Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006653.1

Orthogroup ID

OG0016993

Physical Location & Seq

Genomic Coordinates Reverse (-)

38474 .. 42311

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006653.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggaagcggaactgcaatcttcaaagaagaagatgacggcgaactacctccccacagtagtaaaaggaaaatcaacatcttttgaaatagctagcgttgttggtttacttgatttacaaggaatgaaagagggattggaagctttgagagagaatgataatggtgaatcactgcagttcaagagcacaataacagagttaattaggagaaatacgagtgaggaattgatgggaaacgaaaaggctagcttgctcatcacagttacaacttccaaagtagatcatttgagtacatttcagtccattgcagacggcgagaccataggttcaactggtggaacctttgagcttggattcttcagtcccggttcttctactatgcgatatgtggggatatggtacaagaagatatcggttgccaccattttgtgggttgccaacagagacacacccctcactgattcattaggtgttctcacgatcacacaccgcagaattcttgtccttgtcagccaaaacaacagcacagtttggtcctccaacatatcaagaactgcacaaaatccagtggctcagctttccaactccagaaatcctgttgtgaaagatgggagtgataatggggcagagaattttcggtggcaaagttatgatatcacccaggtgacacattcctacaaggatggtgttaactcaagaagtgggttgataccacaaagttgggtagtttacttaacagcacagattgataactgtgatagttgtgcactttgtggtccaaatggcccatgtaatattgagaactgcccagtatgtggttgcttgagaggattagtacccaaagttccaaaagattgggacatgatggattggtcaaatgggtatgttagaagaactgagactactaccgcaatcaatgctaaacctgctaaatccaatgtgaagaaagtgagaatcatagttagcactcttgtttaccctacggggcagctgacactgggtgtagccctgctcgtttatgtttggaagaaggatgaaaaactgagccgcagccacaaggaaaatctggaattaccattgtttgacttggctactgttgtaaatgcaacctgtaacttctcaaacgacaataaactaggagaaggtgactccagatctgtctttaagatagatcaaaaagcatgttactggattggcccaagcgctttgacattattaatggcattgctcgggagcttctctatcttcgtcgagattcttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

421

Amino Acids

46.28

Weight (kDa)

7.5

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016993)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0484811 RchiOBHm_Chr3g0484841 RchiOBHm_Chr3g0484851 RchiOBHm_Chr5g0026491
rosa_laevigata	RLG00000023192
rosa_multiflora	Rmu_co8515397.1_g000001 Rmu_sc0001689.1_g000012 Rmu_sc0001689.1_g000013 Rmu_sc0006653.1_g000008
rosa_rugosa	Rorug03G0213800
rosa_samantha	Rh3AG264300 Rh3AG264400 Rh3CG297100
rosa_wichuraiana	Rw1G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	934
AccB7I	CCANNNNNTGG	2 cut(s)	429, 815
AciI	CCGC	4 cut(s)	8, 490, 909, 1048
AcsI	RAATTY	2 cut(s)	495, 631
AcuI	CTGAAG	1 cut(s)	343
AdeI	CACNNNGTG	2 cut(s)	773, 1001
AfaI	GTAC	3 cut(s)	292, 401, 837
AfeI	AGCGCT	1 cut(s)	1204
AfiI	CCNNNNNNNGG	2 cut(s)	429, 815
AgsI	TTSAA	4 cut(s)	24, 86, 181, 330
AjnI	CCWGG	1 cut(s)	660
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AleI	CACNNNNGTG	1 cut(s)	662
AluBI	AGCT	7 cut(s)	92, 143, 249, 349, 577, 991, 1236
AluI	AGCT	7 cut(s)	92, 143, 249, 349, 577, 991, 1236
Alw21I	GWGCWC	2 cut(s)	188, 769
Alw26I	GTCTC	3 cut(s)	311, 438, 893
Alw44I	GTGCAC	1 cut(s)	765
Ama87I	CYCGRG	1 cut(s)	1229
Aor51HI	AGCGCT	1 cut(s)	1204
AoxI	GGCC	2 cut(s)	784, 1195
ApaLI	GTGCAC	1 cut(s)	765
ApeKI	GCWGC	2 cut(s)	988, 1050
ApoI	RAATTY	2 cut(s)	495, 631
AseI	ATTAAT	1 cut(s)	1217
AspLEI	GCGC	1 cut(s)	1205
AspS9I	GGNCC	4 cut(s)	534, 776, 785, 1196
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	4 cut(s)	176, 649, 676, 1157
AsuNHI	GCTAGC	2 cut(s)	92, 245
AvaI	CYCGRG	1 cut(s)	1229
AvaII	GGWCC	2 cut(s)	534, 776
BaeGI	GKGCMC	1 cut(s)	769
Bbv12I	GWGCWC	2 cut(s)	188, 769
BbvI	GCAGC	2 cut(s)	1000, 1062
BccI	CCATC	4 cut(s)	223, 602, 677, 859
BceAI	ACGGC	2 cut(s)	54, 328
BciT130I	CCWGG	1 cut(s)	662
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	3 cut(s)	311, 438, 893
BfaI	CTAG	3 cut(s)	93, 246, 1136
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	1206
BfuAI	ACCTGC	1 cut(s)	934
BglII	AGATCT	1 cut(s)	1154
BisI	GCNGC	3 cut(s)	989, 1048, 1051
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	3 cut(s)	990, 1049, 1052
Bme1390I	CCNGG	2 cut(s)	366, 662
Bme18I	GGWCC	2 cut(s)	534, 776
BmeT110I	CYCGRG	1 cut(s)	1229
BmgT120I	GGNCC	4 cut(s)	534, 776, 785, 1196
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	366, 662
BmrI	ACTGGG	2 cut(s)	803, 1007
BmtI	GCTAGC	2 cut(s)	96, 249
BmuI	ACTGGG	2 cut(s)	803, 1007
BpmI	CTGGAG	2 cut(s)	571, 1135
Bpu1102I	GCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	679, 844
BpuMI	CCSGG	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 815
Bse1I	ACTGG	5 cut(s)	337, 566, 809, 1002, 1193
Bse3DI	GCAATG	2 cut(s)	303, 1223
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	688, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	429, 815
BseMI	GCAATG	2 cut(s)	303, 1223
BseMII	CTCAG	3 cut(s)	587, 888, 1034
BseNI	ACTGG	5 cut(s)	337, 566, 809, 1002, 1193
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	2 cut(s)	1000, 1062
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	786, 1197
BsiHKAI	GWGCWC	2 cut(s)	188, 769
BsiHKCI	CYCGRG	1 cut(s)	1229
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	348, 872
BslI	CCNNNNNNNGG	2 cut(s)	429, 815
BsmAI	GTCTC	3 cut(s)	311, 438, 893
BsmFI	GGGAC	2 cut(s)	348, 872
BsnI	GGCC	2 cut(s)	786, 1197
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	1229
Bsp1286I	GDGCHC	2 cut(s)	188, 769
Bsp143I	GATC	4 cut(s)	280, 480, 1154, 1171
Bsp1720I	GCTNAGC	1 cut(s)	573
BspACI	CCGC	4 cut(s)	8, 490, 909, 1048
BspANI	GGCC	2 cut(s)	786, 1197
BspCNI	CTCAG	3 cut(s)	586, 889, 1035
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	934
BspOI	GCTAGC	2 cut(s)	96, 249
BspTNI	GGTCTC	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	303, 1223
BsrI	ACTGG	5 cut(s)	337, 566, 809, 1002, 1193
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	4 cut(s)	280, 480, 1154, 1171
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	5 cut(s)	58, 262, 529, 755, 1096
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	3 cut(s)	94, 247, 251
BstDEI	CTNAG	3 cut(s)	573, 897, 1043
BstF5I	GGATG	2 cut(s)	688, 1039
BstH2I	RGCGCY	1 cut(s)	1206
BstHHI	GCGC	1 cut(s)	1205
BstKTI	GATC	4 cut(s)	283, 483, 1157, 1174
BstMAI	GTCTC	3 cut(s)	311, 438, 893
BstMBI	GATC	4 cut(s)	280, 480, 1154, 1171
BstMWI	GCNNNNNNNGC	2 cut(s)	917, 926
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	1 cut(s)	1185
BstSCI	CCNGG	2 cut(s)	364, 660
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	2 cut(s)	1000, 1062
BstX2I	RGATCY	1 cut(s)	1154
BstXI	CCANNNNNNTGG	2 cut(s)	720, 855
BstYI	RGATCY	1 cut(s)	1154
BsuRI	GGCC	2 cut(s)	786, 1197
BtsCI	GGATG	2 cut(s)	688, 1039
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	4 cut(s)	170, 456, 573, 995
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	3 cut(s)	94, 247, 251
CfoI	GCGC	1 cut(s)	1205
Cfr13I	GGNCC	4 cut(s)	534, 776, 785, 1196
Csp6I	GTAC	3 cut(s)	291, 400, 836
CviAII	CATG	3 cut(s)	789, 862, 1182
CviQI	GTAC	3 cut(s)	291, 400, 836
DdeI	CTNAG	3 cut(s)	573, 897, 1043
DpnI	GATC	4 cut(s)	282, 482, 1156, 1173
DpnII	GATC	4 cut(s)	280, 480, 1154, 1171
DraIII	CACNNNGTG	2 cut(s)	773, 1001
Eco31I	GGTCTC	1 cut(s)	311
Eco32I	GATATC	2 cut(s)	411, 655
Eco47I	GGWCC	2 cut(s)	534, 776
Eco47III	AGCGCT	1 cut(s)	1204
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	1229
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	660
EcoRV	GATATC	2 cut(s)	411, 655
FaeI	CATG	3 cut(s)	792, 865, 1185
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	2 cut(s)	348, 872
FatI	CATG	3 cut(s)	788, 861, 1181
Fnu4HI	GCNGC	3 cut(s)	989, 1048, 1051
FokI	GGATG	2 cut(s)	695, 1046
Fsp4HI	GCNGC	3 cut(s)	989, 1048, 1051
FspBI	CTAG	3 cut(s)	93, 246, 1136
GlaI	GCGC	1 cut(s)	1204
GluI	GCNGC	3 cut(s)	989, 1048, 1051
GsuI	CTGGAG	2 cut(s)	571, 1135
HaeII	RGCGCY	1 cut(s)	1206
HaeIII	GGCC	2 cut(s)	786, 1197
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	1205
Hin1II	CATG	3 cut(s)	792, 865, 1185
Hin6I	GCGC	1 cut(s)	1203
HinP1I	GCGC	1 cut(s)	1203
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	6 cut(s)	167, 354, 461, 954, 1148, 1255
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	4 cut(s)	176, 649, 676, 1157
Hpy166II	GTNNAC	5 cut(s)	107, 691, 730, 767, 976
Hpy8I	GTNNAC	5 cut(s)	107, 691, 730, 767, 976
Hpy99I	CGWCG	1 cut(s)	1253
HpyAV	CCTTC	2 cut(s)	1024, 1136
HpyCH4III	ACNGT	5 cut(s)	58, 262, 529, 755, 1096
HpyCH4V	TGCA	6 cut(s)	16, 175, 308, 557, 767, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	917, 926
HpyF3I	CTNAG	3 cut(s)	573, 897, 1043
Hsp92II	CATG	3 cut(s)	792, 865, 1185
HspAI	GCGC	1 cut(s)	1203
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	4 cut(s)	280, 480, 1154, 1171
LmnI	GCTCC	1 cut(s)	1233
Lsp1109I	GCAGC	2 cut(s)	1000, 1062
MaeI	CTAG	3 cut(s)	93, 246, 1136
MaeIII	GTNAC	5 cut(s)	262, 664, 1112, 1145, 1184
MalI	GATC	4 cut(s)	282, 482, 1156, 1173
MboI	GATC	4 cut(s)	280, 480, 1154, 1171
MflI	RGATCY	1 cut(s)	1154
MhlI	GDGCHC	2 cut(s)	188, 769
MluCI	AATT	5 cut(s)	201, 224, 495, 631, 1070
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	2 cut(s)	564, 606
MnlI	CCTC	6 cut(s)	59, 124, 214, 464, 547, 821
MseI	TTAA	5 cut(s)	200, 690, 734, 1164, 1217
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	991
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	366, 662
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	2 cut(s)	917, 926
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	280, 480, 1154, 1171
NheI	GCTAGC	2 cut(s)	92, 245
NlaIII	CATG	3 cut(s)	792, 865, 1185
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	664, 1145
NspI	RCATGY	1 cut(s)	1185
OliI	CACNNNNGTG	1 cut(s)	662
PfeI	GAWTC	5 cut(s)	167, 354, 461, 954, 1255
PflMI	CCANNNNNTGG	2 cut(s)	429, 815
PkrI	GCNGC	3 cut(s)	990, 1049, 1052
PleI	GAGTC	1 cut(s)	1142
PpsI	GAGTC	1 cut(s)	1142
PshBI	ATTAAT	1 cut(s)	1217
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	4 cut(s)	534, 776, 785, 1196
PsrI	GAACNNNNNNTAC	4 cut(s)	828, 860, 886, 918
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	1154
PvuII	CAGCTG	1 cut(s)	991
RsaI	GTAC	3 cut(s)	292, 401, 837
RsaNI	GTAC	3 cut(s)	291, 400, 836
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	5 cut(s)	200, 690, 734, 1164, 1217
SatI	GCNGC	3 cut(s)	989, 1048, 1051
Sau3AI	GATC	4 cut(s)	280, 480, 1154, 1171
Sau96I	GGNCC	4 cut(s)	534, 776, 785, 1196
SchI	GAGTC	1 cut(s)	1142
ScrFI	CCNGG	2 cut(s)	366, 662
SduI	GDGCHC	2 cut(s)	188, 769
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	534, 776
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	694, 823
SmoI	CTYRAG	2 cut(s)	694, 823
Sse9I	AATT	5 cut(s)	201, 224, 495, 631, 1070
SsiI	CCGC	4 cut(s)	8, 490, 909, 1048
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	3 cut(s)	93, 246, 1136
StyD4I	CCNGG	2 cut(s)	364, 660
TaaI	ACNGT	5 cut(s)	58, 262, 529, 755, 1096
TaqI	TCGA	1 cut(s)	1251
TasI	AATT	5 cut(s)	201, 224, 495, 631, 1070
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	1050
TfiI	GAWTC	5 cut(s)	167, 354, 461, 954, 1255
Tru1I	TTAA	5 cut(s)	200, 690, 734, 1164, 1217
Tru9I	TTAA	5 cut(s)	200, 690, 734, 1164, 1217
TscAI	CASTG	4 cut(s)	177, 463, 573, 1002
TseFI	GTSAC	2 cut(s)	664, 1145
TseI	GCWGC	2 cut(s)	988, 1050
Tsp45I	GTSAC	2 cut(s)	664, 1145
TspDTI	ATGAA	3 cut(s)	140, 453, 1050
TspRI	CASTG	4 cut(s)	177, 463, 573, 1002
Van91I	CCANNNNNTGG	2 cut(s)	429, 815
VneI	GTGCAC	1 cut(s)	765
VpaK11BI	GGWCC	2 cut(s)	534, 776
VspI	ATTAAT	1 cut(s)	1217
XapI	RAATTY	2 cut(s)	495, 631
XceI	RCATGY	1 cut(s)	1185
XspI	CTAG	3 cut(s)	93, 246, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.