Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018172

Physical Location & Seq

Genomic Coordinates Reverse (-)

46566845 .. 46567445

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGTCAGCTGATTGGCTTCCGGCTATCAATAACTACTTGTCACAGTATGTCTCCAGTTCTAGACTTACTGGCTCCCTTCCTGAATGTGCATGGAAAAATAAACATTGCAGTTTGCAGACTCTAGACCTATCATATAATTATGTAAGTATGGATGTACAACAATTTGTAGAGGCTTTGTCTACATGCAGTAATAGTAGCTTAGAAGTGCTAGATTTCATGTCAAGTAATCTCCATGGATCACTGCCTGAATCTTTGGGATCCCTTAAATATTTGGAAAGTCTTGGGTTCAGAAAGAACTCATTCTCGGGTCCTCTCCCAGCCACAATAGGAAATCTGTCACATTTGCAGGTCCTGGACCTGGCCTTTAACAACATGATGAATGGCAACATCCCAGTTTCAGAGTTGAGAGCATCGTTATTCTGGGAGTCTGGGGTGGTTCATGGGAAGGTGTTATATCTGAAATTCATCTTCCCAATCTCTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

163

Amino Acids

18.0

Weight (kDa)

5.72

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	65 - 126	9.1e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0483981 RchiOBHm_Chr4g0440621 RchiOBHm_Chr5g0022631
rosa_multiflora	Rmu_sc0001784.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056880 Rroxscaffold_5G00381440 Rroxscaffold_6G00397910
rosa_rugosa	Rorug01G0268600
rosa_samantha	Rh1AG250800 Rh1CG234600 Rh4DG385500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	182
AclWI	GGATC	3 cut(s)	247, 255, 268
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	354, 360
AluBI	AGCT	2 cut(s)	11, 201
AluI	AGCT	2 cut(s)	11, 201
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	247, 255, 268
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	311, 352, 358
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	3 cut(s)	311, 352, 358
BamHI	GGATCC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	356, 362
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	4 cut(s)	63, 125, 212, 485
BfuAI	ACCTGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	356, 362
Bme18I	GGWCC	3 cut(s)	311, 352, 358
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	311, 352, 358
BmiI	GGNNCC	3 cut(s)	76, 262, 312
BmrFI	CCNGG	2 cut(s)	356, 362
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	3 cut(s)	57, 76, 395
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	356, 362
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	160, 390
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	106
BseNI	ACTGG	3 cut(s)	57, 76, 395
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	239, 260
Bsp19I	CCATGG	1 cut(s)	235
BspANI	GGCC	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	76, 262, 312
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	3 cut(s)	247, 255, 268
BsrDI	GCAATG	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	3 cut(s)	57, 76, 395
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	239, 260
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	356, 362
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	160, 390
BstKTI	GATC	2 cut(s)	242, 263
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	2 cut(s)	239, 260
BstNI	CCWGG	2 cut(s)	356, 362
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	354, 360
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	160, 390
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	311, 352, 358
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	6 cut(s)	93, 186, 220, 236, 376, 443
CviJI	RGCY	8 cut(s)	11, 19, 26, 75, 176, 201, 323, 365
CviKI_1	RGCY	8 cut(s)	11, 19, 26, 75, 176, 201, 323, 365
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	2 cut(s)	241, 262
DpnII	GATC	2 cut(s)	239, 260
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	3 cut(s)	311, 352, 358
Eco88I	CYCGRG	1 cut(s)	307
EcoO109I	RGGNCCY	2 cut(s)	311, 352
EcoRII	CCWGG	2 cut(s)	354, 360
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	6 cut(s)	96, 189, 223, 239, 379, 446
FatI	CATG	6 cut(s)	92, 185, 219, 235, 375, 442
FblI	GTMKAC	1 cut(s)	182
FokI	GGATG	2 cut(s)	167, 377
FspBI	CTAG	4 cut(s)	63, 125, 212, 485
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	96, 189, 223, 239, 379, 446
HinfI	GANTC	3 cut(s)	121, 251, 428
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	293, 403, 462
Hpy188III	TCNNGA	3 cut(s)	63, 83, 125
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	2 cut(s)	89, 442
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	92, 111, 118, 189, 349
HpyF3I	CTNAG	1 cut(s)	202
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	96, 189, 223, 239, 379, 446
Kzo9I	GATC	2 cut(s)	239, 260
LmnI	GCTCC	1 cut(s)	80
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	4 cut(s)	63, 125, 212, 485
MaeIII	GTNAC	2 cut(s)	42, 339
MalI	GATC	2 cut(s)	241, 262
MboI	GATC	2 cut(s)	239, 260
MboII	GAAGA	1 cut(s)	463
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	3 cut(s)	139, 164, 464
MlyI	GAGTC	2 cut(s)	115, 437
MnlI	CCTC	2 cut(s)	166, 324
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	2 cut(s)	267, 369
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	356, 362
MvaI	CCWGG	2 cut(s)	356, 362
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	2 cut(s)	239, 260
NlaIII	CATG	6 cut(s)	96, 189, 223, 239, 379, 446
NlaIV	GGNNCC	3 cut(s)	76, 262, 312
NmuCI	GTSAC	2 cut(s)	42, 339
NspI	RCATGY	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	354
PleI	GAGTC	2 cut(s)	115, 436
PpsI	GAGTC	2 cut(s)	115, 436
PpuMI	RGGWCCY	2 cut(s)	311, 352
Psp5II	RGGWCCY	2 cut(s)	311, 352
Psp6I	CCWGG	2 cut(s)	354, 360
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	2 cut(s)	354, 360
PspN4I	GGNNCC	3 cut(s)	76, 262, 312
PspPI	GGNCC	3 cut(s)	311, 352, 358
PspPPI	RGGWCCY	2 cut(s)	311, 352
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	267, 369
Sau3AI	GATC	2 cut(s)	239, 260
Sau96I	GGNCC	3 cut(s)	311, 352, 358
SchI	GAGTC	2 cut(s)	115, 437
ScrFI	CCNGG	2 cut(s)	356, 362
SetI	ASST	6 cut(s)	13, 132, 203, 354, 363, 453
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	3 cut(s)	311, 352, 358
Sse9I	AATT	3 cut(s)	139, 164, 464
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	4 cut(s)	63, 125, 212, 485
StyD4I	CCNGG	2 cut(s)	354, 360
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	3 cut(s)	139, 164, 464
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	267, 369
Tru9I	TTAA	2 cut(s)	267, 369
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	42, 339
Tsp45I	GTSAC	2 cut(s)	42, 339
TspDTI	ATGAA	4 cut(s)	208, 395, 431, 457
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	3 cut(s)	311, 352, 358
XapI	RAATTY	1 cut(s)	464
XbaI	TCTAGA	2 cut(s)	62, 124
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	4 cut(s)	63, 125, 212, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.