Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009445.1

Orthogroup ID

OG0015713

Physical Location & Seq

Genomic Coordinates Forward (+)

66172 .. 67527

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009445.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atggctgcttcatcctcacctccccatgtagtaatcttcccattcatggctcaaggtcacactcttccattgctagacatatccaaggcattatcattccgtggcctcaaagtaaccatcatcacgaccccattaaacgcaccgttcatccactccaaagtctcagaccacatctcaatgatctcatcaatctcagtcttagtcatcccatttccaattgttccagacttgccacaaggctgtgaaaacaccgctaatcttccttcggtttcgctagacatattagcttccttcatcacagccaccaaaaacatgaagcagcattttgaagctcttcttaaggagatggtcgaaactggttcccgcccaatttgtgtattctccgacttcttcctctattggactctcgacacatgtcgcacttttggcattcctagggttgtgtctcatggaatgggggtgttacccatgttgattctcaagcataattccgacacatgcaaaacgtcgtctgagtttgacgttatagagttaccgagtttgacacttccattcacattgaacgggtcagacctgcccgtttgtgaccctgatgacccctttaccagggtcatattagaggttgaggaagcagacaagaacagctggggtgtgattgtgaatagctttcaagagcttgaaggtgagtacgtgaccgcattggaaggtttgtactacaaagaggccagggcatggtgtgtggggccagttttgctctacgattatattcaagagcaatctagagcgtctgatggtaagagtcaatcctgcggtccgtacatcgagtggctggataagcaagagggatccagtgtggtgatctatgtgtcatttggtacacaagcgcgattgtccaacgaacagatggacgagattgcttatggactagagatggcgaggcaacgcttcatttgggtcgttggatcattagggatgtgggttccagatgaaggatgggtgagaagggtggaagggagagggttggttgtacgtgattgggtagaccagcggagtatcctagcgcaccctaaggtgggcgggtttgtgagtcattgtgggtggaactcggtgttggagagcttgtcaatgggggtgccactattagcttggccaaatcaaagcattattaacatgagaatgagggtctctcttgctaggtgggtgttaacatttgggcatcagtttctattgcagcttgaccaatactcagctacaagtttggaggataggaattggtatccaagagctttgagggttcttcatactccaccagcttccctacatattcaaacaaatccacattatagatcagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

451

Amino Acids

50.55

Weight (kDa)

5.63

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015713)

Species	Orthologous Gene IDs
malus_domestica	MD17G1145300.v1.1
prunus_persica	Prupe.3G166800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0150071 RchiOBHm_Chr3g0481151 RchiOBHm_Chr3g0481171
rosa_laevigata	RLG00000020463 RLG00000023417
rosa_multiflora	Rmu_sc0001169.1_g000005 Rmu_sc0009445.1_g000012 Rmu_sc0009445.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097460
rosa_rugosa	Rorug02G0418300
rosa_samantha	Rh2AG477600 Rh2BG489900 Rh2CG463400
rosa_wichuraiana	Rw2G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	1132
AccB7I	CCANNNNNTGG	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	1041
AccII	CGCG	1 cut(s)	886
AciI	CCGC	6 cut(s)	252, 364, 696, 810, 1048, 1077
AclWI	GGATC	3 cut(s)	840, 853, 970
AcoI	YGGCCR	1 cut(s)	1148
AfaI	GTAC	5 cut(s)	689, 713, 818, 877, 1029
AfiI	CCNNNNNNNGG	6 cut(s)	46, 606, 732, 989, 1072, 1073
AflII	CTTAAG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	329, 562, 671, 680, 770, 1328
AjnI	CCWGG	2 cut(s)	605, 725
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
Alw26I	GTCTC	3 cut(s)	166, 450, 1189
AlwI	GGATC	3 cut(s)	840, 853, 970
AoxI	GGCC	4 cut(s)	103, 723, 743, 1148
ApeKI	GCWGC	3 cut(s)	5, 319, 1231
Asp700I	GAANNNNTTC	1 cut(s)	333
AspA2I	CCTAGG	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	886, 1063
AspS9I	GGNCC	2 cut(s)	743, 812
AsuHPI	GGTGA	4 cut(s)	9, 695, 868, 1009
AvaII	GGWCC	1 cut(s)	812
AvrII	CCTAGG	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	1068
BalI	TGGCCA	1 cut(s)	1150
BamHI	GGATCC	1 cut(s)	845
BanI	GGYRCC	1 cut(s)	1132
BbvI	GCAGC	2 cut(s)	331, 1243
BccI	CCATC	6 cut(s)	125, 340, 785, 898, 925, 987
BciT130I	CCWGG	2 cut(s)	607, 727
BciVI	GTATCC	2 cut(s)	1064, 1287
BcoDI	GTCTC	3 cut(s)	166, 450, 1189
BfaI	CTAG	7 cut(s)	74, 275, 435, 780, 926, 1058, 1194
BfrI	CTTAAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	582
BfuI	GTATCC	2 cut(s)	1064, 1287
BisI	GCNGC	3 cut(s)	6, 320, 1232
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	3 cut(s)	7, 321, 1233
Bme1390I	CCNGG	2 cut(s)	607, 727
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	2 cut(s)	743, 812
BmiI	GGNNCC	5 cut(s)	361, 744, 847, 981, 1134
BmrFI	CCNGG	2 cut(s)	607, 727
BmsI	GCATC	1 cut(s)	1225
BoxI	GACNNNNGTC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	1171, 1203
BpuEI	CTTGAG	2 cut(s)	36, 464
BsaAI	YACGTR	2 cut(s)	691, 1031
BsaI	GGTCTC	1 cut(s)	1189
BsaJI	CCNNGG	5 cut(s)	84, 100, 434, 606, 726
BsaXI	ACNNNNNCTCC	2 cut(s)	1106, 1136
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 606, 732, 989, 1072, 1073
Bse1I	ACTGG	3 cut(s)	361, 746, 849
Bse21I	CCTNAGG	1 cut(s)	1068
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	607, 727
BseDI	CCNNGG	5 cut(s)	84, 100, 434, 606, 726
BseGI	GGATG	5 cut(s)	11, 147, 204, 978, 998
BseLI	CCNNNNNNNGG	6 cut(s)	46, 606, 732, 989, 1072, 1073
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	4 cut(s)	177, 207, 504, 1260
BseNI	ACTGG	3 cut(s)	361, 746, 849
BseXI	GCAGC	2 cut(s)	331, 1243
BseYI	CCCAGC	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	886
BshFI	GGCC	4 cut(s)	105, 725, 745, 1150
BshNI	GGYRCC	1 cut(s)	1132
BslI	CCNNNNNNNGG	6 cut(s)	46, 606, 732, 989, 1072, 1073
BsmAI	GTCTC	3 cut(s)	166, 450, 1189
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	4 cut(s)	105, 725, 745, 1150
Bso31I	GGTCTC	1 cut(s)	1189
Bsp143I	GATC	5 cut(s)	180, 845, 858, 962, 1346
BspACI	CCGC	6 cut(s)	252, 364, 696, 810, 1048, 1077
BspANI	GGCC	4 cut(s)	105, 725, 745, 1150
BspCNI	CTCAG	4 cut(s)	176, 206, 505, 1259
BspFNI	CGCG	1 cut(s)	886
BspLI	GGNNCC	5 cut(s)	361, 744, 847, 981, 1134
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	3 cut(s)	840, 853, 970
BspQI	GCTCTTC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	1132
BspTI	CTTAAG	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	1189
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	3 cut(s)	361, 746, 849
BssECI	CCNNGG	5 cut(s)	84, 100, 434, 606, 726
BssMI	GATC	5 cut(s)	180, 845, 858, 962, 1346
BssT1I	CCWWGG	2 cut(s)	84, 434
Bst2UI	CCWGG	2 cut(s)	607, 727
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	69, 339
BstAFI	CTTAAG	1 cut(s)	338
BstBAI	YACGTR	2 cut(s)	691, 1031
BstDEI	CTNAG	6 cut(s)	163, 193, 199, 513, 1068, 1246
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	604
BstF5I	GGATG	5 cut(s)	11, 147, 204, 978, 998
BstFNI	CGCG	1 cut(s)	886
BstHHI	GCGC	2 cut(s)	886, 1063
BstKTI	GATC	5 cut(s)	183, 848, 861, 965, 1349
BstMAI	GTCTC	3 cut(s)	166, 450, 1189
BstMBI	GATC	5 cut(s)	180, 845, 858, 962, 1346
BstMWI	GCNNNNNNNGC	3 cut(s)	426, 751, 835
BstNI	CCWGG	2 cut(s)	607, 727
BstNSI	RCATGY	2 cut(s)	417, 501
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	605, 725
BstUI	CGCG	1 cut(s)	886
BstV1I	GCAGC	2 cut(s)	331, 1243
BstX2I	RGATCY	1 cut(s)	845
BstYI	RGATCY	1 cut(s)	845
Bsu36I	CCTNAGG	1 cut(s)	1068
BsuI	GTATCC	2 cut(s)	1064, 1287
BsuRI	GGCC	4 cut(s)	105, 725, 745, 1150
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	11, 147, 204, 978, 998
BtsIMutI	CAGTG	1 cut(s)	856
BveI	ACCTGC	1 cut(s)	582
CfoI	GCGC	2 cut(s)	886, 1063
Cfr13I	GGNCC	2 cut(s)	743, 812
CpoI	CGGWCCG	1 cut(s)	812
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	5 cut(s)	688, 712, 817, 876, 1028
CspI	CGGWCCG	1 cut(s)	812
CviAII	CATG	9 cut(s)	26, 46, 313, 414, 449, 469, 498, 732, 1171
CviQI	GTAC	5 cut(s)	688, 712, 817, 876, 1028
DdeI	CTNAG	6 cut(s)	163, 193, 199, 513, 1068, 1246
DpnI	GATC	5 cut(s)	182, 847, 860, 964, 1348
DpnII	GATC	5 cut(s)	180, 845, 858, 962, 1346
EaeI	YGGCCR	1 cut(s)	1148
Eam1104I	CTCTTC	2 cut(s)	69, 339
EarI	CTCTTC	2 cut(s)	69, 339
Eco130I	CCWWGG	2 cut(s)	84, 434
Eco31I	GGTCTC	1 cut(s)	1189
Eco47I	GGWCC	1 cut(s)	812
Eco81I	CCTNAGG	1 cut(s)	1068
EcoNI	CCTNNNNNAGG	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	605, 725
EcoT14I	CCWWGG	2 cut(s)	84, 434
ErhI	CCWWGG	2 cut(s)	84, 434
FaeI	CATG	9 cut(s)	29, 49, 316, 417, 452, 472, 501, 735, 1174
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	9 cut(s)	25, 45, 312, 413, 448, 468, 497, 731, 1170
FauI	CCCGC	2 cut(s)	371, 1070
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	3 cut(s)	6, 320, 1232
FokI	GGATG	4 cut(s)	134, 191, 985, 1005
Fsp4HI	GCNGC	3 cut(s)	6, 320, 1232
FspBI	CTAG	7 cut(s)	74, 275, 435, 780, 926, 1058, 1194
GlaI	GCGC	2 cut(s)	885, 1062
GluI	GCNGC	3 cut(s)	6, 320, 1232
GsaI	CCCAGC	1 cut(s)	649
HaeIII	GGCC	4 cut(s)	105, 725, 745, 1150
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	2 cut(s)	886, 1063
Hin1II	CATG	9 cut(s)	29, 49, 316, 417, 452, 472, 501, 735, 1174
Hin6I	GCGC	2 cut(s)	884, 1061
HinP1I	GCGC	2 cut(s)	884, 1061
HincII	GTYRAC	1 cut(s)	1206
HindII	GTYRAC	1 cut(s)	1206
HinfI	GANTC	4 cut(s)	403, 475, 799, 1087
HpaI	GTTAAC	1 cut(s)	1206
HphI	GGTGA	4 cut(s)	9, 695, 868, 1009
Hpy166II	GTNNAC	3 cut(s)	878, 1042, 1206
Hpy188I	TCNGA	6 cut(s)	166, 385, 493, 514, 571, 790
Hpy188III	TCNNGA	7 cut(s)	124, 224, 407, 671, 770, 780, 983
Hpy8I	GTNNAC	3 cut(s)	878, 1042, 1206
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	7 cut(s)	273, 301, 674, 698, 983, 996, 1004
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	4 cut(s)	506, 522, 690, 1030
HpyCH4V	TGCA	2 cut(s)	501, 1231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	426, 751, 835
HpyF3I	CTNAG	6 cut(s)	163, 193, 199, 513, 1068, 1246
HpySE526I	ACGT	4 cut(s)	506, 522, 690, 1030
Hsp92II	CATG	9 cut(s)	29, 49, 316, 417, 452, 472, 501, 735, 1174
HspAI	GCGC	2 cut(s)	884, 1061
KspAI	GTTAAC	1 cut(s)	1206
Kzo9I	GATC	5 cut(s)	180, 845, 858, 962, 1346
LguI	GCTCTTC	1 cut(s)	339
Lsp1109I	GCAGC	2 cut(s)	331, 1243
LweI	GCATC	1 cut(s)	1225
MaeI	CTAG	7 cut(s)	74, 275, 435, 780, 926, 1058, 1194
MaeII	ACGT	4 cut(s)	506, 522, 690, 1030
MaeIII	GTNAC	6 cut(s)	56, 112, 462, 531, 584, 691
MalI	GATC	5 cut(s)	182, 847, 860, 964, 1348
MboI	GATC	5 cut(s)	180, 845, 858, 962, 1346
MboII	GAAGA	6 cut(s)	28, 56, 251, 326, 382, 1289
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	845
MlsI	TGGCCA	1 cut(s)	1150
MluCI	AATT	4 cut(s)	216, 369, 487, 1270
MluNI	TGGCCA	1 cut(s)	1150
MlyI	GAGTC	3 cut(s)	397, 808, 1096
MmeI	TCCRAC	5 cut(s)	408, 516, 918, 940, 1092
Mox20I	TGGCCA	1 cut(s)	1150
MroXI	GAANNNNTTC	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	1150
MseI	TTAA	4 cut(s)	134, 339, 1167, 1205
MslI	CAYNNNNRTG	2 cut(s)	176, 1175
Msp20I	TGGCCA	1 cut(s)	1150
MspA1I	CMGCKG	2 cut(s)	645, 1048
MspCI	CTTAAG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	607, 727
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	607, 727
MvnI	CGCG	1 cut(s)	886
MwoI	GCNNNNNNNGC	3 cut(s)	426, 751, 835
NdeII	GATC	5 cut(s)	180, 845, 858, 962, 1346
NlaIII	CATG	9 cut(s)	29, 49, 316, 417, 452, 472, 501, 735, 1174
NlaIV	GGNNCC	5 cut(s)	361, 744, 847, 981, 1134
NmuCI	GTSAC	3 cut(s)	56, 584, 691
NspI	RCATGY	2 cut(s)	417, 501
PciI	ACATGT	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	475
PflMI	CCANNNNNTGG	1 cut(s)	732
PkrI	GCNGC	3 cut(s)	7, 321, 1233
PleI	GAGTC	3 cut(s)	397, 807, 1095
PpsI	GAGTC	3 cut(s)	397, 807, 1095
Ppu21I	YACGTR	2 cut(s)	691, 1031
PscI	ACATGT	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	605, 725
PspFI	CCCAGC	1 cut(s)	645
PspGI	CCWGG	2 cut(s)	605, 725
PspN4I	GGNNCC	5 cut(s)	361, 744, 847, 981, 1134
PspPI	GGNCC	2 cut(s)	743, 812
PsuI	RGATCY	1 cut(s)	845
PvuII	CAGCTG	1 cut(s)	645
RsaI	GTAC	5 cut(s)	689, 713, 818, 877, 1029
RsaNI	GTAC	5 cut(s)	688, 712, 817, 876, 1028
RseI	CAYNNNNRTG	2 cut(s)	176, 1175
Rsr2I	CGGWCCG	1 cut(s)	812
RsrII	CGGWCCG	1 cut(s)	812
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	4 cut(s)	134, 339, 1167, 1205
SatI	GCNGC	3 cut(s)	6, 320, 1232
Sau3AI	GATC	5 cut(s)	180, 845, 858, 962, 1346
Sau96I	GGNCC	2 cut(s)	743, 812
SchI	GAGTC	3 cut(s)	397, 808, 1096
ScrFI	CCNGG	2 cut(s)	607, 727
SfaNI	GCATC	1 cut(s)	1225
SinI	GGWCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	2 cut(s)	176, 1175
SmlI	CTYRAG	3 cut(s)	51, 338, 479
SmoI	CTYRAG	3 cut(s)	51, 338, 479
Sse9I	AATT	4 cut(s)	216, 369, 487, 1270
SsiI	CCGC	6 cut(s)	252, 364, 696, 810, 1048, 1077
SspMI	CTAG	7 cut(s)	74, 275, 435, 780, 926, 1058, 1194
StyD4I	CCNGG	2 cut(s)	605, 725
StyI	CCWWGG	2 cut(s)	84, 434
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	4 cut(s)	509, 525, 693, 1033
TaqI	TCGA	3 cut(s)	351, 408, 822
TasI	AATT	4 cut(s)	216, 369, 487, 1270
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	4 cut(s)	134, 339, 1167, 1205
Tru9I	TTAA	4 cut(s)	134, 339, 1167, 1205
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	3 cut(s)	56, 584, 691
TseI	GCWGC	3 cut(s)	5, 319, 1231
Tsp45I	GTSAC	3 cut(s)	56, 584, 691
TspDTI	ATGAA	7 cut(s)	34, 136, 283, 329, 937, 1002, 1289
TspGWI	ACGGA	2 cut(s)	89, 804
TspRI	CASTG	1 cut(s)	856
Van91I	CCANNNNNTGG	1 cut(s)	732
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	604
XbaI	TCTAGA	1 cut(s)	779
XceI	RCATGY	2 cut(s)	417, 501
XcmI	CCANNNNNNNNNTGG	3 cut(s)	901, 990, 1143
XmaJI	CCTAGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	1041
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	7 cut(s)	74, 275, 435, 780, 926, 1058, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.