Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015713

Physical Location & Seq

Genomic Coordinates Reverse (-)

18668830 .. 18670242

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCTGCTTCATCCTCACCTCTCCATGTAGTAATCTTCCCATTCATGGCTCAAGGCCACACTCTTCCATTGCTAGACATATCCAAGGCATTATCATTCCGTGGCCTCAAAGTAACCATCATCACCACCCCATTAAACGCACCGTTCATCCGCTCCAAAGTCTCAGACCACATCTCATCAATCTCAGTCTCAGTCATCCCATTTCCAATTGTTCCAGACTTGCCACAAGGCTGTGAAAACACTGCTAATCTTCCTTCGGTTTCGCTGGACCTATTGGCTTCCTTCATCACAGCCACTACAAACATGAAGCAGCATTTTGAAGCTCTTCTTAAGGAGATGGTCGAAACTGGTTCCCGCCCAATTTGTGTAATCTCCGACTTCTTCCTCTATTGGACTCTCGACACATGTCGCTCTTTTAACATTCCTAGGGTTGTGTCTCATGGAATGGGGGTGTTACCCATGTTGATTCTCAAGCATAATTCCGACCCATGCAAAACGTCGTCTGAGTTTGACGTTATACAGTTACCGAGTTTGACACTTCCATTCACATTGAACGGGTTCGACCTGCCCGTTTGTGACCCTGATGACCCTTTTATCCGGGTCATATTAGAGGTTGAGGAAGCAGACAAGAACAGCTGGGGTGTGATTGTGAATAGCTTTCAAGAGCTTGAAGGTGAGTATGTGACCGCATTGGAAGGTTTGTACTACAAAGAGGCCAAGGCATGGTGTGTGGGGCCGGTTTTGCTCTATGATTATATTCAAGAGCAATCTGGAGCGTCTGATGGTAAGAGTCAATTTTGCGGTCCATACATCGAGTGGCTGGATAAGCAAGAGGGATCGAGTGTGGTGATCTACGTGTCGTTTGGTACGCAAGCGCGATTGTCCAAGGAGCAGATGGACGAGATTGCTTATGGACTAGAGATGGCGGGGCAACGCTTCATTTGGGTAGTCGGATCATCAGGGATGTGGGTTCCAGATGAAGGATGGGTGAGTAGGGTGGAAGGGAGAGGGTTGGTTGTACGTGATTGGGTAGACCAGCGGAGTATCCTAGCGCACCCTAAGGTTGGCGGGTTTGTGAGTCATTGTGGGTGGAACTCGGTGTTGGAGAGCTTGTCAATGGGGGTGCCACTATTAGCTTGGCCAATCGGAGCGGAGCAACCATTGAATGCCAAGTTCGTTGCAGTGGGGCTCAAAGCAGGGTTGATGGTTTCAGAAGTGAGGGTCAAGACTATTGATAGGCAAGTGATACGTGATGGAGTGAAGGAGTTGATGGAAGGTGAGAAAGGGAGGAGTGCTAGGGAAAGAGCAAGAGAATTGGGGACAATGGCTTGGAATGCTGTCCAGAAAGGTGGTTCGTCTGATGGAAAGTTGGATGAATTGATCAATCGACTCATTGACATCAAGAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

470

Amino Acids

51.9

Weight (kDa)

5.22

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	9 - 247	3e-12	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	278 - 427	2.3e-20	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015713)

Species	Orthologous Gene IDs
malus_domestica	MD17G1145300.v1.1
prunus_persica	Prupe.3G166800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0150071 RchiOBHm_Chr3g0481151 RchiOBHm_Chr3g0481171
rosa_laevigata	RLG00000020463 RLG00000023417
rosa_multiflora	Rmu_sc0001169.1_g000005 Rmu_sc0009445.1_g000012 Rmu_sc0009445.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097460
rosa_rugosa	Rorug02G0418300
rosa_samantha	Rh2AG477600 Rh2BG489900 Rh2CG463400
rosa_wichuraiana	Rw2G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	1123
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccBSI	CCGCTC	2 cut(s)	153, 1151
AccI	GTMKAC	1 cut(s)	1032
AccII	CGCG	1 cut(s)	877
AciI	CCGC	8 cut(s)	151, 355, 687, 801, 926, 1039, 1068, 1151
AclWI	GGATC	2 cut(s)	844, 961
AcoI	YGGCCR	1 cut(s)	1139
AfaI	GTAC	3 cut(s)	704, 868, 1020
AfiI	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	404, 855
AgsI	TTSAA	6 cut(s)	320, 553, 662, 671, 761, 1165
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AluBI	AGCT	6 cut(s)	323, 636, 657, 667, 1110, 1136
AluI	AGCT	6 cut(s)	323, 636, 657, 667, 1110, 1136
Alw26I	GTCTC	3 cut(s)	166, 193, 441
AlwI	GGATC	2 cut(s)	844, 961
AoxI	GGCC	5 cut(s)	55, 103, 714, 734, 1139
ApeKI	GCWGC	2 cut(s)	5, 310
Asp700I	GAANNNNTTC	2 cut(s)	324, 557
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	877, 1054
AspS9I	GGNCC	3 cut(s)	268, 734, 803
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	6 cut(s)	9, 115, 686, 859, 1000, 1289
AvaII	GGWCC	2 cut(s)	268, 803
AvrII	CCTAGG	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	1059
BalI	TGGCCA	1 cut(s)	1141
BanI	GGYRCC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	1191
BbvI	GCAGC	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	1055
BclI	TGATCA	1 cut(s)	1380
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	3 cut(s)	166, 193, 441
BfaI	CTAG	5 cut(s)	74, 426, 917, 1049, 1296
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	573
BfuI	GTATCC	1 cut(s)	1055
BisI	GCNGC	2 cut(s)	6, 311
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	7, 312
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	2 cut(s)	268, 803
BmgT120I	GGNCC	3 cut(s)	268, 734, 803
BmiI	GGNNCC	4 cut(s)	352, 735, 972, 1125
BmrFI	CCNGG	1 cut(s)	599
BoxI	GACNNNNGTC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	36, 455
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	3 cut(s)	856, 1022, 1250
BsaJI	CCNNGG	5 cut(s)	84, 100, 425, 717, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	1097, 1127
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	1 cut(s)	352
Bse21I	CCTNAGG	1 cut(s)	1059
Bse3DI	GCAATG	1 cut(s)	68
BseDI	CCNNGG	5 cut(s)	84, 100, 425, 717, 885
BseGI	GGATG	6 cut(s)	11, 147, 195, 969, 989, 1378
BseLI	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	4 cut(s)	177, 198, 204, 495
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	1303
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	877
BshFI	GGCC	5 cut(s)	57, 105, 716, 736, 1141
BshNI	GGYRCC	1 cut(s)	1123
BsiSI	CCGG	2 cut(s)	598, 737
BslFI	GGGAC	1 cut(s)	1333
BslI	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
BsmAI	GTCTC	3 cut(s)	166, 193, 441
BsmFI	GGGAC	1 cut(s)	1333
BsmI	GAATGC	2 cut(s)	1171, 1339
BsnI	GGCC	5 cut(s)	57, 105, 716, 736, 1141
Bsp1286I	GDGCHC	1 cut(s)	1191
Bsp143I	GATC	4 cut(s)	836, 849, 953, 1380
BspACI	CCGC	8 cut(s)	151, 355, 687, 801, 926, 1039, 1068, 1151
BspANI	GGCC	5 cut(s)	57, 105, 716, 736, 1141
BspCNI	CTCAG	4 cut(s)	176, 197, 203, 496
BspFNI	CGCG	1 cut(s)	877
BspLI	GGNNCC	4 cut(s)	352, 735, 972, 1125
BspMI	ACCTGC	1 cut(s)	573
BspPI	GGATC	2 cut(s)	844, 961
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	1123
BspTI	CTTAAG	1 cut(s)	329
BsrBI	CCGCTC	2 cut(s)	153, 1151
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	736
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	5 cut(s)	84, 100, 425, 717, 885
BssMI	GATC	4 cut(s)	836, 849, 953, 1380
BssT1I	CCWWGG	4 cut(s)	84, 425, 717, 885
Bst4CI	ACNGT	2 cut(s)	144, 522
Bst6I	CTCTTC	2 cut(s)	69, 330
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	3 cut(s)	856, 1022, 1250
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	5 cut(s)	163, 184, 190, 504, 1059
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	6 cut(s)	11, 147, 195, 969, 989, 1378
BstFNI	CGCG	1 cut(s)	877
BstHHI	GCGC	2 cut(s)	877, 1054
BstKTI	GATC	4 cut(s)	839, 852, 956, 1383
BstMAI	GTCTC	3 cut(s)	166, 193, 441
BstMBI	GATC	4 cut(s)	836, 849, 953, 1380
BstMWI	GCNNNNNNNGC	3 cut(s)	742, 826, 1334
BstNSI	RCATGY	1 cut(s)	408
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	877
BstV1I	GCAGC	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	1349
Bsu36I	CCTNAGG	1 cut(s)	1059
BsuI	GTATCC	1 cut(s)	1055
BsuRI	GGCC	5 cut(s)	57, 105, 716, 736, 1141
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	6 cut(s)	11, 147, 195, 969, 989, 1378
BtsI	GCAGTG	2 cut(s)	240, 1188
BtsIMutI	CAGTG	2 cut(s)	240, 1188
BveI	ACCTGC	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	873
CfoI	GCGC	2 cut(s)	877, 1054
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	268, 734, 803
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	3 cut(s)	703, 867, 1019
CviAII	CATG	8 cut(s)	26, 46, 304, 405, 440, 460, 489, 723
CviQI	GTAC	3 cut(s)	703, 867, 1019
DdeI	CTNAG	5 cut(s)	163, 184, 190, 504, 1059
DpnI	GATC	4 cut(s)	838, 851, 955, 1382
DpnII	GATC	4 cut(s)	836, 849, 953, 1380
EaeI	YGGCCR	1 cut(s)	1139
Eam1104I	CTCTTC	2 cut(s)	69, 330
EarI	CTCTTC	2 cut(s)	69, 330
Eco130I	CCWWGG	4 cut(s)	84, 425, 717, 885
Eco24I	GRGCYC	1 cut(s)	1191
Eco47I	GGWCC	2 cut(s)	268, 803
Eco81I	CCTNAGG	1 cut(s)	1059
EcoT14I	CCWWGG	4 cut(s)	84, 425, 717, 885
EcoT38I	GRGCYC	1 cut(s)	1191
ErhI	CCWWGG	4 cut(s)	84, 425, 717, 885
FaeI	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	1333
FatI	CATG	8 cut(s)	25, 45, 303, 404, 439, 459, 488, 722
FauI	CCCGC	3 cut(s)	362, 919, 1061
FbaI	TGATCA	1 cut(s)	1380
FblI	GTMKAC	1 cut(s)	1032
Fnu4HI	GCNGC	2 cut(s)	6, 311
FokI	GGATG	5 cut(s)	134, 182, 976, 996, 1385
FriOI	GRGCYC	1 cut(s)	1191
Fsp4HI	GCNGC	2 cut(s)	6, 311
FspBI	CTAG	5 cut(s)	74, 426, 917, 1049, 1296
GlaI	GCGC	2 cut(s)	876, 1053
GluI	GCNGC	2 cut(s)	6, 311
GsaI	CCCAGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	5 cut(s)	57, 105, 716, 736, 1141
HapII	CCGG	2 cut(s)	598, 737
HgaI	GACGC	1 cut(s)	765
HhaI	GCGC	2 cut(s)	877, 1054
Hin1II	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
Hin6I	GCGC	2 cut(s)	875, 1052
HinP1I	GCGC	2 cut(s)	875, 1052
HinfI	GANTC	5 cut(s)	394, 466, 790, 1078, 1389
HpaII	CCGG	2 cut(s)	598, 737
HphI	GGTGA	6 cut(s)	9, 115, 686, 859, 1000, 1289
Hpy166II	GTNNAC	1 cut(s)	1033
Hpy188I	TCNGA	9 cut(s)	166, 376, 484, 505, 781, 953, 1148, 1213, 1360
Hpy188III	TCNNGA	9 cut(s)	215, 398, 662, 761, 771, 974, 1225, 1342, 1402
Hpy8I	GTNNAC	1 cut(s)	1033
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	8 cut(s)	264, 292, 665, 689, 974, 995, 1255, 1268
HpyCH4III	ACNGT	2 cut(s)	144, 522
HpyCH4IV	ACGT	5 cut(s)	497, 513, 855, 1021, 1249
HpyCH4V	TGCA	2 cut(s)	492, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	742, 826, 1334
HpyF3I	CTNAG	5 cut(s)	163, 184, 190, 504, 1059
HpySE526I	ACGT	5 cut(s)	497, 513, 855, 1021, 1249
Hsp92II	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
HspAI	GCGC	2 cut(s)	875, 1052
Ksp22I	TGATCA	1 cut(s)	1380
Kzo9I	GATC	4 cut(s)	836, 849, 953, 1380
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	5 cut(s)	158, 773, 889, 1148, 1153
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	5 cut(s)	74, 426, 917, 1049, 1296
MaeII	ACGT	5 cut(s)	497, 513, 855, 1021, 1249
MaeIII	GTNAC	5 cut(s)	112, 453, 522, 575, 682
MalI	GATC	4 cut(s)	838, 851, 955, 1382
MbiI	CCGCTC	2 cut(s)	153, 1151
MboI	GATC	4 cut(s)	836, 849, 953, 1380
MboII	GAAGA	5 cut(s)	28, 56, 242, 317, 373
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	1191
MlsI	TGGCCA	1 cut(s)	1141
MluCI	AATT	6 cut(s)	207, 360, 478, 794, 1313, 1376
MluNI	TGGCCA	1 cut(s)	1141
MlyI	GAGTC	4 cut(s)	388, 799, 1087, 1383
MmeI	TCCRAC	5 cut(s)	399, 507, 931, 1083, 1350
Mox20I	TGGCCA	1 cut(s)	1141
MroXI	GAANNNNTTC	2 cut(s)	324, 557
MscI	TGGCCA	1 cut(s)	1141
MseI	TTAA	4 cut(s)	134, 330, 417, 1411
Msp20I	TGGCCA	1 cut(s)	1141
MspA1I	CMGCKG	2 cut(s)	636, 1039
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	598, 737
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	2 cut(s)	1171, 1339
MvnI	CGCG	1 cut(s)	877
MwoI	GCNNNNNNNGC	3 cut(s)	742, 826, 1334
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	4 cut(s)	836, 849, 953, 1380
NlaIII	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
NlaIV	GGNNCC	4 cut(s)	352, 735, 972, 1125
NmuCI	GTSAC	2 cut(s)	575, 682
NspI	RCATGY	1 cut(s)	408
PciI	ACATGT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	2 cut(s)	1171, 1339
PdmI	GAANNNNTTC	2 cut(s)	324, 557
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	723
PkrI	GCNGC	2 cut(s)	7, 312
PleI	GAGTC	4 cut(s)	388, 798, 1086, 1383
PpsI	GAGTC	4 cut(s)	388, 798, 1086, 1383
Ppu21I	YACGTR	3 cut(s)	856, 1022, 1250
PscI	ACATGT	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	636
PspN4I	GGNNCC	4 cut(s)	352, 735, 972, 1125
PspPI	GGNCC	3 cut(s)	268, 734, 803
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	3 cut(s)	704, 868, 1020
RsaNI	GTAC	3 cut(s)	703, 867, 1019
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	134, 330, 417, 1411
SatI	GCNGC	2 cut(s)	6, 311
Sau3AI	GATC	4 cut(s)	836, 849, 953, 1380
Sau96I	GGNCC	3 cut(s)	268, 734, 803
SchI	GAGTC	4 cut(s)	388, 799, 1087, 1383
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	1191
SinI	GGWCC	2 cut(s)	268, 803
SmlI	CTYRAG	3 cut(s)	51, 329, 470
SmoI	CTYRAG	3 cut(s)	51, 329, 470
Sse9I	AATT	6 cut(s)	207, 360, 478, 794, 1313, 1376
SsiI	CCGC	8 cut(s)	151, 355, 687, 801, 926, 1039, 1068, 1151
SspMI	CTAG	5 cut(s)	74, 426, 917, 1049, 1296
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	4 cut(s)	84, 425, 717, 885
TaaI	ACNGT	2 cut(s)	144, 522
TaiI	ACGT	5 cut(s)	500, 516, 858, 1024, 1252
TaqI	TCGA	6 cut(s)	342, 399, 561, 813, 839, 1387
TasI	AATT	6 cut(s)	207, 360, 478, 794, 1313, 1376
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	4 cut(s)	134, 330, 417, 1411
Tru9I	TTAA	4 cut(s)	134, 330, 417, 1411
TscAI	CASTG	2 cut(s)	247, 1188
TseFI	GTSAC	2 cut(s)	575, 682
TseI	GCWGC	2 cut(s)	5, 310
Tsp45I	GTSAC	2 cut(s)	575, 682
TspDTI	ATGAA	7 cut(s)	34, 136, 274, 320, 928, 993, 1389
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	247, 1188
Van91I	CCANNNNNTGG	1 cut(s)	723
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	268, 803
XceI	RCATGY	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	4 cut(s)	813, 892, 981, 1134
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	1032
XmnI	GAANNNNTTC	2 cut(s)	324, 557
XspI	CTAG	5 cut(s)	74, 426, 917, 1049, 1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.