Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018172

Physical Location & Seq

Genomic Coordinates Reverse (-)

60245856 .. 60249752

Gene Structure 3897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG385500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATGTACAACAATTTGTTGAGGATTTGCCTACATGCAGTAATAGTAGCTTAGAAGTGCTAGATTTCATGTCAAGTAATCTCCATGGATCACTGCCTGAATCTTTGGGATCCCTTAAATATTTGGAAAGTGAACTCATTCTCGGGTCCTCTCCCAGCCACAATAGGAAATCTGTCACATTTGCAGGTCCTGGACCTGGCCTTCAACAACATGATGAATGGCACCATCCCAGAAAGTATCGGACAACTTTCAGAGTTGAGAGCATTGCTACTCTGGGAGTCTGGGGTGGTTCATGGGAAGAGAGAGAGAGTGTGAATTATTCTGAGTACTATTTTAGATTTGCTGATCAAGTTTGGAGCTTTTTACAAGGGTTTGCCATCTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

129

Amino Acids

14.71

Weight (kDa)

5.08

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0483981 RchiOBHm_Chr4g0440621 RchiOBHm_Chr5g0022631
rosa_multiflora	Rmu_sc0001784.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056880 Rroxscaffold_5G00381440 Rroxscaffold_6G00397910
rosa_rugosa	Rorug01G0268600
rosa_samantha	Rh1AG250800 Rh1CG234600 Rh4DG385500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	222
AclWI	GGATC	3 cut(s)	97, 105, 118
AfaI	GTAC	2 cut(s)	9, 329
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	190, 196
AluBI	AGCT	2 cut(s)	51, 360
AluI	AGCT	2 cut(s)	51, 360
AlwI	GGATC	3 cut(s)	97, 105, 118
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	147, 188, 194
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	147, 188, 194
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	222
BccI	CCATC	2 cut(s)	234, 386
BciT130I	CCWGG	2 cut(s)	192, 198
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	176
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	192, 198
Bme18I	GGWCC	3 cut(s)	147, 188, 194
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	147, 188, 194
BmiI	GGNNCC	3 cut(s)	112, 148, 224
BmrFI	CCNGG	2 cut(s)	192, 198
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	192, 198
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	10, 226
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	89, 110, 346
Bsp19I	CCATGG	1 cut(s)	85
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	112, 148, 224
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	3 cut(s)	97, 105, 118
BspT107I	GGYRCC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	264
BsrGI	TGTACA	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	89, 110, 346
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	192, 198
Bst6I	CTCTTC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	52, 324
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	10, 226
BstKTI	GATC	3 cut(s)	92, 113, 349
BstMBI	GATC	3 cut(s)	89, 110, 346
BstNI	CCWGG	2 cut(s)	192, 198
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	190, 196
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	10, 226
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	147, 188, 194
Csp6I	GTAC	2 cut(s)	8, 328
CviAII	CATG	5 cut(s)	36, 70, 86, 212, 294
CviJI	RGCY	4 cut(s)	51, 159, 201, 360
CviKI_1	RGCY	4 cut(s)	51, 159, 201, 360
CviQI	GTAC	2 cut(s)	8, 328
DdeI	CTNAG	2 cut(s)	52, 324
DpnI	GATC	3 cut(s)	91, 112, 348
DpnII	GATC	3 cut(s)	89, 110, 346
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	147, 188, 194
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	147, 188
EcoRII	CCWGG	2 cut(s)	190, 196
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	5 cut(s)	39, 73, 89, 215, 297
FaiI	YATR	5 cut(s)	37, 71, 87, 213, 295
FatI	CATG	5 cut(s)	35, 69, 85, 211, 293
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	2 cut(s)	17, 213
FspBI	CTAG	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	39, 73, 89, 215, 297
HinfI	GANTC	2 cut(s)	101, 279
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	243, 254, 325
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	39, 185
HpyF3I	CTNAG	2 cut(s)	52, 324
Hsp92II	CATG	5 cut(s)	39, 73, 89, 215, 297
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	89, 110, 346
LmnI	GCTCC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	91, 112, 348
MboI	GATC	3 cut(s)	89, 110, 346
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	2 cut(s)	14, 316
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	2 cut(s)	16, 160
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	192, 198
MvaI	CCWGG	2 cut(s)	192, 198
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	89, 110, 346
NlaIII	CATG	5 cut(s)	39, 73, 89, 215, 297
NlaIV	GGNNCC	3 cut(s)	112, 148, 224
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	190
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PpuMI	RGGWCCY	2 cut(s)	147, 188
Psp5II	RGGWCCY	2 cut(s)	147, 188
Psp6I	CCWGG	2 cut(s)	190, 196
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	190, 196
PspN4I	GGNNCC	3 cut(s)	112, 148, 224
PspPI	GGNCC	3 cut(s)	147, 188, 194
PspPPI	RGGWCCY	2 cut(s)	147, 188
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	9, 329
RsaNI	GTAC	2 cut(s)	8, 328
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	89, 110, 346
Sau96I	GGNCC	3 cut(s)	147, 188, 194
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	192, 198
SetI	ASST	4 cut(s)	53, 190, 199, 362
SinI	GGWCC	3 cut(s)	147, 188, 194
Sse9I	AATT	2 cut(s)	14, 316
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	190, 196
StyI	CCWWGG	1 cut(s)	85
TasI	AATT	2 cut(s)	14, 316
TatI	WGTACW	2 cut(s)	7, 327
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	58, 231, 282
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	3 cut(s)	147, 188, 194
XceI	RCATGY	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.