RchiOBHm_Chr3g0483981

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018172
Physical Location & Seq
Forward (+)
30356223 .. 30356624
402 bp
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UTR
Exon/CDS
Intron
PRQ44871

Sequence Viewer

Length: 402 bp
ATGATTGGCCCCCAAAATCCACACCTCTTTATAGATCTATACTGGAACTCCACTAAATTTGGGGGCAAGTTAAATCATTATTTACTGGGCTTGAAACATTTGAGTTACTTAGACTTAAGCAACAGTAACTTCAAATGGATTCACATTCCAAACTTCATTGTGCAGAGTTTGAGGTATCTCAATTTCTCATGTTCCAACTTTGCAGAAGAGATTCCCTCTTCTCTTGGTAACCTCTCAAACTTGAACTATTTGGACCTCGATTCTCGTTATATTAATGATCTTTCTTCCAAAAACTTGAATTGGTTTTTTCATCTCTCTTCCCTCAAATATCTTAATCTCGAAGGTGTGAACCTTAACAGTACAGGAGTAAGTTGGCTACATGCTGTTAACATGCTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

133

Amino Acids

15.35

Weight (kDa)

7.01

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 33 - 118 4.2e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 361
AflII CTTAAG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 94, 133, 244, 298
AoxI GGCC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 56
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 8, 253
AvaII GGWCC 1 cut(s) 253
BfrI CTTAAG 1 cut(s) 115
BglII AGATCT 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 8, 253
BmiI GGNNCC 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bse1I ACTGG 2 cut(s) 47, 90
BseNI ACTGG 2 cut(s) 47, 90
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 9
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 34, 277
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 115
BsrI ACTGG 2 cut(s) 47, 90
BssMI GATC 2 cut(s) 34, 277
Bst4CI ACNGT 2 cut(s) 125, 359
Bst6I CTCTTC 3 cut(s) 201, 223, 322
BstAFI CTTAAG 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 227
BstKTI GATC 2 cut(s) 37, 280
BstMBI GATC 2 cut(s) 34, 277
BstNSI RCATGY 2 cut(s) 383, 394
BstPI GGTNACC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 8, 253
Csp6I GTAC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 3 cut(s) 189, 380, 391
CviJI RGCY 3 cut(s) 9, 90, 376
CviKI_1 RGCY 3 cut(s) 9, 90, 376
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 36, 279
DpnII GATC 2 cut(s) 34, 277
Eam1104I CTCTTC 3 cut(s) 201, 223, 322
EarI CTCTTC 3 cut(s) 201, 223, 322
Eco47I GGWCC 1 cut(s) 253
Eco91I GGTNACC 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 227
FaeI CATG 3 cut(s) 192, 383, 394
FaiI YATR 6 cut(s) 32, 40, 190, 270, 381, 392
FatI CATG 3 cut(s) 188, 379, 390
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 3 cut(s) 192, 383, 394
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 3 cut(s) 139, 211, 260
HpaI GTTAAC 1 cut(s) 388
Hpy166II GTNNAC 2 cut(s) 349, 388
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 349, 388
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 125, 359
HpyCH4V TGCA 2 cut(s) 163, 203
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 3 cut(s) 192, 383, 394
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 34, 277
LpnPI CCDG 3 cut(s) 28, 71, 348
MaeIII GTNAC 3 cut(s) 104, 125, 227
MalI GATC 2 cut(s) 36, 279
MboI GATC 2 cut(s) 34, 277
MboII GAAGA 4 cut(s) 210, 218, 276, 309
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 56, 181, 298
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 6 cut(s) 35, 165, 226, 242, 266, 332
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 7 cut(s) 71, 116, 273, 333, 354, 387, 400
MspCI CTTAAG 1 cut(s) 115
NdeII GATC 2 cut(s) 34, 277
NlaIII CATG 3 cut(s) 192, 383, 394
NlaIV GGNNCC 1 cut(s) 10
NspI RCATGY 2 cut(s) 383, 394
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 139, 211, 260
PshBI ATTAAT 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 8, 253
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 7 cut(s) 71, 116, 273, 333, 354, 387, 400
Sau3AI GATC 2 cut(s) 34, 277
Sau96I GGNCC 2 cut(s) 8, 253
SetI ASST 6 cut(s) 27, 176, 234, 258, 346, 354
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 3 cut(s) 56, 181, 298
TaaI ACNGT 2 cut(s) 125, 359
TaqI TCGA 2 cut(s) 258, 339
TasI AATT 3 cut(s) 56, 181, 298
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 3 cut(s) 139, 211, 260
Tru1I TTAA 7 cut(s) 71, 116, 273, 333, 354, 387, 400
Tru9I TTAA 7 cut(s) 71, 116, 273, 333, 354, 387, 400
TspDTI ATGAA 2 cut(s) 145, 299
Vha464I CTTAAG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 383, 394
XmnI GAANNNNTTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.