Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015713

Physical Location & Seq

Genomic Coordinates Reverse (-)

27220542 .. 27221696

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTGCTTCATCCTCACCTCCCCATGTAGTAATCTTCCCATTCATGGCTCAAGGCCACACTCTTCCATTGCTAGACATATCCAAGGCATTATCATTCCGTGGCCTCAAAGTAACCATCATCACCACCCCATTAAACGCACCGTTCATCCACTCCAAAGTCTCAGACCACATCTCATCAATCTCAGTCTCAGTCATCCCATTTCCAATTGTTCCAGACTTGCCACAAGGCTGTGAAAACACTGCTAATCTTCCTTCGGTTTCGCTAGACATATTAGCTTCCTTCATCACAGCCACCAAAAACATGAAGCAGCATTTTGAAGCTCTTCTTAAGGAGATGGTCGAAACTGGTTCCCGCCCAATTTGTGTAATCTCTGACTTCTTCCTCTATTGGACTCTCGACACATGTCGCTCTTTTAACATTCCTAGGGTTGTGTCTCATGGAATGGGGGTGTTACCCATGTTGATTCTCAAGCATAATTCCGACCCATGCAAAACGTCGTCTGAGTTTGACGTCATAGAGTTACCAAGTTTGACACTTCCATTCACATTGAACGGGTCAGACCTGCCCGTTTGTGACCCTGATGAGCCGTTTACCAGGGTCATATTAGCGGTTGAGGAAGCAGACAAGAACAGCTGGGGTGTGATTGTGAATAGCTTTCAAGAGCTTGAAGGTGAGTACGTGACCGCATTGGAAGGTTTGTACTACAAAGAGGCCAGGGCATGGTGTGTGGGGCCAGTTTTGCTCTACGATTATATTCAAGAGCAATCTAGAGCGTCCGATGGTAAGAGTCAATCCTGCGGTCCGTACATCGAGTGGCTAGATAAGCAAGAGGGATCCAGTGTGGTGATCTACGTGTCGTTTGGTACGCAAGCGCGATTGTCCAAGGAACAAATGGACGAGATTGCTTATGGACTAGAGATGGCGGGGCCACGCTTCATTTGGGTTGTCGGATCATCAGGGATGTGGGTTCCAGATGAAGGATGGGTGAGAAGGGTGGAAGGGAGAGGGTTGGTTGTACGTGATTGGGTAGACCAGCGGAGTGTCCTAGCGCATCCGAAGGCGGGCGGGTTTGTGAGTCATTGTGGGTGGAACTCAGTGTTGGGGAGCTTGTCAATGGGGGTGCCACCATTAGCTTGGCCAATCGGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

384

Amino Acids

42.22

Weight (kDa)

5.14

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 247	8.5e-11	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	277 - 382	1.1e-12	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015713)

Species	Orthologous Gene IDs
malus_domestica	MD17G1145300.v1.1
prunus_persica	Prupe.3G166800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0150071 RchiOBHm_Chr3g0481151 RchiOBHm_Chr3g0481171
rosa_laevigata	RLG00000020463 RLG00000023417
rosa_multiflora	Rmu_sc0001169.1_g000005 Rmu_sc0009445.1_g000012 Rmu_sc0009445.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097460
rosa_rugosa	Rorug02G0418300
rosa_samantha	Rh2AG477600 Rh2BG489900 Rh2CG463400
rosa_wichuraiana	Rw2G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	1123
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccI	GTMKAC	1 cut(s)	1032
AccII	CGCG	1 cut(s)	877
AciI	CCGC	8 cut(s)	355, 611, 687, 801, 926, 1039, 1064, 1068
AclWI	GGATC	3 cut(s)	831, 844, 961
AcoI	YGGCCR	1 cut(s)	1139
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	5 cut(s)	680, 704, 809, 868, 1020
AfiI	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	404, 855
AgsI	TTSAA	5 cut(s)	320, 553, 662, 671, 761
AjnI	CCWGG	2 cut(s)	596, 716
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AluBI	AGCT	7 cut(s)	278, 323, 636, 657, 667, 1110, 1136
AluI	AGCT	7 cut(s)	278, 323, 636, 657, 667, 1110, 1136
Alw26I	GTCTC	3 cut(s)	166, 193, 441
AlwI	GGATC	3 cut(s)	831, 844, 961
AoxI	GGCC	6 cut(s)	55, 103, 714, 734, 929, 1139
ApeKI	GCWGC	2 cut(s)	5, 310
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	877, 1054
AspS9I	GGNCC	3 cut(s)	734, 803, 929
AsuHPI	GGTGA	5 cut(s)	9, 115, 686, 859, 1000
AvaII	GGWCC	1 cut(s)	803
AvrII	CCTAGG	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	1141
BamHI	GGATCC	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	1123
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	5 cut(s)	125, 331, 776, 916, 978
BceAI	ACGGC	1 cut(s)	574
BciT130I	CCWGG	2 cut(s)	598, 718
BcoDI	GTCTC	3 cut(s)	166, 193, 441
BfaI	CTAG	7 cut(s)	74, 266, 426, 771, 821, 917, 1049
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	573
BisI	GCNGC	2 cut(s)	6, 311
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	7, 312
Bme1390I	CCNGG	2 cut(s)	598, 718
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	3 cut(s)	734, 803, 929
BmiI	GGNNCC	6 cut(s)	352, 735, 838, 930, 972, 1125
BmrFI	CCNGG	2 cut(s)	598, 718
BmsI	GCATC	1 cut(s)	1063
BoxI	GACNNNNGTC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	36, 455
BsaAI	YACGTR	3 cut(s)	682, 856, 1022
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	6 cut(s)	84, 100, 425, 597, 717, 885
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
Bse1I	ACTGG	3 cut(s)	352, 737, 840
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	598, 718
BseDI	CCNNGG	6 cut(s)	84, 100, 425, 597, 717, 885
BseGI	GGATG	6 cut(s)	11, 147, 195, 969, 989, 1054
BseLI	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	5 cut(s)	177, 198, 204, 495, 1110
BseNI	ACTGG	3 cut(s)	352, 737, 840
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	877
BshFI	GGCC	6 cut(s)	57, 105, 716, 736, 931, 1141
BshNI	GGYRCC	1 cut(s)	1123
BslI	CCNNNNNNNGG	4 cut(s)	46, 723, 980, 1064
BsmAI	GTCTC	3 cut(s)	166, 193, 441
BsnI	GGCC	6 cut(s)	57, 105, 716, 736, 931, 1141
Bsp143I	GATC	3 cut(s)	836, 849, 953
BspACI	CCGC	8 cut(s)	355, 611, 687, 801, 926, 1039, 1064, 1068
BspANI	GGCC	6 cut(s)	57, 105, 716, 736, 931, 1141
BspCNI	CTCAG	5 cut(s)	176, 197, 203, 496, 1109
BspFNI	CGCG	1 cut(s)	877
BspLI	GGNNCC	6 cut(s)	352, 735, 838, 930, 972, 1125
BspMI	ACCTGC	1 cut(s)	573
BspPI	GGATC	3 cut(s)	831, 844, 961
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	1123
BspTI	CTTAAG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	3 cut(s)	352, 737, 840
BssECI	CCNNGG	6 cut(s)	84, 100, 425, 597, 717, 885
BssMI	GATC	3 cut(s)	836, 849, 953
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	3 cut(s)	84, 425, 885
Bst2UI	CCWGG	2 cut(s)	598, 718
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	69, 330
BstACI	GRCGYC	1 cut(s)	513
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	3 cut(s)	682, 856, 1022
BstC8I	GCNNGC	2 cut(s)	873, 1066
BstDEI	CTNAG	5 cut(s)	163, 184, 190, 504, 1096
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	6 cut(s)	11, 147, 195, 969, 989, 1054
BstFNI	CGCG	1 cut(s)	877
BstHHI	GCGC	2 cut(s)	877, 1054
BstKTI	GATC	3 cut(s)	839, 852, 956
BstMAI	GTCTC	3 cut(s)	166, 193, 441
BstMBI	GATC	3 cut(s)	836, 849, 953
BstMWI	GCNNNNNNNGC	2 cut(s)	742, 826
BstNI	CCWGG	2 cut(s)	598, 718
BstNSI	RCATGY	1 cut(s)	408
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	596, 716
BstUI	CGCG	1 cut(s)	877
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	836
BstXI	CCANNNNNNTGG	1 cut(s)	1137
BstYI	RGATCY	1 cut(s)	836
BsuRI	GGCC	6 cut(s)	57, 105, 716, 736, 931, 1141
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	6 cut(s)	11, 147, 195, 969, 989, 1054
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	240, 847, 1104
BveI	ACCTGC	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	873, 1066
CfoI	GCGC	2 cut(s)	877, 1054
Cfr13I	GGNCC	3 cut(s)	734, 803, 929
CpoI	CGGWCCG	1 cut(s)	803
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	5 cut(s)	679, 703, 808, 867, 1019
CspI	CGGWCCG	1 cut(s)	803
CviAII	CATG	8 cut(s)	26, 46, 304, 405, 440, 460, 489, 723
CviQI	GTAC	5 cut(s)	679, 703, 808, 867, 1019
DdeI	CTNAG	5 cut(s)	163, 184, 190, 504, 1096
DpnI	GATC	3 cut(s)	838, 851, 955
DpnII	GATC	3 cut(s)	836, 849, 953
EaeI	YGGCCR	1 cut(s)	1139
Eam1104I	CTCTTC	2 cut(s)	69, 330
EarI	CTCTTC	2 cut(s)	69, 330
Eco130I	CCWWGG	3 cut(s)	84, 425, 885
Eco47I	GGWCC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	596, 716
EcoT14I	CCWWGG	3 cut(s)	84, 425, 885
ErhI	CCWWGG	3 cut(s)	84, 425, 885
FaeI	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	8 cut(s)	25, 45, 303, 404, 439, 459, 488, 722
FauI	CCCGC	4 cut(s)	362, 919, 1057, 1061
FblI	GTMKAC	1 cut(s)	1032
Fnu4HI	GCNGC	2 cut(s)	6, 311
FokI	GGATG	5 cut(s)	134, 182, 976, 996, 1041
Fsp4HI	GCNGC	2 cut(s)	6, 311
FspBI	CTAG	7 cut(s)	74, 266, 426, 771, 821, 917, 1049
GlaI	GCGC	2 cut(s)	876, 1053
GluI	GCNGC	2 cut(s)	6, 311
GsaI	CCCAGC	1 cut(s)	640
HaeIII	GGCC	6 cut(s)	57, 105, 716, 736, 931, 1141
HgaI	GACGC	1 cut(s)	765
HhaI	GCGC	2 cut(s)	877, 1054
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
Hin6I	GCGC	2 cut(s)	875, 1052
HinP1I	GCGC	2 cut(s)	875, 1052
HinfI	GANTC	4 cut(s)	394, 466, 790, 1078
HphI	GGTGA	5 cut(s)	9, 115, 686, 859, 1000
Hpy166II	GTNNAC	2 cut(s)	594, 1033
Hpy188I	TCNGA	9 cut(s)	166, 376, 484, 505, 562, 781, 953, 1059, 1148
Hpy188III	TCNNGA	6 cut(s)	215, 398, 662, 761, 771, 974
Hpy8I	GTNNAC	2 cut(s)	594, 1033
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	8 cut(s)	264, 292, 665, 689, 974, 987, 995, 1054
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	5 cut(s)	497, 513, 681, 855, 1021
HpyCH4V	TGCA	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	742, 826
HpyF3I	CTNAG	5 cut(s)	163, 184, 190, 504, 1096
HpySE526I	ACGT	5 cut(s)	497, 513, 681, 855, 1021
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
HspAI	GCGC	2 cut(s)	875, 1052
Kzo9I	GATC	3 cut(s)	836, 849, 953
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	1107, 1148
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	1063
MaeI	CTAG	7 cut(s)	74, 266, 426, 771, 821, 917, 1049
MaeII	ACGT	5 cut(s)	497, 513, 681, 855, 1021
MaeIII	GTNAC	5 cut(s)	112, 453, 522, 575, 682
MalI	GATC	3 cut(s)	838, 851, 955
MboI	GATC	3 cut(s)	836, 849, 953
MboII	GAAGA	5 cut(s)	28, 56, 242, 317, 373
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	836
MlsI	TGGCCA	1 cut(s)	1141
MluCI	AATT	3 cut(s)	207, 360, 478
MluNI	TGGCCA	1 cut(s)	1141
MlyI	GAGTC	3 cut(s)	388, 799, 1087
MmeI	TCCRAC	2 cut(s)	507, 931
MnlI	CCTC	8 cut(s)	25, 30, 116, 395, 610, 706, 826, 1001
Mox20I	TGGCCA	1 cut(s)	1141
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	1141
MseI	TTAA	3 cut(s)	134, 330, 417
Msp20I	TGGCCA	1 cut(s)	1141
MspA1I	CMGCKG	2 cut(s)	636, 1039
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	598, 718
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	598, 718
MvnI	CGCG	1 cut(s)	877
MwoI	GCNNNNNNNGC	2 cut(s)	742, 826
NdeII	GATC	3 cut(s)	836, 849, 953
NlaIII	CATG	8 cut(s)	29, 49, 307, 408, 443, 463, 492, 726
NlaIV	GGNNCC	6 cut(s)	352, 735, 838, 930, 972, 1125
NmuCI	GTSAC	2 cut(s)	575, 682
NspI	RCATGY	1 cut(s)	408
PciI	ACATGT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	723
PkrI	GCNGC	2 cut(s)	7, 312
PleI	GAGTC	3 cut(s)	388, 798, 1086
PpsI	GAGTC	3 cut(s)	388, 798, 1086
Ppu21I	YACGTR	3 cut(s)	682, 856, 1022
PscI	ACATGT	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	596, 716
PspFI	CCCAGC	1 cut(s)	636
PspGI	CCWGG	2 cut(s)	596, 716
PspN4I	GGNNCC	6 cut(s)	352, 735, 838, 930, 972, 1125
PspPI	GGNCC	3 cut(s)	734, 803, 929
PsuI	RGATCY	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	5 cut(s)	680, 704, 809, 868, 1020
RsaNI	GTAC	5 cut(s)	679, 703, 808, 867, 1019
Rsr2I	CGGWCCG	1 cut(s)	803
RsrII	CGGWCCG	1 cut(s)	803
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	134, 330, 417
SatI	GCNGC	2 cut(s)	6, 311
Sau3AI	GATC	3 cut(s)	836, 849, 953
Sau96I	GGNCC	3 cut(s)	734, 803, 929
SchI	GAGTC	3 cut(s)	388, 799, 1087
ScrFI	CCNGG	2 cut(s)	598, 718
SfaNI	GCATC	1 cut(s)	1063
SinI	GGWCC	1 cut(s)	803
SmlI	CTYRAG	3 cut(s)	51, 329, 470
SmoI	CTYRAG	3 cut(s)	51, 329, 470
Sse9I	AATT	3 cut(s)	207, 360, 478
SsiI	CCGC	8 cut(s)	355, 611, 687, 801, 926, 1039, 1064, 1068
SspMI	CTAG	7 cut(s)	74, 266, 426, 771, 821, 917, 1049
StyD4I	CCNGG	2 cut(s)	596, 716
StyI	CCWWGG	3 cut(s)	84, 425, 885
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	5 cut(s)	500, 516, 684, 858, 1024
TaqI	TCGA	3 cut(s)	342, 399, 813
TasI	AATT	3 cut(s)	207, 360, 478
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	3 cut(s)	134, 330, 417
Tru9I	TTAA	3 cut(s)	134, 330, 417
TscAI	CASTG	3 cut(s)	247, 847, 1104
TseFI	GTSAC	2 cut(s)	575, 682
TseI	GCWGC	2 cut(s)	5, 310
Tsp45I	GTSAC	2 cut(s)	575, 682
TspDTI	ATGAA	6 cut(s)	34, 136, 274, 320, 928, 993
TspGWI	ACGGA	2 cut(s)	89, 795
TspRI	CASTG	3 cut(s)	247, 847, 1104
Van91I	CCANNNNNTGG	1 cut(s)	723
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	803
XbaI	TCTAGA	1 cut(s)	770
XceI	RCATGY	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	4 cut(s)	892, 939, 981, 1134
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	1032
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	7 cut(s)	74, 266, 426, 771, 821, 917, 1049
ZraI	GACGTC	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.