Rh3DG316700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018584
Physical Location & Seq
Reverse (-)
34104535 .. 34105140
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG316700.1

Sequence Viewer

Length: 606 bp
ATGGCATATTATCGTCGTGACGAGGACTACAACTGCTGCGAGTGCATTGAATATTGCCCCAAATGGTTCCAGAACACGATGGACGTCGTCGGTGGGCTATGCGCCTCGTTCTGGATTCTGGCATGTTTGTTCATGGTTATTGACTGCCCCGTCGAGAATCACAAATTCAAACCACCACGACCAGAGTTCCAAGTGCGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGATAACACCCTTACAGTGGCACGTCAATCTACTCGCCCTAAACCCTAACACAAAGCATGTCGGAATCTTTTGTCGCACACTCCGGACCTCGCTCCTCTTCAATGGTGACCAAGAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTGTCAGTTTCAATATTACAACGGTGCTGCAGCGTGATGACGCCCTAGTGAAGCAAATCTCGCAAGGAAACAGCTCGTTATTTGGGGTTAAGGTGTCTCTCTATTACTACTACACGGCTGACGTCTGGGTTTGGTGCCTCAATTATGACCGTCAGAAAGAGTTATTGTTGAAAGATGTCCCATTTCAGGTTTCTTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

201

Amino Acids

23.28

Weight (kDa)

5.63

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AatII GACGTC 2 cut(s) 87, 528
AccB1I GGYRCC 1 cut(s) 537
AccIII TCCGGA 1 cut(s) 321
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 582
AcvI CACGTG 1 cut(s) 366
AcyI GRCGYC 3 cut(s) 84, 444, 525
AfiI CCNNNNNNNGG 3 cut(s) 111, 255, 589
AgsI TTSAA 5 cut(s) 50, 169, 340, 415, 574
AhlI ACTAGT 1 cut(s) 227
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 2 cut(s) 203, 477
AluI AGCT 2 cut(s) 203, 477
Alw26I GTCTC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 321
ApeKI GCWGC 4 cut(s) 36, 203, 430, 433
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 2 cut(s) 104, 198
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 2 cut(s) 393, 394
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 537
BbrPI CACGTG 1 cut(s) 366
BbvI GCAGC 4 cut(s) 23, 190, 417, 445
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 191, 534
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 2 cut(s) 393, 394
BcoDI GTCTC 1 cut(s) 504
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 2 cut(s) 228, 449
BfmI CTRYAG 1 cut(s) 431
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 4 cut(s) 37, 204, 431, 434
BlpI GCTNAGC 1 cut(s) 199
BlsI GCNGC 4 cut(s) 38, 205, 432, 435
Bme1390I CCNGG 2 cut(s) 393, 394
Bme18I GGWCC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 2 cut(s) 68, 539
BmrFI CCNGG 2 cut(s) 393, 394
Bpu1102I GCTNAGC 1 cut(s) 199
BpuMI CCSGG 2 cut(s) 393, 394
BsaAI YACGTR 1 cut(s) 366
BsaHI GRCGYC 3 cut(s) 84, 444, 525
BsaJI CCNNGG 2 cut(s) 391, 392
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 255, 589
BseAI TCCGGA 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 391, 392
BseLI CCNNNNNNNGG 3 cut(s) 111, 255, 589
BseMII CTCAG 2 cut(s) 213, 228
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 4 cut(s) 23, 190, 417, 445
BshNI GGYRCC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 322, 393
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 111, 255, 589
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 392
Bsp13I TCCGGA 1 cut(s) 321
Bsp1720I GCTNAGC 1 cut(s) 199
BspCNI CTCAG 2 cut(s) 212, 229
BspEI TCCGGA 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 68, 539
BspMAI CTGCAG 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 391, 392
BssNI GRCGYC 3 cut(s) 84, 444, 525
Bst4CI ACNGT 4 cut(s) 255, 406, 427, 554
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 3 cut(s) 84, 444, 525
BstBAI YACGTR 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 199, 237
BstEII GGTNACC 1 cut(s) 344
BstHHI GCGC 2 cut(s) 104, 198
BstMAI GTCTC 1 cut(s) 504
BstMWI GCNNNNNNNGC 2 cut(s) 42, 463
BstNSI RCATGY 2 cut(s) 126, 299
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 391, 392
BstSFI CTRYAG 1 cut(s) 431
BstV1I GCAGC 4 cut(s) 23, 190, 417, 445
BsuI GTATCC 1 cut(s) 220
BtrI CACGTC 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 260
CfoI GCGC 2 cut(s) 104, 198
Cfr13I GGNCC 1 cut(s) 324
Cfr9I CCCGGG 1 cut(s) 392
CseI GACGC 1 cut(s) 452
CviAII CATG 3 cut(s) 123, 133, 296
CviJI RGCY 4 cut(s) 97, 203, 477, 521
CviKI_1 RGCY 4 cut(s) 97, 203, 477, 521
DdeI CTNAG 2 cut(s) 199, 237
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 582
Eco72I CACGTG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRV GATATC 1 cut(s) 379
FaeI CATG 3 cut(s) 126, 136, 299
FaiI YATR 6 cut(s) 7, 100, 124, 134, 297, 549
FaqI GGGAC 1 cut(s) 566
FatI CATG 3 cut(s) 122, 132, 295
Fnu4HI GCNGC 4 cut(s) 37, 204, 431, 434
Fsp4HI GCNGC 4 cut(s) 37, 204, 431, 434
FspBI CTAG 2 cut(s) 228, 449
GlaI GCGC 2 cut(s) 103, 197
GluI GCNGC 4 cut(s) 37, 204, 431, 434
HapII CCGG 2 cut(s) 322, 393
HgaI GACGC 1 cut(s) 452
HhaI GCGC 2 cut(s) 104, 198
Hin1I GRCGYC 3 cut(s) 84, 444, 525
Hin1II CATG 3 cut(s) 126, 136, 299
Hin6I GCGC 2 cut(s) 102, 196
HinP1I GCGC 2 cut(s) 102, 196
HinfI GANTC 3 cut(s) 115, 157, 303
HpaII CCGG 2 cut(s) 322, 393
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 302, 558, 601
Hpy188III TCNNGA 5 cut(s) 17, 70, 112, 154, 322
Hpy99I CGWCG 4 cut(s) 18, 89, 92, 155
HpyCH4III ACNGT 4 cut(s) 255, 406, 427, 554
HpyCH4IV ACGT 4 cut(s) 84, 261, 365, 525
HpyCH4V TGCA 4 cut(s) 45, 359, 373, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 463
HpyF3I CTNAG 2 cut(s) 199, 237
HpySE526I ACGT 4 cut(s) 84, 261, 365, 525
Hsp92I GRCGYC 3 cut(s) 84, 444, 525
Hsp92II CATG 3 cut(s) 126, 136, 299
HspAI GCGC 2 cut(s) 102, 196
Kpn2I TCCGGA 1 cut(s) 321
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 4 cut(s) 23, 190, 417, 445
MaeI CTAG 2 cut(s) 228, 449
MaeII ACGT 4 cut(s) 84, 261, 365, 525
MaeIII GTNAC 2 cut(s) 17, 344
MboII GAAGA 2 cut(s) 328, 588
MluCI AATT 3 cut(s) 164, 354, 544
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 5 cut(s) 16, 115, 337, 344, 551
MroI TCCGGA 1 cut(s) 321
MseI TTAA 2 cut(s) 387, 492
MslI CAYNNNNRTG 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 322, 393
MspR9I CCNGG 2 cut(s) 393, 394
Mva1269I GAATGC 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 42, 463
NciI CCSGG 2 cut(s) 393, 394
NlaIII CATG 3 cut(s) 126, 136, 299
NlaIV GGNNCC 2 cut(s) 68, 539
NmuCI GTSAC 2 cut(s) 17, 344
NspI RCATGY 2 cut(s) 126, 299
PctI GAATGC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 115, 157, 303
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 38, 205, 432, 435
PmaCI CACGTG 1 cut(s) 366
PmlI CACGTG 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 366
PspCI CACGTG 1 cut(s) 366
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 68, 539
PspPI GGNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 435
PsyI GACNNNGTC 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 2 cut(s) 387, 492
SatI GCNGC 4 cut(s) 37, 204, 431, 434
Sau96I GGNCC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 393, 394
SetI ASST 9 cut(s) 87, 205, 264, 329, 368, 479, 498, 528, 594
SfcI CTRYAG 1 cut(s) 431
SinI GGWCC 1 cut(s) 324
SmaI CCCGGG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 364
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 3 cut(s) 164, 354, 544
SspI AATATT 2 cut(s) 53, 418
SspMI CTAG 2 cut(s) 228, 449
StyD4I CCNGG 2 cut(s) 391, 392
TaaI ACNGT 4 cut(s) 255, 406, 427, 554
TaiI ACGT 4 cut(s) 87, 264, 368, 528
TaqI TCGA 1 cut(s) 153
TasI AATT 3 cut(s) 164, 354, 544
TfiI GAWTC 3 cut(s) 115, 157, 303
Tru1I TTAA 2 cut(s) 387, 492
Tru9I TTAA 2 cut(s) 387, 492
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 2 cut(s) 17, 344
TseI GCWGC 4 cut(s) 36, 203, 430, 433
Tsp45I GTSAC 2 cut(s) 17, 344
TspDTI ATGAA 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 392
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 164
XceI RCATGY 2 cut(s) 126, 299
XmaI CCCGGG 1 cut(s) 392
XspI CTAG 2 cut(s) 228, 449
ZraI GACGTC 2 cut(s) 85, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.