Rh3CG318200

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018584
Physical Location & Seq
Reverse (-)
34041475 .. 34042065
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG318200.1

Sequence Viewer

Length: 474 bp
ATGGTTATTGACTGCCCCGTCGAGAATCACAAATTCAAACCACCACGACCAGAGTTCCAAGTGCGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGATAACACCCTTACAGTGGCACGTCAATCTACTCGCCCTAAACCCTAACACAAAGCATGTCGGAATCTTTTGTCGCACACTCCGGGCCTCGCTCCTCTTCAATGGTGACCAAGAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTGTCAGTTTCAATATTACAACGGTGCTGCAGCGTGATGACGCCCTGGTGAAGCAAATCTCGCAAGGAAACAGCTCGTTATTTGGGGTTAAGGTGTCTCTCTATTACTACTACACGGCTGACGTCTGGGTTTGGTGCCTCAATTATGACCGTCAGAAAGAGTTCTTGTTGAAAGATGTCCCATTTCAGGTTTCTTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

157

Amino Acids

18.03

Weight (kDa)

6.82

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 405
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 450
AcvI CACGTG 1 cut(s) 234
AcyI GRCGYC 2 cut(s) 312, 393
AfiI CCNNNNNNNGG 2 cut(s) 123, 457
AgsI TTSAA 4 cut(s) 37, 208, 283, 442
AhlI ACTAGT 1 cut(s) 95
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 2 cut(s) 71, 345
AluI AGCT 2 cut(s) 71, 345
Alw26I GTCTC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 71, 298, 301
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 3 cut(s) 191, 261, 262
AsuHPI GGTGA 2 cut(s) 224, 331
AvaI CYCGRG 1 cut(s) 260
BanI GGYRCC 1 cut(s) 405
BbrPI CACGTG 1 cut(s) 234
BbvI GCAGC 3 cut(s) 58, 285, 313
BceAI ACGGC 2 cut(s) 59, 402
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 3 cut(s) 191, 261, 262
BcoDI GTCTC 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 299
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 3 cut(s) 72, 299, 302
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 73, 300, 303
Bme1390I CCNGG 4 cut(s) 191, 261, 262, 317
BmeT110I CYCGRG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 4 cut(s) 191, 261, 262, 317
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 3 cut(s) 191, 261, 262
BsaAI YACGTR 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 312, 393
BsaJI CCNNGG 3 cut(s) 259, 260, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 457
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 259, 260, 315
BseLI CCNNNNNNNGG 2 cut(s) 123, 457
BseMII CTCAG 2 cut(s) 81, 96
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 58, 285, 313
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 190, 261
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 123, 457
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 260
Bsp1720I GCTNAGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 80, 97
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 405
BssECI CCNNGG 3 cut(s) 259, 260, 315
BssNI GRCGYC 2 cut(s) 312, 393
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 4 cut(s) 123, 274, 295, 422
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 2 cut(s) 312, 393
BstBAI YACGTR 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 67, 105
BstEII GGTNACC 1 cut(s) 212
BstHHI GCGC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 189, 259, 260, 315
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 3 cut(s) 58, 285, 313
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 194
BtrI CACGTC 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 192
Cfr9I CCCGGG 1 cut(s) 260
CseI GACGC 1 cut(s) 320
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 71, 194, 345, 389
CviKI_1 RGCY 4 cut(s) 71, 194, 345, 389
DdeI CTNAG 2 cut(s) 67, 105
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco32I GATATC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 450
Eco72I CACGTG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 247
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 165, 417
FaqI GGGAC 1 cut(s) 434
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 72, 299, 302
Fsp4HI GCNGC 3 cut(s) 72, 299, 302
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 72, 299, 302
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 190, 261
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 2 cut(s) 312, 393
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 25, 171
HpaII CCGG 2 cut(s) 190, 261
HphI GGTGA 2 cut(s) 224, 331
Hpy188I TCNGA 3 cut(s) 170, 426, 469
Hpy188III TCNNGA 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 23
HpyCH4III ACNGT 4 cut(s) 123, 274, 295, 422
HpyCH4IV ACGT 3 cut(s) 129, 233, 393
HpyCH4V TGCA 3 cut(s) 227, 241, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 67, 105
HpySE526I ACGT 3 cut(s) 129, 233, 393
Hsp92I GRCGYC 2 cut(s) 312, 393
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 9 cut(s) 63, 117, 203, 227, 274, 302, 329, 382, 443
Lsp1109I GCAGC 3 cut(s) 58, 285, 313
MaeI CTAG 1 cut(s) 96
MaeII ACGT 3 cut(s) 129, 233, 393
MaeIII GTNAC 1 cut(s) 212
MboII GAAGA 2 cut(s) 196, 456
MluCI AATT 3 cut(s) 32, 222, 412
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 3 cut(s) 205, 212, 419
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 2 cut(s) 255, 360
MslI CAYNNNNRTG 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 190, 261
MspR9I CCNGG 4 cut(s) 191, 261, 262, 317
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 3 cut(s) 191, 261, 262
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 167
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 25, 171
PkrI GCNGC 3 cut(s) 73, 300, 303
PmaCI CACGTG 1 cut(s) 234
PmlI CACGTG 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 315
PspCI CACGTG 1 cut(s) 234
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 2 cut(s) 255, 360
SatI GCNGC 3 cut(s) 72, 299, 302
Sau96I GGNCC 1 cut(s) 192
ScrFI CCNGG 4 cut(s) 191, 261, 262, 317
SetI ASST 7 cut(s) 73, 132, 236, 347, 366, 396, 462
SfcI CTRYAG 1 cut(s) 299
SmaI CCCGGG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 3 cut(s) 32, 222, 412
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 4 cut(s) 189, 259, 260, 315
TaaI ACNGT 4 cut(s) 123, 274, 295, 422
TaiI ACGT 3 cut(s) 132, 236, 396
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 32, 222, 412
TfiI GAWTC 2 cut(s) 25, 171
Tru1I TTAA 2 cut(s) 255, 360
Tru9I TTAA 2 cut(s) 255, 360
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 71, 298, 301
Tsp45I GTSAC 1 cut(s) 212
TspMI CCCGGG 1 cut(s) 260
TspRI CASTG 1 cut(s) 128
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 1 cut(s) 96
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.