RLG00000023192

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
19718832 .. 19721794
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023192

Sequence Viewer

Length: 1224 bp
ATGGGTCATAAAATTGTTCGTGATCAAGGTGTTAAGAATCCCGGAAAACGCAGTAGGTTGTGGATTGCTAATGATGTTTGTTATGTATTGCAAAATAATATGGGAACTGGAGCAATTGAATGCTTAGTCATGAGCATGGACCACATTTCAGATCTTGACATAAAACCTTCAGCCTTCAAACAGATGCATAATCTAAGATTACTTAAGTTACAGTTTAGGCGGTACTGGGACTCAATGTCATGCATCAACAAAGTTCACCTTCCTCGAGGTCTCGAGTGTCTTCCTCAAGCCCTTAGAATTATGCAGTGGGATGGGTACCCTTTGAATTCTCTGCCATCAACGTTTTGTGCAGAAAAGCTTGTTGAGCTTCGTATGTGGAACAGCCGACTTCAGCGACTTTGGAATGAAGGCCTGAAGATCAATCTTGGGAGCTTAAAACATATCGATCTTAGTGGCTCCAAGCACCTGGCTGATGTTTCATCTCTGATTGAGAGCCCAAATCTCGAGAGAATTAATCTTCAAGGTTGTACAAGTTTGCTTCAACTTCCTTCTTTTCAGCATCTTGCCAAGCTTACTCATCTCAATCTGTACAGCTGCTTCAATCTCAAAATTCTCCCAGAGATGCCAGGCAATCTGCAAACCTTATACTTGGTTCGTACTGCAATAGAAGAATTGCCTTCATCAATTTGGTGTCTCGAGAAGCTTGGTGAATTGGGTCTTGCAGAATGTCAAGAGCTTAAGAATCTTCCAAGCAGCACTTTAATAAAGTGTCTGGAAGGACCAGTGAGTGCTCATCACAGTTGCAACTTCCAAGTAGAACATTCGAGTACATTTCAGTCCATTGCAGACAACGAGACCATAGGTTCAACTGGTGGAACCTTTGAGCTTGGATTCTTCAGTCCCAGTTCTTCTACTACACGATATGTGGGGATATGGTACAAGAAGATATCGGTTACCACCATTTTATGGGTTGCCAACAGAGACACACCCCTCACTGATTCATTAGGTGTTCTCACGATCACACACCGCGGAATTCTTGTCCTTGTCAGCCAAAACAACAGAACAGTTTGGTCCTCCAACACGTCAAGAACTGCACAAAATCCAGTGGCTCAGGTTTCCAACTCCAGAAATCCTGTTGTGAAAGATGGGAGTGATAATGAGGCAGAGAATTTTCGGTGGCGAACTTATGATATTACCCAGGTGACACATTCCTACAAGGTATGA

Protein Analysis

408

Amino Acids

45.91

Weight (kDa)

8.7

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 320 - 398 2.4e-17 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccB7I CCANNNNNTGG 1 cut(s) 966
AccII CGCG 1 cut(s) 1029
AciI CCGC 3 cut(s) 220, 1027, 1029
AclI AACGTT 1 cut(s) 341
AcsI RAATTY 4 cut(s) 325, 609, 1032, 1168
AcuI CTGAAG 4 cut(s) 153, 374, 434, 880
AfaI GTAC 7 cut(s) 224, 317, 529, 590, 658, 829, 938
AfiI CCNNNNNNNGG 1 cut(s) 966
AflII CTTAAG 2 cut(s) 203, 737
AflIII ACRYGT 1 cut(s) 1080
AgsI TTSAA 7 cut(s) 119, 178, 325, 521, 542, 601, 867
AhdI GACNNNNNGTC 1 cut(s) 235
AjiI CACGTC 1 cut(s) 1083
AjnI CCWGG 3 cut(s) 465, 625, 1197
AluBI AGCT 8 cut(s) 358, 367, 432, 571, 594, 703, 736, 886
AluI AGCT 8 cut(s) 358, 367, 432, 571, 594, 703, 736, 886
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 4 cut(s) 275, 698, 848, 975
Ama87I CYCGRG 4 cut(s) 264, 272, 503, 695
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 594, 753
ApoI RAATTY 4 cut(s) 325, 609, 1032, 1168
AseI ATTAAT 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 315
AspS9I GGNCC 3 cut(s) 139, 779, 1071
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 3 cut(s) 248, 719, 1213
AvaI CYCGRG 4 cut(s) 264, 272, 503, 695
AvaII GGWCC 3 cut(s) 139, 779, 1071
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 497
BarI GAAGNNNNNNTAC 2 cut(s) 581, 613
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 581, 765
BccI CCATC 3 cut(s) 305, 343, 1139
BciT130I CCWGG 3 cut(s) 467, 627, 1199
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 4 cut(s) 275, 698, 848, 975
BfrI CTTAAG 2 cut(s) 203, 737
BglII AGATCT 1 cut(s) 151
BisI GCNGC 2 cut(s) 595, 754
BlsI GCNGC 2 cut(s) 596, 755
Bme1390I CCNGG 4 cut(s) 42, 467, 627, 1199
Bme18I GGWCC 3 cut(s) 139, 779, 1071
BmeRI GACNNNNNGTC 1 cut(s) 235
BmeT110I CYCGRG 4 cut(s) 264, 272, 503, 695
BmgBI CACGTC 1 cut(s) 1083
BmgT120I GGNCC 3 cut(s) 139, 779, 1071
BmiI GGNNCC 3 cut(s) 317, 457, 877
BmrFI CCNGG 4 cut(s) 42, 467, 627, 1199
BmrI ACTGGG 2 cut(s) 235, 897
BmsI GCATC 4 cut(s) 174, 252, 568, 612
BmuI ACTGGG 2 cut(s) 235, 897
BpiI GAAGAC 1 cut(s) 272
BpmI CTGGAG 2 cut(s) 129, 1108
Bpu10I CCTNAGC 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 42
Bsa29I ATCGAT 1 cut(s) 444
BsaI GGTCTC 2 cut(s) 275, 848
BsaJI CCNNGG 2 cut(s) 1027, 1197
Bsc4I CCNNNNNNNGG 1 cut(s) 966
Bse1I ACTGG 6 cut(s) 112, 230, 782, 874, 903, 1103
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 3 cut(s) 467, 627, 1199
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 1027, 1197
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 966
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 1 cut(s) 1124
BseNI ACTGG 6 cut(s) 112, 230, 782, 874, 903, 1103
BseXI GCAGC 2 cut(s) 581, 765
BsgI GTGCAG 2 cut(s) 369, 1077
Bsh1236I CGCG 1 cut(s) 1029
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 793
BsiHKCI CYCGRG 4 cut(s) 264, 272, 503, 695
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 2 cut(s) 242, 885
BslI CCNNNNNNNGG 1 cut(s) 966
BsmAI GTCTC 4 cut(s) 275, 698, 848, 975
BsmFI GGGAC 2 cut(s) 242, 885
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 1 cut(s) 411
Bso31I GGTCTC 2 cut(s) 275, 848
BsoBI CYCGRG 4 cut(s) 264, 272, 503, 695
Bsp1286I GDGCHC 2 cut(s) 497, 793
Bsp1407I TGTACA 2 cut(s) 527, 588
Bsp143I GATC 5 cut(s) 22, 151, 417, 445, 1017
BspACI CCGC 3 cut(s) 220, 1027, 1029
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 1123
BspDI ATCGAT 1 cut(s) 444
BspFNI CGCG 1 cut(s) 1029
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 317, 457, 877
BspT107I GGYRCC 1 cut(s) 315
BspTI CTTAAG 2 cut(s) 203, 737
BspTNI GGTCTC 2 cut(s) 275, 848
BsrDI GCAATG 1 cut(s) 840
BsrGI TGTACA 2 cut(s) 527, 588
BsrI ACTGG 6 cut(s) 112, 230, 782, 874, 903, 1103
BssECI CCNNGG 2 cut(s) 1027, 1197
BssMI GATC 5 cut(s) 22, 151, 417, 445, 1017
Bst2UI CCWGG 3 cut(s) 467, 627, 1199
Bst4CI ACNGT 3 cut(s) 213, 800, 1066
BstAFI CTTAAG 2 cut(s) 203, 737
BstAUI TGTACA 2 cut(s) 527, 588
BstDEI CTNAG 5 cut(s) 124, 194, 293, 449, 1110
BstDSI CCRYGG 1 cut(s) 1027
BstEII GGTNACC 1 cut(s) 952
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 1029
BstKTI GATC 5 cut(s) 25, 154, 420, 448, 1020
BstMAI GTCTC 4 cut(s) 275, 698, 848, 975
BstMBI GATC 5 cut(s) 22, 151, 417, 445, 1017
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 3 cut(s) 467, 627, 1199
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 4 cut(s) 40, 465, 625, 1197
BstUI CGCG 1 cut(s) 1029
BstV1I GCAGC 2 cut(s) 581, 765
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 444
BsuRI GGCC 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 1027
BtrI CACGTC 1 cut(s) 1083
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 4 cut(s) 311, 789, 993, 1110
CciI TCATGA 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 139, 779, 1071
Cfr42I CCGCGG 1 cut(s) 1030
ClaI ATCGAT 1 cut(s) 444
Csp6I GTAC 7 cut(s) 223, 316, 528, 589, 657, 828, 937
CviAII CATG 3 cut(s) 130, 136, 240
CviQI GTAC 7 cut(s) 223, 316, 528, 589, 657, 828, 937
DdeI CTNAG 5 cut(s) 124, 194, 293, 449, 1110
DpnI GATC 5 cut(s) 24, 153, 419, 447, 1019
DpnII GATC 5 cut(s) 22, 151, 417, 445, 1017
DriI GACNNNNNGTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 2 cut(s) 275, 848
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 3 cut(s) 139, 779, 1071
Eco57I CTGAAG 4 cut(s) 153, 374, 434, 880
Eco88I CYCGRG 4 cut(s) 264, 272, 503, 695
Eco91I GGTNACC 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 952
EcoRI GAATTC 2 cut(s) 325, 1032
EcoRII CCWGG 3 cut(s) 465, 625, 1197
EcoRV GATATC 1 cut(s) 948
EcoT22I ATGCAT 2 cut(s) 189, 245
EcoT38I GRGCYC 1 cut(s) 497
FaeI CATG 3 cut(s) 133, 139, 243
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 742, 774
FaqI GGGAC 2 cut(s) 242, 885
FatI CATG 3 cut(s) 129, 135, 239
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 595, 754
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 595, 754
GluI GCNGC 2 cut(s) 595, 754
GsuI CTGGAG 2 cut(s) 129, 1108
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 42
Hin1II CATG 3 cut(s) 133, 139, 243
HindIII AAGCTT 3 cut(s) 356, 569, 701
HinfI GANTC 5 cut(s) 37, 230, 742, 891, 998
HpaII CCGG 1 cut(s) 42
HphI GGTGA 3 cut(s) 248, 719, 1213
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 151, 486
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 7 cut(s) 177, 184, 269, 401, 558, 687, 770
HpyCH4III ACNGT 3 cut(s) 213, 800, 1066
HpyCH4IV ACGT 2 cut(s) 341, 1082
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 5 cut(s) 124, 194, 293, 449, 1110
HpySE526I ACGT 2 cut(s) 341, 1082
Hsp92II CATG 3 cut(s) 133, 139, 243
KpnI GGTACC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 22
KspI CCGCGG 1 cut(s) 1030
Kzo9I GATC 5 cut(s) 22, 151, 417, 445, 1017
LmnI GCTCC 3 cut(s) 110, 429, 461
Lsp1109I GCAGC 2 cut(s) 581, 765
LweI GCATC 4 cut(s) 174, 252, 568, 612
MaeII ACGT 2 cut(s) 341, 1082
MaeIII GTNAC 3 cut(s) 207, 952, 1201
MalI GATC 5 cut(s) 24, 153, 419, 447, 1019
MboI GATC 5 cut(s) 22, 151, 417, 445, 1017
MboII GAAGA 8 cut(s) 272, 427, 509, 680, 737, 886, 900, 955
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 497, 793
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 1101, 1143
MnlI CCTC 6 cut(s) 260, 273, 294, 1001, 1084, 1153
Mph1103I ATGCAT 2 cut(s) 189, 245
MseI TTAA 6 cut(s) 33, 204, 434, 513, 738, 761
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 594, 1029
MspCI CTTAAG 2 cut(s) 203, 737
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 4 cut(s) 42, 467, 627, 1199
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 3 cut(s) 467, 627, 1199
MvnI CGCG 1 cut(s) 1029
MwoI GCNNNNNNNGC 1 cut(s) 364
NciI CCSGG 1 cut(s) 42
NdeII GATC 5 cut(s) 22, 151, 417, 445, 1017
NlaIII CATG 3 cut(s) 133, 139, 243
NlaIV GGNNCC 3 cut(s) 317, 457, 877
NmuCI GTSAC 1 cut(s) 1201
NsiI ATGCAT 2 cut(s) 189, 245
PaeR7I CTCGAG 4 cut(s) 264, 272, 503, 695
PagI TCATGA 1 cut(s) 129
PceI AGGCCT 1 cut(s) 411
PctI GAATGC 1 cut(s) 125
PfeI GAWTC 4 cut(s) 37, 742, 891, 998
PflMI CCANNNNNTGG 1 cut(s) 966
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 2 cut(s) 596, 755
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 341
Psp6I CCWGG 3 cut(s) 465, 625, 1197
PspEI GGTNACC 1 cut(s) 952
PspGI CCWGG 3 cut(s) 465, 625, 1197
PspN4I GGNNCC 3 cut(s) 317, 457, 877
PspPI GGNCC 3 cut(s) 139, 779, 1071
PspXI VCTCGAGB 1 cut(s) 264
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 594
RsaI GTAC 7 cut(s) 224, 317, 529, 590, 658, 829, 938
RsaNI GTAC 7 cut(s) 223, 316, 528, 589, 657, 828, 937
RseI CAYNNNNRTG 1 cut(s) 134
SacII CCGCGG 1 cut(s) 1030
SaqAI TTAA 6 cut(s) 33, 204, 434, 513, 738, 761
SatI GCNGC 2 cut(s) 595, 754
Sau3AI GATC 5 cut(s) 22, 151, 417, 445, 1017
Sau96I GGNCC 3 cut(s) 139, 779, 1071
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 4 cut(s) 42, 467, 627, 1199
SduI GDGCHC 2 cut(s) 497, 793
SfaNI GCATC 4 cut(s) 174, 252, 568, 612
Sfr274I CTCGAG 4 cut(s) 264, 272, 503, 695
Sfr303I CCGCGG 1 cut(s) 1030
SgrBI CCGCGG 1 cut(s) 1030
SinI GGWCC 3 cut(s) 139, 779, 1071
SlaI CTCGAG 4 cut(s) 264, 272, 503, 695
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 7 cut(s) 203, 264, 272, 285, 503, 695, 737
SmoI CTYRAG 7 cut(s) 203, 264, 272, 285, 503, 695, 737
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 3 cut(s) 220, 1027, 1029
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 4 cut(s) 40, 465, 625, 1197
TaaI ACNGT 3 cut(s) 213, 800, 1066
TaiI ACGT 2 cut(s) 344, 1085
TaqI TCGA 6 cut(s) 265, 273, 444, 504, 696, 824
TatI WGTACW 3 cut(s) 527, 588, 827
TfiI GAWTC 4 cut(s) 37, 742, 891, 998
Tru1I TTAA 6 cut(s) 33, 204, 434, 513, 738, 761
Tru9I TTAA 6 cut(s) 33, 204, 434, 513, 738, 761
TscAI CASTG 4 cut(s) 311, 789, 1000, 1110
TseFI GTSAC 1 cut(s) 1201
TseI GCWGC 2 cut(s) 594, 753
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 4 cut(s) 420, 468, 669, 990
TspRI CASTG 4 cut(s) 311, 789, 1000, 1110
Van91I CCANNNNNTGG 1 cut(s) 966
Vha464I CTTAAG 2 cut(s) 203, 737
VpaK11BI GGWCC 3 cut(s) 139, 779, 1071
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 4 cut(s) 325, 609, 1032, 1168
XhoI CTCGAG 4 cut(s) 264, 272, 503, 695
Zsp2I ATGCAT 2 cut(s) 189, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.