGCAGGGCTGATGGTTTCAGAAGAGAGGGTCAAGACTATTGATAGGCATGTGATAGGTGATGGAGTGAAGGAGTTGATGGAAGGTGAGAAAGGGAGGAGTGCTAGGGAAAGGGCAAGAGAATTGGGGACAATGGCTTGGAATGCTGTATCTGAAGCAAAGTTGATATGGATTGATCGGCTAGGGCTTGACATGCGTCTTTGGTCTCCTCAGAATGGTATTTTTGAGGTTCGCATTCCCTTCCCCAGAGATGTGACGGATGAAAAAGGAGCAAAGTCAATGTTTAATTGTATGGCGCAATTAGCATGGGAGGTCGAAAAGAATTTCCATGCCCCAGATTTTGAGAAGGTGAAACAAGTAAAGCAGATAACCAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

472

Amino Acids

52.61

Weight (kDa)

5.36

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	9 - 242	3.3e-11	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	305 - 337	4.1e-07	UDP-glucoronosyl and UDP-glucosyl transferase
DUF2470	PF10615	393 - 440	8.4e-06	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015713)

Species	Orthologous Gene IDs
malus_domestica	MD17G1145300.v1.1
prunus_persica	Prupe.3G166800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0150071 RchiOBHm_Chr3g0481151 RchiOBHm_Chr3g0481171
rosa_laevigata	RLG00000020463 RLG00000023417
rosa_multiflora	Rmu_sc0001169.1_g000005 Rmu_sc0009445.1_g000012 Rmu_sc0009445.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097460
rosa_rugosa	Rorug02G0418300
rosa_samantha	Rh2AG477600 Rh2BG489900 Rh2CG463400
rosa_wichuraiana	Rw2G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	1003
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	5 cut(s)	169, 355, 786, 919, 948
AclWI	GGATC	1 cut(s)	829
AcsI	RAATTY	1 cut(s)	1360
AcuI	CTGAAG	1 cut(s)	1212
AfaI	GTAC	2 cut(s)	689, 853
AfiI	CCNNNNNNNGG	6 cut(s)	46, 697, 708, 943, 944, 1253
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	404, 840
AgsI	TTSAA	6 cut(s)	320, 538, 647, 656, 746, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AluBI	AGCT	6 cut(s)	278, 323, 621, 642, 652, 990
AluI	AGCT	6 cut(s)	278, 323, 621, 642, 652, 990
Alw26I	GTCTC	3 cut(s)	166, 193, 1248
AlwI	GGATC	1 cut(s)	829
AoxI	GGCC	4 cut(s)	55, 103, 699, 719
ApeKI	GCWGC	2 cut(s)	5, 310
ApoI	RAATTY	1 cut(s)	1360
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	934, 1336
AspS9I	GGNCC	2 cut(s)	719, 788
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	7 cut(s)	9, 115, 671, 844, 1109, 1136, 1399
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	788
AvrII	CCTAGG	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BanI	GGYRCC	1 cut(s)	1003
BanII	GRGCYC	1 cut(s)	1038
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	8 cut(s)	125, 331, 761, 874, 901, 1045, 1094, 1111
BciVI	GTATCC	1 cut(s)	935
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	3 cut(s)	166, 193, 1248
BfaI	CTAG	8 cut(s)	74, 266, 426, 825, 902, 929, 1143, 1220
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	935
BisI	GCNGC	2 cut(s)	6, 311
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	7, 312
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	719, 788
BmiI	GGNNCC	3 cut(s)	352, 720, 1005
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	180
BoxI	GACNNNNGTC	2 cut(s)	405, 1233
BpmI	CTGGAG	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	841
BsaI	GGTCTC	1 cut(s)	1248
BsaJI	CCNNGG	5 cut(s)	84, 100, 425, 702, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	977, 1007
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 697, 708, 943, 944, 1253
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	68, 1035
BseDI	CCNNGG	5 cut(s)	84, 100, 425, 702, 870
BseGI	GGATG	4 cut(s)	11, 147, 195, 1303
BseLI	CCNNNNNNNGG	6 cut(s)	46, 697, 708, 943, 944, 1253
BseMI	GCAATG	2 cut(s)	68, 1035
BseMII	CTCAG	5 cut(s)	177, 198, 204, 480, 1262
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	1150, 1236
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	621
BshFI	GGCC	4 cut(s)	57, 105, 701, 721
BshNI	GGYRCC	1 cut(s)	1003
BsiSI	CCGG	2 cut(s)	583, 722
BslFI	GGGAC	1 cut(s)	1180
BslI	CCNNNNNNNGG	6 cut(s)	46, 697, 708, 943, 944, 1253
BsmAI	GTCTC	3 cut(s)	166, 193, 1248
BsmFI	GGGAC	1 cut(s)	1180
BsmI	GAATGC	2 cut(s)	1186, 1272
BsnI	GGCC	4 cut(s)	57, 105, 701, 721
Bso31I	GGTCTC	1 cut(s)	1248
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	1038
Bsp143I	GATC	3 cut(s)	821, 834, 1213
BspACI	CCGC	5 cut(s)	169, 355, 786, 919, 948
BspANI	GGCC	4 cut(s)	57, 105, 701, 721
BspCNI	CTCAG	5 cut(s)	176, 197, 203, 481, 1261
BspLI	GGNNCC	3 cut(s)	352, 720, 1005
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	829
BspQI	GCTCTTC	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	1003
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	1248
BsrDI	GCAATG	2 cut(s)	68, 1035
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	5 cut(s)	84, 100, 425, 702, 870
BssMI	GATC	3 cut(s)	821, 834, 1213
BssT1I	CCWWGG	4 cut(s)	84, 425, 702, 870
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	3 cut(s)	69, 330, 1056
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	205
BstDEI	CTNAG	5 cut(s)	163, 184, 190, 489, 1248
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	11, 147, 195, 1303
BstHHI	GCGC	2 cut(s)	934, 1336
BstKTI	GATC	3 cut(s)	824, 837, 1216
BstMAI	GTCTC	3 cut(s)	166, 193, 1248
BstMBI	GATC	3 cut(s)	821, 834, 1213
BstMWI	GCNNNNNNNGC	5 cut(s)	727, 811, 1181, 1231, 1340
BstNSI	RCATGY	3 cut(s)	408, 1091, 1234
BstPAI	GACNNNNGTC	2 cut(s)	405, 1233
BstSCI	CCNGG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	821
BstYI	RGATCY	1 cut(s)	821
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	4 cut(s)	57, 105, 701, 721
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	11, 147, 195, 1303
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	558
CfoI	GCGC	2 cut(s)	934, 1336
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	719, 788
CseI	GACGC	2 cut(s)	750, 1223
Csp6I	GTAC	2 cut(s)	688, 852
CviQI	GTAC	2 cut(s)	688, 852
DdeI	CTNAG	5 cut(s)	163, 184, 190, 489, 1248
DpnI	GATC	3 cut(s)	823, 836, 1215
DpnII	GATC	3 cut(s)	821, 834, 1213
Eam1104I	CTCTTC	3 cut(s)	69, 330, 1056
EarI	CTCTTC	3 cut(s)	69, 330, 1056
Eco130I	CCWWGG	4 cut(s)	84, 425, 702, 870
Eco24I	GRGCYC	1 cut(s)	1038
Eco31I	GGTCTC	1 cut(s)	1248
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	1 cut(s)	1212
EcoT14I	CCWWGG	4 cut(s)	84, 425, 702, 870
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	4 cut(s)	84, 425, 702, 870
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	1180
FauI	CCCGC	2 cut(s)	362, 941
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	6, 311
FokI	GGATG	3 cut(s)	134, 182, 1310
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	2 cut(s)	6, 311
FspBI	CTAG	8 cut(s)	74, 266, 426, 825, 902, 929, 1143, 1220
GlaI	GCGC	2 cut(s)	933, 1335
GluI	GCNGC	2 cut(s)	6, 311
GsaI	CCCAGC	1 cut(s)	625
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	4 cut(s)	57, 105, 701, 721
HapII	CCGG	2 cut(s)	583, 722
HgaI	GACGC	2 cut(s)	750, 1223
HhaI	GCGC	2 cut(s)	934, 1336
Hin6I	GCGC	2 cut(s)	932, 1334
HinP1I	GCGC	2 cut(s)	932, 1334
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	3 cut(s)	394, 775, 958
HpaII	CCGG	2 cut(s)	583, 722
HphI	GGTGA	7 cut(s)	9, 115, 671, 844, 1109, 1136, 1399
Hpy166II	GTNNAC	1 cut(s)	913
Hpy188I	TCNGA	9 cut(s)	166, 376, 469, 490, 547, 766, 1060, 1192, 1251
Hpy188III	TCNNGA	6 cut(s)	215, 398, 647, 746, 756, 1072
Hpy8I	GTNNAC	1 cut(s)	913
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	8 cut(s)	264, 650, 674, 934, 1102, 1115, 1288, 1378
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	3 cut(s)	482, 498, 840
HpyCH4V	TGCA	3 cut(s)	477, 674, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	727, 811, 1181, 1231, 1340
HpyF3I	CTNAG	5 cut(s)	163, 184, 190, 489, 1248
HpySE526I	ACGT	3 cut(s)	482, 498, 840
HspAI	GCGC	2 cut(s)	932, 1334
Kzo9I	GATC	3 cut(s)	821, 834, 1213
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	758, 1307
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	8 cut(s)	74, 266, 426, 825, 902, 929, 1143, 1220
MaeII	ACGT	3 cut(s)	482, 498, 840
MaeIII	GTNAC	6 cut(s)	112, 453, 507, 560, 667, 1291
MalI	GATC	3 cut(s)	823, 836, 1215
MboI	GATC	3 cut(s)	821, 834, 1213
MboII	GAAGA	6 cut(s)	28, 56, 242, 317, 373, 1073
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	1 cut(s)	1038
MluCI	AATT	7 cut(s)	207, 360, 779, 1160, 1324, 1337, 1360
MlyI	GAGTC	3 cut(s)	388, 784, 967
MmeI	TCCRAC	2 cut(s)	492, 963
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	5 cut(s)	134, 330, 417, 995, 1323
MspA1I	CMGCKG	1 cut(s)	919
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	583, 722
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	2 cut(s)	1186, 1272
MwoI	GCNNNNNNNGC	5 cut(s)	727, 811, 1181, 1231, 1340
NciI	CCSGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	821, 834, 1213
NlaIV	GGNNCC	3 cut(s)	352, 720, 1005
NmuCI	GTSAC	3 cut(s)	560, 667, 1291
NspI	RCATGY	3 cut(s)	408, 1091, 1234
NspV	TTCGAA	1 cut(s)	205
PciI	ACATGT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	1020
PctI	GAATGC	2 cut(s)	1186, 1272
PdmI	GAANNNNTTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	2 cut(s)	7, 312
PleI	GAGTC	3 cut(s)	388, 783, 966
PpsI	GAGTC	3 cut(s)	388, 783, 966
Ppu21I	YACGTR	1 cut(s)	841
PscI	ACATGT	1 cut(s)	404
PshAI	GACNNNNGTC	2 cut(s)	405, 1233
PspFI	CCCAGC	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	352, 720, 1005
PspPI	GGNCC	2 cut(s)	719, 788
PsuI	RGATCY	1 cut(s)	821
RsaI	GTAC	2 cut(s)	689, 853
RsaNI	GTAC	2 cut(s)	688, 852
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	5 cut(s)	134, 330, 417, 995, 1323
SatI	GCNGC	2 cut(s)	6, 311
Sau3AI	GATC	3 cut(s)	821, 834, 1213
Sau96I	GGNCC	2 cut(s)	719, 788
SchI	GAGTC	3 cut(s)	388, 784, 967
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	1038
SfaNI	GCATC	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	51, 329
SmoI	CTYRAG	2 cut(s)	51, 329
Sse9I	AATT	7 cut(s)	207, 360, 779, 1160, 1324, 1337, 1360
SsiI	CCGC	5 cut(s)	169, 355, 786, 919, 948
SspMI	CTAG	8 cut(s)	74, 266, 426, 825, 902, 929, 1143, 1220
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	4 cut(s)	84, 425, 702, 870
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	3 cut(s)	485, 501, 843
TaqI	TCGA	5 cut(s)	205, 342, 399, 798, 1353
TasI	AATT	7 cut(s)	207, 360, 779, 1160, 1324, 1337, 1360
Tru1I	TTAA	5 cut(s)	134, 330, 417, 995, 1323
Tru9I	TTAA	5 cut(s)	134, 330, 417, 995, 1323
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	3 cut(s)	560, 667, 1291
TseI	GCWGC	2 cut(s)	5, 310
Tsp45I	GTSAC	3 cut(s)	560, 667, 1291
TspDTI	ATGAA	6 cut(s)	34, 136, 270, 274, 320, 1314
TspGWI	ACGGA	2 cut(s)	89, 1310
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	708
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	1 cut(s)	1360
XceI	RCATGY	3 cut(s)	408, 1091, 1234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	798, 877
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	912
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	8 cut(s)	74, 266, 426, 825, 902, 929, 1143, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.