Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018172

Physical Location & Seq

Genomic Coordinates Reverse (-)

49203757 .. 49204371

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG234600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGTCAGCTGATTGGCTTCCGGCTATCAGTAAGCTTCCTTCACTGCTAGAGTTGGACTTGACTTTTTCTCTTTTCATCACCTCCCACAGACTTCCATATCTAAATTTCGCATCACTCTTGGGCTTTAAACTCTCAGATAACTACTTGTCACAGTATGTCTCCAGTTCTAGACTTACTGGCTCCCTTCCTGAATGTGCATGGAAAAATAAACATTGCAGTTTGCAGACTCTAGACCTATCATATAATTCTGTAAGTATGGATGTACAACAATTTGTTGAGGCTTTGTCTACATGCAGTAATAGTAGCTTAGAAGTGCTAGATTTCATGTCAAGTAATCTCCATGGATCACTGCCTGAATCTTTGGGATCCCTTAAATATTTGGAAAGTCTTGGGTTCAGAAAGAACTCATTCTCGGGTCCTCTCCCAGCCACAATAGGAAATCTGTCACATTTGCAGGTCCTGGACTTGGCCTTCAACAACATGATGAATGGCACCATCCCAGAAAGTATCGGACAACTTTCAGAGTTGAGAGCATCGTTATTCTGGGAGTCTGGGGTGGTTCATGGGAAGGTGTTATATCTGAAATTCATCTTCCCAATCTCTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

204

Amino Acids

22.51

Weight (kDa)

5.67

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	99 - 178	1.4e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0483981 RchiOBHm_Chr4g0440621 RchiOBHm_Chr5g0022631
rosa_multiflora	Rmu_sc0001784.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056880 Rroxscaffold_5G00381440 Rroxscaffold_6G00397910
rosa_rugosa	Rorug01G0268600
rosa_samantha	Rh1AG250800 Rh1CG234600 Rh4DG385500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	290
AclWI	GGATC	3 cut(s)	355, 363, 376
AcsI	RAATTY	2 cut(s)	106, 587
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	11, 37, 309
AluI	AGCT	3 cut(s)	11, 37, 309
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	355, 363, 376
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	1 cut(s)	471
ApoI	RAATTY	2 cut(s)	106, 587
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	2 cut(s)	419, 460
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	419, 460
BamHI	GGATCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BccI	CCATC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	5 cut(s)	50, 171, 233, 320, 608
BfuAI	ACCTGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	2 cut(s)	419, 460
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	419, 460
BmiI	GGNNCC	4 cut(s)	184, 370, 420, 496
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	122, 545
BpmI	CTGGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	165, 184
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	268, 498
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	165, 184
BseYI	CCCAGC	1 cut(s)	427
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	494
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	347, 368
Bsp19I	CCATGG	1 cut(s)	343
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	184, 370, 420, 496
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	3 cut(s)	355, 363, 376
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	165, 184
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	347, 368
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	136, 310
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	268, 498
BstKTI	GATC	2 cut(s)	350, 371
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	347, 368
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	268, 498
BtsI	GCAGTG	2 cut(s)	44, 350
BtsIMutI	CAGTG	2 cut(s)	44, 350
BveI	ACCTGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	419, 460
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	6 cut(s)	201, 294, 328, 344, 484, 566
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	136, 310
DpnI	GATC	2 cut(s)	349, 370
DpnII	GATC	2 cut(s)	347, 368
DraI	TTTAAA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	419, 460
Eco88I	CYCGRG	1 cut(s)	415
EcoO109I	RGGNCCY	2 cut(s)	419, 460
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	6 cut(s)	204, 297, 331, 347, 487, 569
FatI	CATG	6 cut(s)	200, 293, 327, 343, 483, 565
FblI	GTMKAC	1 cut(s)	290
FokI	GGATG	2 cut(s)	275, 485
FspBI	CTAG	5 cut(s)	50, 171, 233, 320, 608
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	204, 297, 331, 347, 487, 569
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	229, 359, 551
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	5 cut(s)	139, 401, 515, 526, 585
Hpy188III	TCNNGA	3 cut(s)	171, 191, 233
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	4 cut(s)	51, 197, 484, 565
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	5 cut(s)	200, 219, 226, 297, 457
HpyF3I	CTNAG	2 cut(s)	136, 310
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	204, 297, 331, 347, 487, 569
Kzo9I	GATC	2 cut(s)	347, 368
LmnI	GCTCC	1 cut(s)	188
LweI	GCATC	2 cut(s)	122, 545
MaeI	CTAG	5 cut(s)	50, 171, 233, 320, 608
MaeIII	GTNAC	2 cut(s)	150, 447
MalI	GATC	2 cut(s)	349, 370
MboI	GATC	2 cut(s)	347, 368
MboII	GAAGA	1 cut(s)	586
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	4 cut(s)	106, 247, 272, 587
MlyI	GAGTC	2 cut(s)	223, 560
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	94, 274, 432
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	2 cut(s)	129, 375
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	347, 368
NlaIII	CATG	6 cut(s)	204, 297, 331, 347, 487, 569
NlaIV	GGNNCC	4 cut(s)	184, 370, 420, 496
NmuCI	GTSAC	2 cut(s)	150, 447
NspI	RCATGY	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	462
PleI	GAGTC	2 cut(s)	223, 559
PpsI	GAGTC	2 cut(s)	223, 559
PpuMI	RGGWCCY	2 cut(s)	419, 460
Psp5II	RGGWCCY	2 cut(s)	419, 460
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	4 cut(s)	184, 370, 420, 496
PspPI	GGNCC	2 cut(s)	419, 460
PspPPI	RGGWCCY	2 cut(s)	419, 460
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	129, 375
Sau3AI	GATC	2 cut(s)	347, 368
Sau96I	GGNCC	2 cut(s)	419, 460
SchI	GAGTC	2 cut(s)	223, 560
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	7 cut(s)	13, 39, 86, 240, 311, 462, 576
SfaNI	GCATC	2 cut(s)	122, 545
SinI	GGWCC	2 cut(s)	419, 460
Sse9I	AATT	4 cut(s)	106, 247, 272, 587
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	5 cut(s)	50, 171, 233, 320, 608
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	4 cut(s)	106, 247, 272, 587
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	129, 375
Tru9I	TTAA	2 cut(s)	129, 375
TscAI	CASTG	2 cut(s)	51, 357
TseFI	GTSAC	2 cut(s)	150, 447
Tsp45I	GTSAC	2 cut(s)	150, 447
TspDTI	ATGAA	5 cut(s)	67, 316, 503, 554, 580
TspRI	CASTG	2 cut(s)	51, 357
VpaK11BI	GGWCC	2 cut(s)	419, 460
XapI	RAATTY	2 cut(s)	106, 587
XbaI	TCTAGA	2 cut(s)	170, 232
XceI	RCATGY	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	5 cut(s)	50, 171, 233, 320, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.