Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001784.1

Orthogroup ID

OG0018172

Physical Location & Seq

Genomic Coordinates Forward (+)

9191 .. 14720

Gene Structure 5530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001784.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgggatacgatgcagtagtgactcacgcaaacatcaatctctcatattcctactttgtaggagaggttccttcctctgtcggtaacctctcaaacttgaactatcttgacctcagttttgattattacaattttgtttcttccaaaaacttgaattggctttctcatctctcttccctaaaatatctcaatcttggaggtgtggaccttagcagcacaggagtaagttggctacatgatgccaacatgcttccttcactcatagagttgcatttgtctggttgccaacttgatggaaaccaacttccactctccctgcccacaattaacttcacatcgcttttgagagagaagtcatcctccaccttgctgtgctccggtgaccagtggccggctgcggtctccggcgaccagtctccgaaatcgggtggaggagaagttggagaggacgtggtcggcgtcgaacttgacgatgttgaggacctgggaggatttctggagattggagatgtcgcggatcttggcgctgacgtggtcgcaggtggagcagacgttggagaggacgtagtcggcgtcgaacttgatgatgtcgaggacctgggaggatgtctagagattggagaggtgcttgtcgaggtcggagccctgggagagaggaggtggtcgaggttgagatccagggcgagccgtggactgcagcggaggaggaccagcgccggtggcgaatcgaaaccttctctctgcctcacagacctctatccaatcacaatcttctctctacgactctaccacagcttccaagccatccccagagagttcaccggaaaccaaatctcggccaaagacagagcccaggtcgaatctccgccgtcgtcttcgctcagccgccaccggaaaatagcccgaagcccaccagtcgaatccccgccgttgtcttcacttccatactattgttcatctctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

321

Amino Acids

34.47

Weight (kDa)

4.63

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0483981 RchiOBHm_Chr4g0440621 RchiOBHm_Chr5g0022631
rosa_multiflora	Rmu_sc0001784.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056880 Rroxscaffold_5G00381440 Rroxscaffold_6G00397910
rosa_rugosa	Rorug01G0268600
rosa_samantha	Rh1AG250800 Rh1CG234600 Rh4DG385500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AccII	CGCG	1 cut(s)	515
AciI	CCGC	6 cut(s)	398, 515, 700, 866, 886, 926
AclWI	GGATC	2 cut(s)	525, 669
AcoI	YGGCCR	2 cut(s)	389, 837
AcyI	GRCGYC	2 cut(s)	459, 573
AfiI	CCNNNNNNNGG	3 cut(s)	391, 425, 835
AgsI	TTSAA	2 cut(s)	100, 154
AjiI	CACGTC	2 cut(s)	451, 532
AjnI	CCWGG	5 cut(s)	483, 597, 645, 677, 852
AluBI	AGCT	1 cut(s)	795
AluI	AGCT	1 cut(s)	795
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	406, 420
AlwI	GGATC	2 cut(s)	525, 669
AoxI	GGCC	2 cut(s)	389, 837
ApeKI	GCWGC	3 cut(s)	213, 395, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	2 cut(s)	527, 716
AspS9I	GGNCC	4 cut(s)	205, 481, 595, 708
AsuHPI	GGTGA	2 cut(s)	392, 811
AvaII	GGWCC	4 cut(s)	205, 481, 595, 708
BanII	GRGCYC	2 cut(s)	646, 853
BbsI	GAAGAC	2 cut(s)	867, 927
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	225, 382, 709
BccI	CCATC	2 cut(s)	287, 812
BceAI	ACGGC	3 cut(s)	672, 853, 913
BciT130I	CCWGG	5 cut(s)	485, 599, 647, 679, 854
BcoDI	GTCTC	2 cut(s)	406, 420
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	695
BfoI	RGCGCY	2 cut(s)	528, 717
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	4 cut(s)	214, 396, 698, 886
BlpI	GCTNAGC	1 cut(s)	881
BlsI	GCNGC	4 cut(s)	215, 397, 699, 887
Bme1390I	CCNGG	5 cut(s)	485, 599, 647, 679, 854
Bme18I	GGWCC	4 cut(s)	205, 481, 595, 708
BmgBI	CACGTC	2 cut(s)	451, 532
BmgT120I	GGNCC	4 cut(s)	205, 481, 595, 708
BmiI	GGNNCC	2 cut(s)	69, 643
BmrFI	CCNGG	5 cut(s)	485, 599, 647, 679, 854
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	867, 927
BpmI	CTGGAG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	881
BsaHI	GRCGYC	2 cut(s)	459, 573
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	7 cut(s)	484, 598, 645, 646, 678, 688, 852
BsaWI	WCCGGW	3 cut(s)	377, 821, 891
BsaXI	ACNNNNNCTCC	8 cut(s)	423, 435, 453, 465, 537, 549, 567, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 425, 835
Bse118I	RCCGGY	2 cut(s)	391, 716
Bse1I	ACTGG	3 cut(s)	385, 412, 914
BseBI	CCWGG	5 cut(s)	485, 599, 647, 679, 854
BseDI	CCNNGG	7 cut(s)	484, 598, 645, 646, 678, 688, 852
BseGI	GGATG	3 cut(s)	356, 611, 804
BseLI	CCNNNNNNNGG	3 cut(s)	391, 425, 835
BseMII	CTCAG	2 cut(s)	127, 895
BseNI	ACTGG	3 cut(s)	385, 412, 914
BseRI	GAGGAG	3 cut(s)	447, 670, 718
BseXI	GCAGC	3 cut(s)	225, 382, 709
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	391, 839
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	6 cut(s)	378, 392, 405, 717, 822, 892
BslI	CCNNNNNNNGG	3 cut(s)	391, 425, 835
BsmAI	GTCTC	2 cut(s)	406, 420
BsnI	GGCC	2 cut(s)	391, 839
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	377, 646, 853
Bsp143I	GATC	2 cut(s)	517, 674
Bsp1720I	GCTNAGC	1 cut(s)	881
BspACI	CCGC	6 cut(s)	398, 515, 700, 866, 886, 926
BspANI	GGCC	2 cut(s)	391, 839
BspCNI	CTCAG	2 cut(s)	126, 894
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	69, 643
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	525, 669
BspTNI	GGTCTC	1 cut(s)	406
BsrFI	RCCGGY	2 cut(s)	391, 716
BsrI	ACTGG	3 cut(s)	385, 412, 914
BssAI	RCCGGY	2 cut(s)	391, 716
BssECI	CCNNGG	7 cut(s)	484, 598, 645, 646, 678, 688, 852
BssMI	GATC	2 cut(s)	517, 674
BssNI	GRCGYC	2 cut(s)	459, 573
Bst2UI	CCWGG	5 cut(s)	485, 599, 647, 679, 854
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	2 cut(s)	459, 573
BstC8I	GCNNGC	2 cut(s)	393, 685
BstDEI	CTNAG	3 cut(s)	113, 209, 881
BstDSI	CCRYGG	1 cut(s)	688
BstEII	GGTNACC	2 cut(s)	83, 380
BstF5I	GGATG	3 cut(s)	356, 611, 804
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	2 cut(s)	528, 717
BstHHI	GCGC	2 cut(s)	527, 716
BstKTI	GATC	2 cut(s)	520, 677
BstMAI	GTCTC	2 cut(s)	406, 420
BstMBI	GATC	2 cut(s)	517, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 720
BstNI	CCWGG	5 cut(s)	485, 599, 647, 679, 854
BstNSI	RCATGY	1 cut(s)	250
BstPI	GGTNACC	2 cut(s)	83, 380
BstSCI	CCNGG	5 cut(s)	483, 597, 645, 677, 852
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	3 cut(s)	225, 382, 709
BstV2I	GAAGAC	2 cut(s)	867, 927
BstX2I	RGATCY	2 cut(s)	517, 674
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	2 cut(s)	517, 674
BsuRI	GGCC	2 cut(s)	391, 839
BtgI	CCRYGG	1 cut(s)	688
BtgZI	GCGATG	1 cut(s)	321
BtrI	CACGTC	2 cut(s)	451, 532
BtsCI	GGATG	3 cut(s)	356, 611, 804
BtsIMutI	CAGTG	1 cut(s)	392
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	393, 685
CfoI	GCGC	2 cut(s)	527, 716
Cfr10I	RCCGGY	2 cut(s)	391, 716
Cfr13I	GGNCC	4 cut(s)	205, 481, 595, 708
CseI	GACGC	2 cut(s)	448, 562
CviAII	CATG	2 cut(s)	236, 247
DdeI	CTNAG	3 cut(s)	113, 209, 881
DpnI	GATC	2 cut(s)	519, 676
DpnII	GATC	2 cut(s)	517, 674
EaeI	YGGCCR	2 cut(s)	389, 837
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	855
Eco24I	GRGCYC	2 cut(s)	646, 853
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	4 cut(s)	205, 481, 595, 708
Eco91I	GGTNACC	2 cut(s)	83, 380
EcoO109I	RGGNCCY	2 cut(s)	481, 595
EcoO65I	GGTNACC	2 cut(s)	83, 380
EcoRII	CCWGG	5 cut(s)	483, 597, 645, 677, 852
EcoT38I	GRGCYC	2 cut(s)	646, 853
FaeI	CATG	2 cut(s)	239, 250
FaiI	YATR	5 cut(s)	46, 237, 248, 263, 946
FatI	CATG	2 cut(s)	235, 246
FauI	CCCGC	1 cut(s)	933
Fnu4HI	GCNGC	4 cut(s)	214, 396, 698, 886
FokI	GGATG	3 cut(s)	343, 618, 791
FriOI	GRGCYC	2 cut(s)	646, 853
Fsp4HI	GCNGC	4 cut(s)	214, 396, 698, 886
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	2 cut(s)	526, 715
GluI	GCNGC	4 cut(s)	214, 396, 698, 886
GsuI	CTGGAG	1 cut(s)	518
HaeII	RGCGCY	2 cut(s)	528, 717
HaeIII	GGCC	2 cut(s)	391, 839
HapII	CCGG	6 cut(s)	378, 392, 405, 717, 822, 892
HgaI	GACGC	2 cut(s)	448, 562
HhaI	GCGC	2 cut(s)	527, 716
Hin1I	GRCGYC	2 cut(s)	459, 573
Hin1II	CATG	2 cut(s)	239, 250
Hin6I	GCGC	2 cut(s)	525, 714
HinP1I	GCGC	2 cut(s)	525, 714
HinfI	GANTC	5 cut(s)	22, 725, 783, 860, 920
HpaII	CCGG	6 cut(s)	378, 392, 405, 717, 822, 892
HphI	GGTGA	2 cut(s)	392, 811
Hpy166II	GTNNAC	3 cut(s)	205, 692, 819
Hpy188I	TCNGA	2 cut(s)	420, 641
Hpy188III	TCNNGA	3 cut(s)	107, 497, 611
Hpy8I	GTNNAC	3 cut(s)	205, 692, 819
Hpy99I	CGWCG	3 cut(s)	464, 578, 874
HpyAV	CCTTC	3 cut(s)	81, 264, 744
HpyCH4IV	ACGT	4 cut(s)	450, 531, 552, 564
HpyCH4V	TGCA	3 cut(s)	14, 271, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 720
HpyF3I	CTNAG	3 cut(s)	113, 209, 881
HpySE526I	ACGT	4 cut(s)	450, 531, 552, 564
Hsp92I	GRCGYC	2 cut(s)	459, 573
Hsp92II	CATG	2 cut(s)	239, 250
HspAI	GCGC	2 cut(s)	525, 714
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	517, 674
LmnI	GCTCC	3 cut(s)	380, 545, 641
Lsp1109I	GCAGC	3 cut(s)	225, 382, 709
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	4 cut(s)	450, 531, 552, 564
MaeIII	GTNAC	3 cut(s)	19, 83, 380
MalI	GATC	2 cut(s)	519, 676
MboI	GATC	2 cut(s)	517, 674
MboII	GAAGA	5 cut(s)	132, 165, 763, 867, 927
MflI	RGATCY	2 cut(s)	517, 674
MhlI	GDGCHC	3 cut(s)	377, 646, 853
MluCI	AATT	3 cut(s)	130, 154, 324
MlyI	GAGTC	2 cut(s)	16, 777
MmeI	TCCRAC	3 cut(s)	421, 535, 619
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	700
MspI	CCGG	6 cut(s)	378, 392, 405, 717, 822, 892
MspR9I	CCNGG	5 cut(s)	485, 599, 647, 679, 854
MvaI	CCWGG	5 cut(s)	485, 599, 647, 679, 854
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	545, 720
NaeI	GCCGGC	1 cut(s)	393
NdeII	GATC	2 cut(s)	517, 674
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	239, 250
NlaIV	GGNNCC	2 cut(s)	69, 643
NmeAIII	GCCGAG	1 cut(s)	815
NmuCI	GTSAC	2 cut(s)	19, 380
NspI	RCATGY	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	530
PasI	CCCWGGG	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	3 cut(s)	456, 468, 570
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	725, 860, 920
PflFI	GACNNNGTC	3 cut(s)	452, 533, 566
PkrI	GCNGC	4 cut(s)	215, 397, 699, 887
PleI	GAGTC	2 cut(s)	16, 777
PpsI	GAGTC	2 cut(s)	16, 777
PpuMI	RGGWCCY	2 cut(s)	481, 595
Psp5II	RGGWCCY	2 cut(s)	481, 595
Psp6I	CCWGG	5 cut(s)	483, 597, 645, 677, 852
PspEI	GGTNACC	2 cut(s)	83, 380
PspGI	CCWGG	5 cut(s)	483, 597, 645, 677, 852
PspN4I	GGNNCC	2 cut(s)	69, 643
PspPI	GGNCC	4 cut(s)	205, 481, 595, 708
PspPPI	RGGWCCY	2 cut(s)	481, 595
PsrI	GAACNNNNNNTAC	2 cut(s)	51, 83
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	2 cut(s)	517, 674
PsyI	GACNNNGTC	3 cut(s)	452, 533, 566
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	214, 396, 698, 886
Sau3AI	GATC	2 cut(s)	517, 674
Sau96I	GGNCC	4 cut(s)	205, 481, 595, 708
SchI	GAGTC	2 cut(s)	16, 777
ScrFI	CCNGG	5 cut(s)	485, 599, 647, 679, 854
SduI	GDGCHC	3 cut(s)	377, 646, 853
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	695
SgrAI	CRCCGGYG	1 cut(s)	716
SinI	GGWCC	4 cut(s)	205, 481, 595, 708
Sse9I	AATT	3 cut(s)	130, 154, 324
SsiI	CCGC	6 cut(s)	398, 515, 700, 866, 886, 926
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	5 cut(s)	483, 597, 645, 677, 852
TaiI	ACGT	4 cut(s)	453, 534, 555, 567
TaqI	TCGA	8 cut(s)	462, 576, 591, 633, 665, 728, 858, 918
TasI	AATT	3 cut(s)	130, 154, 324
TauI	GCSGC	1 cut(s)	888
TfiI	GAWTC	3 cut(s)	725, 860, 920
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	2 cut(s)	19, 380
TseI	GCWGC	3 cut(s)	213, 395, 697
Tsp45I	GTSAC	2 cut(s)	19, 380
TspDTI	ATGAA	1 cut(s)	945
TspRI	CASTG	1 cut(s)	392
Tth111I	GACNNNGTC	3 cut(s)	452, 533, 566
VpaK11BI	GGWCC	4 cut(s)	205, 481, 595, 708
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.