Rw2G038960

UDP-glycosyltransferase 90A1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
63915404 .. 63916825
1422 bp
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UTR
Exon/CDS
Intron
Rw2G038960.1

Sequence Viewer

Length: 1422 bp
ATGGCTGCTTCATCCTCACCTCCCCATGTAGTAATCTTCCCATTCATGGCTCAAGGTCACACTCTTCCATTGCTAGACATATCCAAGGCATTATCATTCCGTGGCCTCAAAGTAACCATCATCACGACCCCATTAAACGCACCGTTCATCCACTCCAAAGTCTCAGACCACATCTCAATGATCTCATCAATCTCAGTCTTAGTCATCCCATTTCCAATTGTTCCAGACTTGCCACAAGGCTGTGAAAACACCGCTAATCTTCCTTCGGTTTCGCTAGACATATTAGCTTCCTTCATCACAGCCACCAAAAACATGAAGCAGCATTTTGAAGCTCTTCTTAAGGAGATGGTCGAAACTGGTTCCCGCCCAATTTGTGTATTCTCCGACTTCTTCCTCTATTGGACTCTCGACACATGTCGCACTTTTGGCATTCCTAGGGTTGTGTCTCATGGAATGGGGGTGTTACCCATGTTGATTCTCAAGCATAATTCCGACACATGCAAAACGTCGTCTGAGTTTGACGTTATAGAGTTACCGAGTTTGACACTTCCATTCACATTGAACGGGTCAGACCTGCCCGTTTGTGACCCTGATGACCCCTTTACCAGGGTCATATTAGAGGTTGAGGAAGCAGACAAGAACAGCTGGGGTGTGATTGTGAATAGCTTTCAAGAGCTTGAAGGTGAGTACGTGACCGCATTGGAAGGTTTGTACTACAAAGAGGCCAGGGCATGGTGCGTGGGGCCAGTTTTGCTCTACGATTATATTCAAGAGCAATCTAGAGCGTCCGATGGTAAGAGTCAATCCTGCGGTCCGTACATCGAGTGGCTGGATAAGCAAGAGGGATCCAGTGTGGTGATCTATGTGTCATTTGGTACACAAGCGCGATTGTCCAACGAACAGATGGACGAGATTTCTTATGGACTAGAGATGGCGGGGCAACGCTTCATTTGGGTTGTTGGATCATCAGGGATGTGGGTTCCAGATGAAGGATGGGTGAGAAGGGTGGAAGGGAGAGGGTTGGTTGTACGTGATTGGGTAGACCAGCGGAGTATCCTAGCGCACCCGAAGGTGGGCGGGTTTGTGAGTCATTGTGGGTGGAACTCGGTGTTGGAGAGCTTGTCAATGGGGGTGCCACTATTAGCTTGGCCAATCGAAGCGGAGCAACCATTGAACGCCAAGTTCGTTGCAATGGGGCTCAAAGCAGGGCTGATGGTTTCAGAAGAGAGGGTCAAGACTATTGATAGGCATGTGATACGTGATGGAGTGAAGGAGTTGATGGAAGGTAAGAAAGGGAGGAGTGCTAGGGAAAGGGCAAGAGAATTGGGGACAATGGCTTGGAATGCTGTCAAGAAAGGTGGTTCGTCTGATGGAAAATTGGATGAATTGATCGATCGACTCATTGACATCAAGAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

52.45

Weight (kDa)

5.36

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 250 8.8e-10 Glycosyltransferase, N-terminal domain
UDPGT PF00201 280 - 428 2.4e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 1132
AccB7I CCANNNNNTGG 1 cut(s) 732
AccI GTMKAC 1 cut(s) 1041
AccII CGCG 1 cut(s) 886
AciI CCGC 8 cut(s) 252, 364, 696, 810, 935, 1048, 1077, 1160
AclWI GGATC 3 cut(s) 840, 853, 970
AcoI YGGCCR 1 cut(s) 1148
AfaI GTAC 5 cut(s) 689, 713, 818, 877, 1029
AfiI CCNNNNNNNGG 6 cut(s) 46, 606, 732, 989, 1072, 1073
AflII CTTAAG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 6 cut(s) 329, 562, 671, 680, 770, 1174
AjnI CCWGG 2 cut(s) 605, 725
AjuI GAANNNNNNNTTGG 2 cut(s) 1094, 1126
AluBI AGCT 7 cut(s) 287, 332, 645, 666, 676, 1119, 1145
AluI AGCT 7 cut(s) 287, 332, 645, 666, 676, 1119, 1145
Alw26I GTCTC 2 cut(s) 166, 450
AlwI GGATC 3 cut(s) 840, 853, 970
AoxI GGCC 4 cut(s) 103, 723, 743, 1148
ApeKI GCWGC 2 cut(s) 5, 319
Asp700I GAANNNNTTC 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 434
AspLEI GCGC 2 cut(s) 886, 1063
AspS9I GGNCC 2 cut(s) 743, 812
AsuHPI GGTGA 4 cut(s) 9, 695, 868, 1009
AvaII GGWCC 1 cut(s) 812
AvrII CCTAGG 1 cut(s) 434
BalI TGGCCA 1 cut(s) 1150
BamHI GGATCC 1 cut(s) 845
BanI GGYRCC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 1200
BbvI GCAGC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 607, 727
BciVI GTATCC 1 cut(s) 1064
BcoDI GTCTC 2 cut(s) 166, 450
BfaI CTAG 7 cut(s) 74, 275, 435, 780, 926, 1058, 1305
BfrI CTTAAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 582
BfuI GTATCC 1 cut(s) 1064
BisI GCNGC 2 cut(s) 6, 320
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 2 cut(s) 7, 321
Bme1390I CCNGG 2 cut(s) 607, 727
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 2 cut(s) 743, 812
BmiI GGNNCC 5 cut(s) 361, 744, 847, 981, 1134
BmrFI CCNGG 2 cut(s) 607, 727
BoxI GACNNNNGTC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 36, 464
Bsa29I ATCGAT 1 cut(s) 1392
BsaAI YACGTR 3 cut(s) 691, 1031, 1259
BsaJI CCNNGG 5 cut(s) 84, 100, 434, 606, 726
BsaXI ACNNNNNCTCC 2 cut(s) 1106, 1136
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 606, 732, 989, 1072, 1073
Bse1I ACTGG 3 cut(s) 361, 746, 849
Bse3DI GCAATG 2 cut(s) 68, 1197
BseBI CCWGG 2 cut(s) 607, 727
BseCI ATCGAT 1 cut(s) 1392
BseDI CCNNGG 5 cut(s) 84, 100, 434, 606, 726
BseGI GGATG 6 cut(s) 11, 147, 204, 978, 998, 1387
BseLI CCNNNNNNNGG 6 cut(s) 46, 606, 732, 989, 1072, 1073
BseMI GCAATG 2 cut(s) 68, 1197
BseMII CTCAG 3 cut(s) 177, 207, 504
BseNI ACTGG 3 cut(s) 361, 746, 849
BseRI GAGGAG 1 cut(s) 1312
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 886
Bsh1285I CGRYCG 1 cut(s) 1396
BshFI GGCC 4 cut(s) 105, 725, 745, 1150
BshNI GGYRCC 1 cut(s) 1132
BshVI ATCGAT 1 cut(s) 1392
BsiEI CGRYCG 1 cut(s) 1396
BslFI GGGAC 1 cut(s) 1342
BslI CCNNNNNNNGG 6 cut(s) 46, 606, 732, 989, 1072, 1073
BsmAI GTCTC 2 cut(s) 166, 450
BsmFI GGGAC 1 cut(s) 1342
BsmI GAATGC 2 cut(s) 429, 1348
BsnI GGCC 4 cut(s) 105, 725, 745, 1150
Bsp1286I GDGCHC 1 cut(s) 1200
Bsp143I GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
BspACI CCGC 8 cut(s) 252, 364, 696, 810, 935, 1048, 1077, 1160
BspANI GGCC 4 cut(s) 105, 725, 745, 1150
BspCNI CTCAG 3 cut(s) 176, 206, 505
BspDI ATCGAT 1 cut(s) 1392
BspFNI CGCG 1 cut(s) 886
BspLI GGNNCC 5 cut(s) 361, 744, 847, 981, 1134
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 3 cut(s) 840, 853, 970
BspQI GCTCTTC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 1132
BspTI CTTAAG 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 68, 1197
BsrI ACTGG 3 cut(s) 361, 746, 849
BssECI CCNNGG 5 cut(s) 84, 100, 434, 606, 726
BssMI GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
BssT1I CCWWGG 2 cut(s) 84, 434
Bst2UI CCWGG 2 cut(s) 607, 727
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 3 cut(s) 69, 339, 1218
BstAFI CTTAAG 1 cut(s) 338
BstBAI YACGTR 3 cut(s) 691, 1031, 1259
BstDEI CTNAG 4 cut(s) 163, 193, 199, 513
BstDSI CCRYGG 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 604
BstF5I GGATG 6 cut(s) 11, 147, 204, 978, 998, 1387
BstFNI CGCG 1 cut(s) 886
BstHHI GCGC 2 cut(s) 886, 1063
BstKTI GATC 6 cut(s) 183, 848, 861, 965, 1392, 1396
BstMAI GTCTC 2 cut(s) 166, 450
BstMBI GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
BstMCI CGRYCG 1 cut(s) 1396
BstMWI GCNNNNNNNGC 4 cut(s) 426, 751, 835, 1343
BstNI CCWGG 2 cut(s) 607, 727
BstNSI RCATGY 3 cut(s) 417, 501, 1253
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 605, 725
BstUI CGCG 1 cut(s) 886
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
Bsu15I ATCGAT 1 cut(s) 1392
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 4 cut(s) 105, 725, 745, 1150
BsuTUI ATCGAT 1 cut(s) 1392
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 6 cut(s) 11, 147, 204, 978, 998, 1387
BtsIMutI CAGTG 1 cut(s) 856
BveI ACCTGC 1 cut(s) 582
CfoI GCGC 2 cut(s) 886, 1063
Cfr13I GGNCC 2 cut(s) 743, 812
ClaI ATCGAT 1 cut(s) 1392
CpoI CGGWCCG 1 cut(s) 812
CseI GACGC 1 cut(s) 774
Csp6I GTAC 5 cut(s) 688, 712, 817, 876, 1028
CspCI CAANNNNNGTGG 2 cut(s) 1339, 1374
CspI CGGWCCG 1 cut(s) 812
CviAII CATG 9 cut(s) 26, 46, 313, 414, 449, 469, 498, 732, 1250
CviQI GTAC 5 cut(s) 688, 712, 817, 876, 1028
DdeI CTNAG 4 cut(s) 163, 193, 199, 513
DpnI GATC 6 cut(s) 182, 847, 860, 964, 1391, 1395
DpnII GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
EaeI YGGCCR 1 cut(s) 1148
Eam1104I CTCTTC 3 cut(s) 69, 339, 1218
EarI CTCTTC 3 cut(s) 69, 339, 1218
Eco130I CCWWGG 2 cut(s) 84, 434
Eco24I GRGCYC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 812
EcoNI CCTNNNNNAGG 1 cut(s) 604
EcoRII CCWGG 2 cut(s) 605, 725
EcoT14I CCWWGG 2 cut(s) 84, 434
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 2 cut(s) 84, 434
FaeI CATG 9 cut(s) 29, 49, 316, 417, 452, 472, 501, 735, 1253
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 1342
FatI CATG 9 cut(s) 25, 45, 312, 413, 448, 468, 497, 731, 1249
FauI CCCGC 3 cut(s) 371, 928, 1070
FblI GTMKAC 1 cut(s) 1041
Fnu4HI GCNGC 2 cut(s) 6, 320
FokI GGATG 5 cut(s) 134, 191, 985, 1005, 1394
FriOI GRGCYC 1 cut(s) 1200
Fsp4HI GCNGC 2 cut(s) 6, 320
FspBI CTAG 7 cut(s) 74, 275, 435, 780, 926, 1058, 1305
GlaI GCGC 2 cut(s) 885, 1062
GluI GCNGC 2 cut(s) 6, 320
GsaI CCCAGC 1 cut(s) 649
HaeIII GGCC 4 cut(s) 105, 725, 745, 1150
HgaI GACGC 1 cut(s) 774
HhaI GCGC 2 cut(s) 886, 1063
Hin1II CATG 9 cut(s) 29, 49, 316, 417, 452, 472, 501, 735, 1253
Hin6I GCGC 2 cut(s) 884, 1061
HinP1I GCGC 2 cut(s) 884, 1061
HinfI GANTC 5 cut(s) 403, 475, 799, 1087, 1398
HphI GGTGA 4 cut(s) 9, 695, 868, 1009
Hpy166II GTNNAC 2 cut(s) 878, 1042
Hpy188I TCNGA 8 cut(s) 166, 385, 493, 514, 571, 790, 1222, 1369
Hpy8I GTNNAC 2 cut(s) 878, 1042
Hpy99I CGWCG 1 cut(s) 511
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 5 cut(s) 506, 522, 690, 1030, 1258
HpyCH4V TGCA 2 cut(s) 501, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 426, 751, 835, 1343
HpyF3I CTNAG 4 cut(s) 163, 193, 199, 513
HpySE526I ACGT 5 cut(s) 506, 522, 690, 1030, 1258
Hsp92II CATG 9 cut(s) 29, 49, 316, 417, 452, 472, 501, 735, 1253
HspAI GCGC 2 cut(s) 884, 1061
Kzo9I GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 1162
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 7 cut(s) 74, 275, 435, 780, 926, 1058, 1305
MaeII ACGT 5 cut(s) 506, 522, 690, 1030, 1258
MaeIII GTNAC 6 cut(s) 56, 112, 462, 531, 584, 691
MalI GATC 6 cut(s) 182, 847, 860, 964, 1391, 1395
MboI GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
MboII GAAGA 6 cut(s) 28, 56, 251, 326, 382, 1235
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 1 cut(s) 1200
MlsI TGGCCA 1 cut(s) 1150
MluCI AATT 6 cut(s) 216, 369, 487, 1322, 1376, 1385
MluNI TGGCCA 1 cut(s) 1150
MlyI GAGTC 4 cut(s) 397, 808, 1096, 1392
MmeI TCCRAC 5 cut(s) 408, 516, 918, 940, 1092
Mox20I TGGCCA 1 cut(s) 1150
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 1150
MseI TTAA 3 cut(s) 134, 339, 1420
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 1150
MspA1I CMGCKG 2 cut(s) 645, 1048
MspCI CTTAAG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 607, 727
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 2 cut(s) 429, 1348
MvaI CCWGG 2 cut(s) 607, 727
MvnI CGCG 1 cut(s) 886
MwoI GCNNNNNNNGC 4 cut(s) 426, 751, 835, 1343
NdeII GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
NlaIII CATG 9 cut(s) 29, 49, 316, 417, 452, 472, 501, 735, 1253
NlaIV GGNNCC 5 cut(s) 361, 744, 847, 981, 1134
NmuCI GTSAC 3 cut(s) 56, 584, 691
NspI RCATGY 3 cut(s) 417, 501, 1253
PciI ACATGT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 1182
PctI GAATGC 2 cut(s) 429, 1348
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 475
PflMI CCANNNNNTGG 1 cut(s) 732
PkrI GCNGC 2 cut(s) 7, 321
Ple19I CGATCG 1 cut(s) 1396
PleI GAGTC 4 cut(s) 397, 807, 1095, 1392
PpsI GAGTC 4 cut(s) 397, 807, 1095, 1392
Ppu21I YACGTR 3 cut(s) 691, 1031, 1259
PscI ACATGT 1 cut(s) 413
PshAI GACNNNNGTC 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 605, 725
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 2 cut(s) 605, 725
PspN4I GGNNCC 5 cut(s) 361, 744, 847, 981, 1134
PspPI GGNCC 2 cut(s) 743, 812
PsuI RGATCY 1 cut(s) 845
PvuI CGATCG 1 cut(s) 1396
PvuII CAGCTG 1 cut(s) 645
RsaI GTAC 5 cut(s) 689, 713, 818, 877, 1029
RsaNI GTAC 5 cut(s) 688, 712, 817, 876, 1028
RseI CAYNNNNRTG 1 cut(s) 176
Rsr2I CGGWCCG 1 cut(s) 812
RsrII CGGWCCG 1 cut(s) 812
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 3 cut(s) 134, 339, 1420
SatI GCNGC 2 cut(s) 6, 320
Sau3AI GATC 6 cut(s) 180, 845, 858, 962, 1389, 1393
Sau96I GGNCC 2 cut(s) 743, 812
SchI GAGTC 4 cut(s) 397, 808, 1096, 1392
ScrFI CCNGG 2 cut(s) 607, 727
SduI GDGCHC 1 cut(s) 1200
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 3 cut(s) 51, 338, 479
SmoI CTYRAG 3 cut(s) 51, 338, 479
Sse9I AATT 6 cut(s) 216, 369, 487, 1322, 1376, 1385
SsiI CCGC 8 cut(s) 252, 364, 696, 810, 935, 1048, 1077, 1160
SspMI CTAG 7 cut(s) 74, 275, 435, 780, 926, 1058, 1305
StyD4I CCNGG 2 cut(s) 605, 725
StyI CCWWGG 2 cut(s) 84, 434
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 5 cut(s) 509, 525, 693, 1033, 1261
TaqI TCGA 6 cut(s) 351, 408, 822, 1155, 1392, 1396
TasI AATT 6 cut(s) 216, 369, 487, 1322, 1376, 1385
TatI WGTACW 1 cut(s) 711
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 3 cut(s) 134, 339, 1420
Tru9I TTAA 3 cut(s) 134, 339, 1420
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 3 cut(s) 56, 584, 691
TseI GCWGC 2 cut(s) 5, 319
Tsp45I GTSAC 3 cut(s) 56, 584, 691
TspDTI ATGAA 7 cut(s) 34, 136, 283, 329, 937, 1002, 1398
TspGWI ACGGA 2 cut(s) 89, 804
TspRI CASTG 1 cut(s) 856
Van91I CCANNNNNTGG 1 cut(s) 732
Vha464I CTTAAG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 604
XbaI TCTAGA 1 cut(s) 779
XceI RCATGY 3 cut(s) 417, 501, 1253
XcmI CCANNNNNNNNNTGG 3 cut(s) 901, 990, 1143
XmaJI CCTAGG 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 1041
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 7 cut(s) 74, 275, 435, 780, 926, 1058, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.