Rh3DG313100

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018584
Physical Location & Seq
Reverse (-)
33644647 .. 33645222
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG313100.1

Sequence Viewer

Length: 576 bp
ATGATGCATTCACTATCATATTATTGCCCCAAATGTTTGCCTTACACGATAATCGTCGTCGGTGCGCTAATCGTCGGGTTCTGGCTTCTGGGAGGCTTGTTCTTGATGATTGACTGCCCCATCGAGGATCACATATTCAAACCACCACCACCAGAGTTCCAAGTCCGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGTTAACACCCTTAGAGTGGCACGTCAATCTACTCGCCCTAAACCCTAGCACAAAGCATGTCAGAATCTTCTGTAGCACCCTCCGGGCCTCGCTTCTCTTCAACGGTGACCGAGAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTGTCAGTTTCAATTTTACAACGCTGCTGCACCGTGATGACGCCCTGGTGAAGCAAATCTCGCAAGGAAACAGCTCGTTATTTGGGGTTCGAGTGTCTCTCTATTACTGGTACTTGGCTGACGTCTGGGTTTGGTGCCTCAATTATGACCGTCGGAAGGAGTTGTTGTTGAAAGATGTCCCATTTCAGGTTTCTTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

191

Amino Acids

21.92

Weight (kDa)

6.5

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 507
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 552
AcvI CACGTG 1 cut(s) 336
AcyI GRCGYC 2 cut(s) 414, 495
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 4 cut(s) 124, 225, 529, 559
AgsI TTSAA 4 cut(s) 139, 310, 385, 544
AhlI ACTAGT 1 cut(s) 197
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 2 cut(s) 173, 447
AluI AGCT 2 cut(s) 173, 447
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 3 cut(s) 173, 397, 400
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 3 cut(s) 293, 363, 364
AsuHPI GGTGA 2 cut(s) 326, 433
AvaI CYCGRG 1 cut(s) 362
BanI GGYRCC 1 cut(s) 507
BbrPI CACGTG 1 cut(s) 336
BbvI GCAGC 3 cut(s) 160, 384, 387
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 419
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 3 cut(s) 293, 363, 364
BcoDI GTCTC 1 cut(s) 474
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 2 cut(s) 198, 255
BfmI CTRYAG 1 cut(s) 280
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 3 cut(s) 174, 398, 401
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 3 cut(s) 175, 399, 402
Bme1390I CCNGG 4 cut(s) 293, 363, 364, 419
BmeT110I CYCGRG 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 4 cut(s) 293, 363, 364, 419
BplI GAGNNNNNCTC 2 cut(s) 456, 488
Bpu1102I GCTNAGC 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 293, 363, 364
BsaAI YACGTR 1 cut(s) 336
BsaHI GRCGYC 2 cut(s) 414, 495
BsaJI CCNNGG 3 cut(s) 361, 362, 417
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 225, 529, 559
Bse1I ACTGG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 361, 362, 417
BseLI CCNNNNNNNGG 4 cut(s) 124, 225, 529, 559
BseMII CTCAG 2 cut(s) 183, 198
BseNI ACTGG 1 cut(s) 485
BseXI GCAGC 3 cut(s) 160, 384, 387
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 2 cut(s) 292, 363
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 4 cut(s) 124, 225, 529, 559
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 2 cut(s) 7, 329
BsnI GGCC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 1 cut(s) 127
Bsp1720I GCTNAGC 1 cut(s) 169
BspACI CCGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 182, 199
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 507
BsrBI CCGCTC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 361, 362, 417
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 2 cut(s) 414, 495
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 4 cut(s) 314, 376, 407, 524
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 414, 495
BstBAI YACGTR 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 169, 207, 220
BstEII GGTNACC 1 cut(s) 314
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 433
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 4 cut(s) 291, 361, 362, 417
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 160, 384, 387
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 296
BtrI CACGTC 1 cut(s) 232
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 294
Cfr9I CCCGGG 1 cut(s) 362
CseI GACGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 484
CviAII CATG 1 cut(s) 266
CviJI RGCY 6 cut(s) 85, 96, 173, 296, 447, 491
CviKI_1 RGCY 6 cut(s) 85, 96, 173, 296, 447, 491
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 3 cut(s) 169, 207, 220
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 9
FaeI CATG 1 cut(s) 269
FaiI YATR 4 cut(s) 19, 134, 267, 519
FaqI GGGAC 1 cut(s) 536
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 174, 398, 401
Fsp4HI GCNGC 3 cut(s) 174, 398, 401
FspBI CTAG 2 cut(s) 198, 255
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 174, 398, 401
HaeIII GGCC 1 cut(s) 296
HapII CCGG 2 cut(s) 292, 363
HgaI GACGC 1 cut(s) 422
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 2 cut(s) 414, 495
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 273
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 2 cut(s) 292, 363
HphI GGTGA 2 cut(s) 326, 433
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 272, 528, 571
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 4 cut(s) 59, 62, 77, 528
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 4 cut(s) 314, 376, 407, 524
HpyCH4IV ACGT 3 cut(s) 231, 335, 495
HpyCH4V TGCA 4 cut(s) 7, 329, 343, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 433
HpyF3I CTNAG 3 cut(s) 169, 207, 220
HpySE526I ACGT 3 cut(s) 231, 335, 495
Hsp92I GRCGYC 2 cut(s) 414, 495
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 127
Lsp1109I GCAGC 3 cut(s) 160, 384, 387
MaeI CTAG 2 cut(s) 198, 255
MaeII ACGT 3 cut(s) 231, 335, 495
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 129
MbiI CCGCTC 1 cut(s) 168
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 268, 298, 558
MluCI AATT 3 cut(s) 324, 385, 514
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 5 cut(s) 86, 118, 299, 307, 521
Mph1103I ATGCAT 1 cut(s) 9
MseI TTAA 2 cut(s) 212, 357
MslI CAYNNNNRTG 2 cut(s) 334, 408
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 292, 363
MspR9I CCNGG 4 cut(s) 293, 363, 364, 419
Mva1269I GAATGC 2 cut(s) 7, 329
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 433
NciI CCSGG 3 cut(s) 293, 363, 364
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 269
PctI GAATGC 2 cut(s) 7, 329
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 3 cut(s) 175, 399, 402
PmaCI CACGTG 1 cut(s) 336
PmlI CACGTG 1 cut(s) 336
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 417
PspCI CACGTG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 2 cut(s) 334, 408
SaqAI TTAA 2 cut(s) 212, 357
SatI GCNGC 3 cut(s) 174, 398, 401
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 4 cut(s) 293, 363, 364, 419
SetI ASST 6 cut(s) 175, 234, 338, 449, 498, 564
SfcI CTRYAG 1 cut(s) 280
SmaI CCCGGG 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 334, 408
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 3 cut(s) 324, 385, 514
SsiI CCGC 1 cut(s) 166
SspMI CTAG 2 cut(s) 198, 255
StyD4I CCNGG 4 cut(s) 291, 361, 362, 417
TaaI ACNGT 4 cut(s) 314, 376, 407, 524
TaiI ACGT 3 cut(s) 234, 338, 498
TaqI TCGA 2 cut(s) 123, 463
TaqII GACCGA 1 cut(s) 333
TasI AATT 3 cut(s) 324, 385, 514
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 212, 357
Tru9I TTAA 2 cut(s) 212, 357
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 173, 397, 400
Tsp45I GTSAC 1 cut(s) 314
TspMI CCCGGG 1 cut(s) 362
XceI RCATGY 1 cut(s) 269
XmaI CCCGGG 1 cut(s) 362
XspI CTAG 2 cut(s) 198, 255
ZraI GACGTC 1 cut(s) 496
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.