Rh3AG264300

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016993
Physical Location & Seq
Reverse (-)
29553346 .. 29574859
21514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG264300.1

Sequence Viewer

Length: 354 bp
ATGGTTGCAAGCCACGTATTCATCACAGTTACAACTTCCAAAGTAGATCATTCGAGTTGGTCCTCCAACACATCAAGAACTGCACAAAATCCAGTGGCTCAGCTTTCCAACTCCAGAAATCCTGTTGTGAAAGATGGGAGTGATAATGAGGCAGAGAATTTTCGGTGGCAAAGTTATGATATTACTCAGGCATGGAAGCTATTCACAAAAGGCAGATCCATCGAACTTCTTGATCCATTAGTAGAGACTCCAGCACTCTACATGAAGTCATGTTTAGGAATGGCAGAGCCGAGGGCGGCGAAGATCATTGATGATGGTGGCGATGGTGGTGATGATTTCTACGACGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

117

Amino Acids

12.89

Weight (kDa)

4.82

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 12 - 62 2.3e-06 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 296
AclWI GGATC 2 cut(s) 210, 227
AcsI RAATTY 1 cut(s) 157
AluBI AGCT 2 cut(s) 103, 199
AluI AGCT 2 cut(s) 103, 199
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 210, 227
ApoI RAATTY 1 cut(s) 157
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 341
AvaII GGWCC 1 cut(s) 60
BccI CCATC 4 cut(s) 128, 227, 308, 317
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BcoDI GTCTC 1 cut(s) 239
BisI GCNGC 1 cut(s) 297
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 97, 234
Bpu1102I GCTNAGC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 113, 200
BseNI ACTGG 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 239
Bsp143I GATC 4 cut(s) 46, 215, 232, 303
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 112, 199
BspPI GGATC 2 cut(s) 210, 227
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 4 cut(s) 46, 215, 232, 303
Bst4CI ACNGT 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 99, 186
BstKTI GATC 4 cut(s) 49, 218, 235, 306
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 46, 215, 232, 303
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 60
CviAII CATG 3 cut(s) 192, 262, 270
CviJI RGCY 5 cut(s) 12, 98, 103, 199, 289
CviKI_1 RGCY 5 cut(s) 12, 98, 103, 199, 289
DdeI CTNAG 2 cut(s) 99, 186
DpnI GATC 4 cut(s) 48, 217, 234, 305
DpnII GATC 4 cut(s) 46, 215, 232, 303
Eco47I GGWCC 1 cut(s) 60
FaeI CATG 3 cut(s) 195, 265, 273
FaiI YATR 4 cut(s) 177, 193, 263, 271
FatI CATG 3 cut(s) 191, 261, 269
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 97, 234
Hin1II CATG 3 cut(s) 195, 265, 273
HinfI GANTC 1 cut(s) 247
HphI GGTGA 1 cut(s) 341
Hpy188III TCNNGA 3 cut(s) 75, 114, 230
Hpy99I CGWCG 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 8, 83
HpyF3I CTNAG 2 cut(s) 99, 186
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 195, 265, 273
Kzo9I GATC 4 cut(s) 46, 215, 232, 303
LpnPI CCDG 5 cut(s) 105, 127, 135, 173, 264
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 28
MalI GATC 4 cut(s) 48, 217, 234, 305
MboI GATC 4 cut(s) 46, 215, 232, 303
MboII GAAGA 1 cut(s) 313
MflI RGATCY 1 cut(s) 215
MluCI AATT 2 cut(s) 157, 349
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 2 cut(s) 90, 132
MnlI CCTC 3 cut(s) 73, 142, 285
MroXI GAANNNNTTC 1 cut(s) 200
NdeII GATC 4 cut(s) 46, 215, 232, 303
NlaIII CATG 3 cut(s) 195, 265, 273
NmeAIII GCCGAG 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 16
PspPI GGNCC 1 cut(s) 60
PsuI RGATCY 1 cut(s) 215
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 4 cut(s) 46, 215, 232, 303
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 1 cut(s) 241
SetI ASST 3 cut(s) 18, 105, 201
SinI GGWCC 1 cut(s) 60
Sse9I AATT 2 cut(s) 157, 349
SsiI CCGC 1 cut(s) 296
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 53, 222
TasI AATT 2 cut(s) 157, 349
TauI GCSGC 1 cut(s) 299
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 10, 278
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.