Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018172

Physical Location & Seq

Genomic Coordinates Reverse (-)

38099234 .. 38099833

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTATAAGCGGAGTAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTGCAGCTGAAATGGTACGGCGAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTACTACTTCCGATGGAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGTGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

140

Amino Acids

15.91

Weight (kDa)

9.54

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	7.5e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0483981 RchiOBHm_Chr4g0440621 RchiOBHm_Chr5g0022631
rosa_multiflora	Rmu_sc0001784.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056880 Rroxscaffold_5G00381440 Rroxscaffold_6G00397910
rosa_rugosa	Rorug01G0268600
rosa_samantha	Rh1AG250800 Rh1CG234600 Rh4DG385500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	411
AciI	CCGC	2 cut(s)	82, 418
AclWI	GGATC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	130, 193, 373, 398
AluI	AGCT	4 cut(s)	130, 193, 373, 398
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	50, 190
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	256, 375
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	62, 202
BccI	CCATC	2 cut(s)	26, 323
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	3 cut(s)	102, 162, 188
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	3 cut(s)	51, 191, 418
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	3 cut(s)	52, 192, 419
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 416
BmrFI	CCNGG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	2 cut(s)	107, 389
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	62, 202
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 412
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 375
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	106, 180, 210, 308, 340
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	2 cut(s)	82, 418
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	6, 155, 416
BspMAI	CTGCAG	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	106, 180, 210, 308, 340
Bst4CI	ACNGT	2 cut(s)	163, 347
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	5 cut(s)	109, 183, 213, 311, 343
BstMBI	GATC	5 cut(s)	106, 180, 210, 308, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 384
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	3 cut(s)	102, 162, 188
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	62, 202
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	70, 293, 301
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	5 cut(s)	108, 182, 212, 310, 342
DpnII	GATC	5 cut(s)	106, 180, 210, 308, 340
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	256, 375
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT38I	GRGCYC	2 cut(s)	256, 375
FaeI	CATG	3 cut(s)	73, 296, 304
FaiI	YATR	4 cut(s)	71, 78, 294, 302
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	69, 292, 300
Fnu4HI	GCNGC	3 cut(s)	51, 191, 418
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 375
Fsp4HI	GCNGC	3 cut(s)	51, 191, 418
GluI	GCNGC	3 cut(s)	51, 191, 418
GsaI	CCCAGC	1 cut(s)	19
HapII	CCGG	2 cut(s)	54, 412
Hin1II	CATG	3 cut(s)	73, 296, 304
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 412
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	3 cut(s)	111, 286, 328
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 412
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyCH4III	ACNGT	2 cut(s)	163, 347
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	190, 304, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 384
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	73, 296, 304
Kpn2I	TCCGGA	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	106, 180, 210, 308, 340
LmnI	GCTCC	2 cut(s)	127, 414
LpnPI	CCDG	6 cut(s)	29, 67, 155, 297, 384, 397
Lsp1109I	GCAGC	2 cut(s)	62, 202
MaeII	ACGT	1 cut(s)	225
MalI	GATC	5 cut(s)	108, 182, 212, 310, 342
MboI	GATC	5 cut(s)	106, 180, 210, 308, 340
MboII	GAAGA	2 cut(s)	280, 283
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	3 cut(s)	256, 300, 375
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	22, 29, 131, 171, 326
MroI	TCCGGA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	193, 420
MspI	CCGG	2 cut(s)	54, 412
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	79, 384
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	106, 180, 210, 308, 340
NlaIII	CATG	3 cut(s)	73, 296, 304
NlaIV	GGNNCC	3 cut(s)	6, 155, 416
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	52, 192, 419
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 416
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	375
SatI	GCNGC	3 cut(s)	51, 191, 418
Sau3AI	GATC	5 cut(s)	106, 180, 210, 308, 340
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 375
SetI	ASST	9 cut(s)	92, 132, 155, 174, 195, 228, 337, 375, 400
SfcI	CTRYAG	3 cut(s)	102, 162, 188
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	122, 368
SmoI	CTYRAG	2 cut(s)	122, 368
SsiI	CCGC	2 cut(s)	82, 418
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	163, 347
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	117
TseI	GCWGC	2 cut(s)	50, 190
TspDTI	ATGAA	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.