Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8515397.1

Orthogroup ID

OG0016993

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2832

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8515397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1016 bp

tgctcatcacagttacaacttccaaagtagatcatttgagtacatttcagtccattgcagacggcgagaccataggttcaactggtggaacctttgagcttggattcttcagtcccggttcttctactatgcgatatgtggggatatggtacaagaagatatcggttgccaccattttgtgggttgccaacagagacacacccctcactgattcattaggtgttctcacgatcacacaccgcagaattcttgtccttgtcagccaaaacaacagcacagtttggtcctccaacatatcaagaactgcacaaaatccagtggctcagctttccaactccagaaatcctgttgtgaaagatgggagtgataatggggcagagaattttcggtggcaaagttatgatatcacccaggtgacacattcctacaaggatggtgttaactcaagaagtgggttgataccacaaagttgggtagtttacttaacagcacagattgataactgtgatagttgtgcactttgtggtccaaatggcccatgtaatattgagaactgcccagtatgtggttgcttgagaggattagtacccaaagttccaaaagattgggacatgatggattggtcaaatgggtatgttagaagaactgagactactaccgcaatcaatgctaaacctgctaaatccaatgtgaagaaagtgagaatcatagttagcactcttgtttaccctacggggcagctgacactgggtgtagccctgctcgtttatgtttggaagaaggatgaaaaactgagccgcagccacaaggaaaatctggaattaccattgtttgacttggctactgttgtaaatgcaacctgtaacttctcaaacgacaataaactaggagaaggtgactccagatctgtctttaagatagatcaaaaagcatgttactggattggcccaagcgctttgacattattaatggcattgctcgggagcttctctatcttcgtcgagattcttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

337

Amino Acids

37.03

Weight (kDa)

8.33

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016993)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0484811 RchiOBHm_Chr3g0484841 RchiOBHm_Chr3g0484851 RchiOBHm_Chr5g0026491
rosa_laevigata	RLG00000023192
rosa_multiflora	Rmu_co8515397.1_g000001 Rmu_sc0001689.1_g000012 Rmu_sc0001689.1_g000013 Rmu_sc0006653.1_g000008
rosa_rugosa	Rorug03G0213800
rosa_samantha	Rh3AG264300 Rh3AG264400 Rh3CG297100
rosa_wichuraiana	Rw1G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	684
AccB7I	CCANNNNNTGG	2 cut(s)	179, 565
AciI	CCGC	3 cut(s)	240, 659, 798
AcsI	RAATTY	2 cut(s)	245, 381
AcuI	CTGAAG	1 cut(s)	93
AdeI	CACNNNGTG	2 cut(s)	523, 751
AfaI	GTAC	3 cut(s)	42, 151, 587
AfeI	AGCGCT	1 cut(s)	954
AfiI	CCNNNNNNNGG	2 cut(s)	179, 565
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	410
AleI	CACNNNNGTG	1 cut(s)	412
AluBI	AGCT	4 cut(s)	99, 327, 741, 986
AluI	AGCT	4 cut(s)	99, 327, 741, 986
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	3 cut(s)	61, 188, 643
Alw44I	GTGCAC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	979
Aor51HI	AGCGCT	1 cut(s)	954
AoxI	GGCC	2 cut(s)	534, 945
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	738, 800
ApoI	RAATTY	2 cut(s)	245, 381
AseI	ATTAAT	1 cut(s)	967
AspLEI	GCGC	1 cut(s)	955
AspS9I	GGNCC	4 cut(s)	284, 526, 535, 946
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	399, 426, 907
AvaI	CYCGRG	1 cut(s)	979
AvaII	GGWCC	2 cut(s)	284, 526
BaeGI	GKGCMC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	750, 812
BccI	CCATC	3 cut(s)	352, 427, 609
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	61, 188, 643
BfaI	CTAG	1 cut(s)	886
BfoI	RGCGCY	1 cut(s)	956
BfuAI	ACCTGC	1 cut(s)	684
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	3 cut(s)	739, 798, 801
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	3 cut(s)	740, 799, 802
Bme1390I	CCNGG	2 cut(s)	116, 412
Bme18I	GGWCC	2 cut(s)	284, 526
BmeT110I	CYCGRG	1 cut(s)	979
BmgT120I	GGNCC	4 cut(s)	284, 526, 535, 946
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	116, 412
BmrI	ACTGGG	2 cut(s)	553, 757
BmuI	ACTGGG	2 cut(s)	553, 757
BpmI	CTGGAG	2 cut(s)	321, 885
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	429, 594
BpuMI	CCSGG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 565
Bse1I	ACTGG	5 cut(s)	87, 316, 559, 752, 943
Bse3DI	GCAATG	2 cut(s)	53, 973
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	2 cut(s)	438, 789
BseLI	CCNNNNNNNGG	2 cut(s)	179, 565
BseMI	GCAATG	2 cut(s)	53, 973
BseMII	CTCAG	3 cut(s)	337, 638, 784
BseNI	ACTGG	5 cut(s)	87, 316, 559, 752, 943
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	750, 812
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	536, 947
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	979
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	98, 622
BslI	CCNNNNNNNGG	2 cut(s)	179, 565
BsmAI	GTCTC	3 cut(s)	61, 188, 643
BsmFI	GGGAC	2 cut(s)	98, 622
BsnI	GGCC	2 cut(s)	536, 947
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	979
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	4 cut(s)	30, 230, 904, 921
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	3 cut(s)	240, 659, 798
BspANI	GGCC	2 cut(s)	536, 947
BspCNI	CTCAG	3 cut(s)	336, 639, 785
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	684
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	53, 973
BsrI	ACTGG	5 cut(s)	87, 316, 559, 752, 943
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	4 cut(s)	30, 230, 904, 921
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	4 cut(s)	12, 279, 505, 846
BstAPI	GCANNNNNTGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	323, 647, 793
BstF5I	GGATG	2 cut(s)	438, 789
BstH2I	RGCGCY	1 cut(s)	956
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	4 cut(s)	33, 233, 907, 924
BstMAI	GTCTC	3 cut(s)	61, 188, 643
BstMBI	GATC	4 cut(s)	30, 230, 904, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	667, 676
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	935
BstSCI	CCNGG	2 cut(s)	114, 410
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	750, 812
BstX2I	RGATCY	1 cut(s)	904
BstXI	CCANNNNNNTGG	2 cut(s)	470, 605
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	2 cut(s)	536, 947
BtsCI	GGATG	2 cut(s)	438, 789
BtsIMutI	CAGTG	3 cut(s)	206, 323, 745
BveI	ACCTGC	1 cut(s)	684
CfoI	GCGC	1 cut(s)	955
Cfr13I	GGNCC	4 cut(s)	284, 526, 535, 946
Csp6I	GTAC	3 cut(s)	41, 150, 586
CviAII	CATG	3 cut(s)	539, 612, 932
CviQI	GTAC	3 cut(s)	41, 150, 586
DdeI	CTNAG	3 cut(s)	323, 647, 793
DpnI	GATC	4 cut(s)	32, 232, 906, 923
DpnII	GATC	4 cut(s)	30, 230, 904, 921
DraIII	CACNNNGTG	2 cut(s)	523, 751
Eco31I	GGTCTC	1 cut(s)	61
Eco32I	GATATC	2 cut(s)	161, 405
Eco47I	GGWCC	2 cut(s)	284, 526
Eco47III	AGCGCT	1 cut(s)	954
Eco57I	CTGAAG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	979
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	2 cut(s)	161, 405
FaeI	CATG	3 cut(s)	542, 615, 935
FaqI	GGGAC	2 cut(s)	98, 622
FatI	CATG	3 cut(s)	538, 611, 931
Fnu4HI	GCNGC	3 cut(s)	739, 798, 801
FokI	GGATG	2 cut(s)	445, 796
Fsp4HI	GCNGC	3 cut(s)	739, 798, 801
FspBI	CTAG	1 cut(s)	886
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	3 cut(s)	739, 798, 801
GsuI	CTGGAG	2 cut(s)	321, 885
HaeII	RGCGCY	1 cut(s)	956
HaeIII	GGCC	2 cut(s)	536, 947
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	3 cut(s)	542, 615, 935
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	5 cut(s)	104, 211, 704, 898, 1005
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	399, 426, 907
Hpy166II	GTNNAC	4 cut(s)	441, 480, 517, 726
Hpy188III	TCNNGA	9 cut(s)	228, 299, 338, 446, 817, 902, 981, 1002, 1009
Hpy8I	GTNNAC	4 cut(s)	441, 480, 517, 726
Hpy99I	CGWCG	1 cut(s)	1003
HpyAV	CCTTC	2 cut(s)	774, 886
HpyCH4III	ACNGT	4 cut(s)	12, 279, 505, 846
HpyCH4V	TGCA	4 cut(s)	58, 307, 517, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	667, 676
HpyF3I	CTNAG	3 cut(s)	323, 647, 793
Hsp92II	CATG	3 cut(s)	542, 615, 935
HspAI	GCGC	1 cut(s)	953
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	4 cut(s)	30, 230, 904, 921
LmnI	GCTCC	1 cut(s)	983
Lsp1109I	GCAGC	2 cut(s)	750, 812
MaeI	CTAG	1 cut(s)	886
MaeIII	GTNAC	5 cut(s)	12, 414, 862, 895, 934
MalI	GATC	4 cut(s)	32, 232, 906, 923
MboI	GATC	4 cut(s)	30, 230, 904, 921
MboII	GAAGA	7 cut(s)	99, 113, 168, 653, 705, 789, 987
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	3 cut(s)	245, 381, 820
MlyI	GAGTC	1 cut(s)	892
MmeI	TCCRAC	2 cut(s)	314, 356
MnlI	CCTC	3 cut(s)	214, 297, 571
MseI	TTAA	4 cut(s)	440, 484, 914, 967
MslI	CAYNNNNRTG	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	116, 412
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	667, 676
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	4 cut(s)	30, 230, 904, 921
NlaIII	CATG	3 cut(s)	542, 615, 935
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	414, 895
NspI	RCATGY	1 cut(s)	935
OliI	CACNNNNGTG	1 cut(s)	412
PfeI	GAWTC	4 cut(s)	104, 211, 704, 1005
PflMI	CCANNNNNTGG	2 cut(s)	179, 565
PkrI	GCNGC	3 cut(s)	740, 799, 802
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
PshBI	ATTAAT	1 cut(s)	967
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	4 cut(s)	284, 526, 535, 946
PsrI	GAACNNNNNNTAC	4 cut(s)	578, 610, 636, 668
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	741
RsaI	GTAC	3 cut(s)	42, 151, 587
RsaNI	GTAC	3 cut(s)	41, 150, 586
RseI	CAYNNNNRTG	1 cut(s)	412
SaqAI	TTAA	4 cut(s)	440, 484, 914, 967
SatI	GCNGC	3 cut(s)	739, 798, 801
Sau3AI	GATC	4 cut(s)	30, 230, 904, 921
Sau96I	GGNCC	4 cut(s)	284, 526, 535, 946
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	2 cut(s)	116, 412
SduI	GDGCHC	1 cut(s)	519
SinI	GGWCC	2 cut(s)	284, 526
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	2 cut(s)	444, 573
SmoI	CTYRAG	2 cut(s)	444, 573
Sse9I	AATT	3 cut(s)	245, 381, 820
SsiI	CCGC	3 cut(s)	240, 659, 798
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	1 cut(s)	886
StyD4I	CCNGG	2 cut(s)	114, 410
TaaI	ACNGT	4 cut(s)	12, 279, 505, 846
TaqI	TCGA	1 cut(s)	1001
TasI	AATT	3 cut(s)	245, 381, 820
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	4 cut(s)	104, 211, 704, 1005
Tru1I	TTAA	4 cut(s)	440, 484, 914, 967
Tru9I	TTAA	4 cut(s)	440, 484, 914, 967
TscAI	CASTG	3 cut(s)	213, 323, 752
TseFI	GTSAC	2 cut(s)	414, 895
TseI	GCWGC	2 cut(s)	738, 800
Tsp45I	GTSAC	2 cut(s)	414, 895
TspDTI	ATGAA	2 cut(s)	203, 800
TspRI	CASTG	3 cut(s)	213, 323, 752
Van91I	CCANNNNNTGG	2 cut(s)	179, 565
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	284, 526
VspI	ATTAAT	1 cut(s)	967
XapI	RAATTY	2 cut(s)	245, 381
XceI	RCATGY	1 cut(s)	935
XspI	CTAG	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.