RchiOBHm_Chr3g0484851

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016993
Physical Location & Seq
Reverse (-)
31324253 .. 31325200
948 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44954

Sequence Viewer

Length: 300 bp
ATGTGGGGATATGGTACAAGAAGATATCGGTTACTACCATTTTGTGGGTTGCCAACAGACACACCCCTCACTGATTCATTAGGTGTTCTCACGATCACACACCGCGAAATTCTTGTCCTTGTTAGCCAAAACAACAGCACAGTTTGGTCCTCCAACACATCAAGAACTGCACAAAATCCAGTGGCTCAGCTTTCCAACTCCAGAAATCCTGTTGTGAAAGATGGGAGTGATAATGAGGCAGAGAATTTTCGGTGGCAAAGTTATGATATTACTCAGGTGACACATTCCTACAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

7.93

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 20 - 91 4.8e-14 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 44
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 103
AcsI RAATTY 2 cut(s) 108, 244
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
ApoI RAATTY 2 cut(s) 108, 244
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 1 cut(s) 147
BccI CCATC 1 cut(s) 215
BlpI GCTNAGC 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 184
Bpu1102I GCTNAGC 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 200, 287
BseNI ACTGG 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 93
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 199, 286
BspFNI CGCG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 179
BssMI GATC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 186, 273
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstUI CGCG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 69, 186
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 15
CviJI RGCY 3 cut(s) 126, 185, 190
CviKI_1 RGCY 3 cut(s) 126, 185, 190
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 2 cut(s) 186, 273
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 147
EcoRV GATATC 1 cut(s) 26
FaiI YATR 3 cut(s) 12, 264, 298
GsuI CTGGAG 1 cut(s) 184
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 289
Hpy188III TCNNGA 3 cut(s) 91, 162, 201
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 186, 273
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 192, 214, 222, 260
MaeIII GTNAC 2 cut(s) 30, 277
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 33
MluCI AATT 2 cut(s) 108, 244
MmeI TCCRAC 2 cut(s) 177, 219
MnlI CCTC 3 cut(s) 77, 160, 229
MvnI CGCG 1 cut(s) 105
NdeII GATC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 44
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 147
SetI ASST 4 cut(s) 85, 192, 279, 297
SinI GGWCC 1 cut(s) 147
Sse9I AATT 2 cut(s) 108, 244
SsiI CCGC 1 cut(s) 103
TaaI ACNGT 1 cut(s) 142
TasI AATT 2 cut(s) 108, 244
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 2 cut(s) 76, 186
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 2 cut(s) 76, 186
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 108, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.