RchiOBHm_Chr3g0487371

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018584
Physical Location & Seq
Reverse (-)
34592601 .. 34593212
612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45180

Sequence Viewer

Length: 573 bp
ATGCGTTCACTATCATATTATTGCCCCAAATGTTTGCCTTACACGGTAATCGTCGTCGGTGCGCTAATCGTCGGGTCCTGGCTTCTGGGAGGCTTGTTCTTGATGATTGACTGCCCCATCGAGGATCACATATTCAAACCACCACCACCAGAGTTCCAAGTCCGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGTTAACACCCTTAGAGTGGCACGTCAATCTACTCGCCCTAAACCCTAACACAAAGCATGTCAGAATCTTCTGTAGCACCCTCCGGGCCTCGCTTCTCTTCAACGGTGACCGAGAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTCTCAGCTTCAATTTTACAACGCTGCTGCAGCGTGATGACGCCCTAGTGAAGCAAATCTCGCAAGGAAACAGCTCGTTATTTGGGGTTCGAGTGTCTCTCTATTACTGGTACTTGGCTGACGTCTGGGTTTGGTGCCTCAATTATGACCGTCGGAAGGAGATCTTGTTGAAAGATGTCCCATTTCTGGTTTCTTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

190

Amino Acids

21.75

Weight (kDa)

6.82

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 504
AccBSI CCGCTC 1 cut(s) 165
AciI CCGC 1 cut(s) 163
AclWI GGATC 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 549
AcvI CACGTG 1 cut(s) 333
AcyI GRCGYC 2 cut(s) 411, 492
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 4 cut(s) 121, 222, 526, 556
AgsI TTSAA 4 cut(s) 136, 307, 382, 541
AhlI ACTAGT 1 cut(s) 194
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 3 cut(s) 170, 378, 444
AluI AGCT 3 cut(s) 170, 378, 444
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 132
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 4 cut(s) 170, 394, 397, 400
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 75, 291
AsuC2I CCSGG 3 cut(s) 290, 360, 361
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 504
BbrPI CACGTG 1 cut(s) 333
BbvI GCAGC 4 cut(s) 157, 381, 384, 412
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 79
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 3 cut(s) 290, 360, 361
BcoDI GTCTC 1 cut(s) 471
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 2 cut(s) 195, 416
BfmI CTRYAG 2 cut(s) 277, 398
BfuI GTATCC 1 cut(s) 187
BglII AGATCT 1 cut(s) 531
BisI GCNGC 4 cut(s) 171, 395, 398, 401
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 4 cut(s) 172, 396, 399, 402
Bme1390I CCNGG 4 cut(s) 79, 290, 360, 361
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 75, 291
BmiI GGNNCC 2 cut(s) 76, 506
BmrFI CCNGG 4 cut(s) 79, 290, 360, 361
BplI GAGNNNNNCTC 2 cut(s) 453, 485
Bpu1102I GCTNAGC 1 cut(s) 166
BpuMI CCSGG 3 cut(s) 290, 360, 361
BsaAI YACGTR 1 cut(s) 333
BsaHI GRCGYC 2 cut(s) 411, 492
BsaJI CCNNGG 2 cut(s) 358, 359
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 222, 526, 556
Bse1I ACTGG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 358, 359
BseLI CCNNNNNNNGG 4 cut(s) 121, 222, 526, 556
BseMII CTCAG 3 cut(s) 180, 195, 388
BseNI ACTGG 1 cut(s) 482
BseXI GCAGC 4 cut(s) 157, 381, 384, 412
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 289, 360
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 4 cut(s) 121, 222, 526, 556
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 533
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 2 cut(s) 124, 531
Bsp1720I GCTNAGC 1 cut(s) 166
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 3 cut(s) 179, 196, 387
BspLI GGNNCC 2 cut(s) 76, 506
BspMAI CTGCAG 1 cut(s) 402
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 358, 359
BssMI GATC 2 cut(s) 124, 531
BssNI GRCGYC 2 cut(s) 411, 492
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 46, 311, 521
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 2 cut(s) 411, 492
BstBAI YACGTR 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 166, 204, 217, 374
BstEII GGTNACC 1 cut(s) 311
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 127, 534
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 2 cut(s) 124, 531
BstMWI GCNNNNNNNGC 2 cut(s) 400, 430
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 4 cut(s) 77, 288, 358, 359
BstSFI CTRYAG 2 cut(s) 277, 398
BstV1I GCAGC 4 cut(s) 157, 381, 384, 412
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 293
BtrI CACGTC 1 cut(s) 229
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 75, 291
Cfr9I CCCGGG 1 cut(s) 359
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 82, 93, 170, 293, 378, 444, 488
CviKI_1 RGCY 7 cut(s) 82, 93, 170, 293, 378, 444, 488
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 4 cut(s) 166, 204, 217, 374
DpnI GATC 2 cut(s) 126, 533
DpnII GATC 2 cut(s) 124, 531
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 549
Eco72I CACGTG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 75
EcoO65I GGTNACC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 346
FaeI CATG 1 cut(s) 266
FaiI YATR 4 cut(s) 16, 131, 264, 516
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 533
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 171, 395, 398, 401
Fsp4HI GCNGC 4 cut(s) 171, 395, 398, 401
FspBI CTAG 2 cut(s) 195, 416
GlaI GCGC 1 cut(s) 63
GluI GCNGC 4 cut(s) 171, 395, 398, 401
HaeIII GGCC 1 cut(s) 293
HapII CCGG 2 cut(s) 289, 360
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 2 cut(s) 411, 492
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 1 cut(s) 270
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 2 cut(s) 289, 360
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 8, 210
Hpy188I TCNGA 3 cut(s) 269, 525, 568
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 8, 210
Hpy99I CGWCG 4 cut(s) 56, 59, 74, 525
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 3 cut(s) 46, 311, 521
HpyCH4IV ACGT 3 cut(s) 228, 332, 492
HpyCH4V TGCA 3 cut(s) 326, 340, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 430
HpyF3I CTNAG 4 cut(s) 166, 204, 217, 374
HpySE526I ACGT 3 cut(s) 228, 332, 492
Hsp92I GRCGYC 2 cut(s) 411, 492
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 62
KspAI GTTAAC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 124, 531
Lsp1109I GCAGC 4 cut(s) 157, 381, 384, 412
MaeI CTAG 2 cut(s) 195, 416
MaeII ACGT 3 cut(s) 228, 332, 492
MaeIII GTNAC 1 cut(s) 311
MalI GATC 2 cut(s) 126, 533
MbiI CCGCTC 1 cut(s) 165
MboI GATC 2 cut(s) 124, 531
MboII GAAGA 3 cut(s) 265, 295, 555
MflI RGATCY 1 cut(s) 531
MluCI AATT 3 cut(s) 321, 382, 511
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 5 cut(s) 83, 115, 296, 304, 518
MseI TTAA 2 cut(s) 209, 354
MslI CAYNNNNRTG 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 289, 360
MspR9I CCNGG 4 cut(s) 79, 290, 360, 361
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 400, 430
NciI CCSGG 3 cut(s) 290, 360, 361
NdeII GATC 2 cut(s) 124, 531
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 2 cut(s) 76, 506
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 266
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 4 cut(s) 172, 396, 399, 402
PmaCI CACGTG 1 cut(s) 333
PmlI CACGTG 1 cut(s) 333
Ppu21I YACGTR 1 cut(s) 333
PpuMI RGGWCCY 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 77
PspCI CACGTG 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 76, 506
PspPI GGNCC 2 cut(s) 75, 291
PspPPI RGGWCCY 1 cut(s) 75
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 531
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 2 cut(s) 209, 354
SatI GCNGC 4 cut(s) 171, 395, 398, 401
Sau3AI GATC 2 cut(s) 124, 531
Sau96I GGNCC 2 cut(s) 75, 291
ScrFI CCNGG 4 cut(s) 79, 290, 360, 361
SetI ASST 6 cut(s) 172, 231, 335, 380, 446, 495
SfcI CTRYAG 2 cut(s) 277, 398
SinI GGWCC 1 cut(s) 75
SmaI CCCGGG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 331
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 3 cut(s) 321, 382, 511
SsiI CCGC 1 cut(s) 163
SspMI CTAG 2 cut(s) 195, 416
StyD4I CCNGG 4 cut(s) 77, 288, 358, 359
TaaI ACNGT 3 cut(s) 46, 311, 521
TaiI ACGT 3 cut(s) 231, 335, 495
TaqI TCGA 2 cut(s) 120, 460
TaqII GACCGA 1 cut(s) 330
TasI AATT 3 cut(s) 321, 382, 511
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 2 cut(s) 209, 354
Tru9I TTAA 2 cut(s) 209, 354
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 4 cut(s) 170, 394, 397, 400
Tsp45I GTSAC 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 75
XceI RCATGY 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 359
XspI CTAG 2 cut(s) 195, 416
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.