Rh3DG316500

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018584
Physical Location & Seq
Reverse (-)
34053466 .. 34054068
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG316500.1

Sequence Viewer

Length: 603 bp
ATGGCATATTATCGTCGTGACGAGGACTACAACTGCGAGTGCATTGACCATTGCCCCAAATGGTTCCTGAACACGGTGTGCGTCGTCGGTTCGCTAATCATCGCGTTCTGGTTTCTGGGATGGTTGTTCATGGTTATTGACTGCCCCATCGAGGATCACAAATTCAAACCACCACGACCAGAGTTCCAAGTGAGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGATAACACCCTTACAGTGGCACGTCAATCTACTCGCCCTAAACCCTAACACAAAGCATGTCGGAATCTTCTGTCGCACACTCCGGGCCTCGCTCCTCTTCAATGGTGACCAAGAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTGTCAGTTTCAATATTACAACGGTGCAGCAGCGTGATGACGCCCTGGTGAAGCAAATCTCGCAAGGAAACAGCTCATTATTCGGGGTTAAGGTGTCTCTCAATTACTACTACACGGCTGACGTCTGGGTTTGGTGCCTCAATTATGACCGTCAGAAAGAGTTCTTGTTGAAAGATGTCCCATTTCAGGTTTCTTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

23.16

Weight (kDa)

5.54

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 525
AccB1I GGYRCC 1 cut(s) 534
AccII CGCG 1 cut(s) 104
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 579
AcvI CACGTG 1 cut(s) 363
AcyI GRCGYC 2 cut(s) 441, 522
AdeI CACNNNGTG 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 73, 151, 252, 586
AgsI TTSAA 4 cut(s) 166, 337, 412, 571
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 3 cut(s) 195, 200, 474
AluI AGCT 3 cut(s) 195, 200, 474
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 200, 427, 430
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 3 cut(s) 320, 390, 391
AsuHPI GGTGA 2 cut(s) 353, 460
AvaI CYCGRG 1 cut(s) 389
BanI GGYRCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 197
BbrPI CACGTG 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 187, 439, 442
BccI CCATC 2 cut(s) 114, 155
BceAI ACGGC 2 cut(s) 188, 531
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 217
BcnI CCSGG 3 cut(s) 320, 390, 391
BcoDI GTCTC 1 cut(s) 501
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 1 cut(s) 225
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 3 cut(s) 201, 428, 431
BlpI GCTNAGC 1 cut(s) 196
BlsI GCNGC 3 cut(s) 202, 429, 432
Bme1390I CCNGG 4 cut(s) 320, 390, 391, 446
BmeT110I CYCGRG 1 cut(s) 389
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 65, 536
BmrFI CCNGG 4 cut(s) 320, 390, 391, 446
Bpu1102I GCTNAGC 1 cut(s) 196
BpuMI CCSGG 3 cut(s) 320, 390, 391
BsaAI YACGTR 1 cut(s) 363
BsaHI GRCGYC 2 cut(s) 441, 522
BsaJI CCNNGG 3 cut(s) 388, 389, 444
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 151, 252, 586
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 388, 389, 444
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 4 cut(s) 73, 151, 252, 586
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 210, 225
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 3 cut(s) 187, 439, 442
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 319, 390
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 4 cut(s) 73, 151, 252, 586
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 2 cut(s) 209, 226
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 65, 536
BspPI GGATC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 388, 389, 444
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 2 cut(s) 441, 522
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 5 cut(s) 76, 252, 403, 424, 551
Bst6I CTCTTC 1 cut(s) 338
BstACI GRCGYC 2 cut(s) 441, 522
BstBAI YACGTR 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 196, 234
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 296
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 318, 388, 389, 444
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 187, 439, 442
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 321
Cfr9I CCCGGG 1 cut(s) 389
CseI GACGC 2 cut(s) 70, 449
CviAII CATG 2 cut(s) 130, 293
CviJI RGCY 5 cut(s) 195, 200, 323, 474, 518
CviKI_1 RGCY 5 cut(s) 195, 200, 323, 474, 518
DdeI CTNAG 2 cut(s) 196, 234
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraIII CACNNNGTG 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 579
Eco72I CACGTG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 195
EcoO65I GGTNACC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 444
EcoRV GATATC 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 197
FaeI CATG 2 cut(s) 133, 296
FaiI YATR 4 cut(s) 7, 131, 294, 546
FaqI GGGAC 1 cut(s) 563
FatI CATG 2 cut(s) 129, 292
Fnu4HI GCNGC 3 cut(s) 201, 428, 431
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 201, 428, 431
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 201, 428, 431
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 319, 390
HgaI GACGC 2 cut(s) 70, 449
Hin1I GRCGYC 2 cut(s) 441, 522
Hin1II CATG 2 cut(s) 133, 296
HinfI GANTC 1 cut(s) 300
HpaII CCGG 2 cut(s) 319, 390
HphI GGTGA 2 cut(s) 353, 460
Hpy188I TCNGA 3 cut(s) 299, 555, 598
Hpy188III TCNNGA 2 cut(s) 17, 67
Hpy99I CGWCG 3 cut(s) 18, 86, 89
HpyCH4III ACNGT 5 cut(s) 76, 252, 403, 424, 551
HpyCH4IV ACGT 3 cut(s) 258, 362, 522
HpyCH4V TGCA 4 cut(s) 42, 356, 370, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 2 cut(s) 196, 234
HpySE526I ACGT 3 cut(s) 258, 362, 522
Hsp92I GRCGYC 2 cut(s) 441, 522
Hsp92II CATG 2 cut(s) 133, 296
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 3 cut(s) 187, 439, 442
MaeI CTAG 1 cut(s) 225
MaeII ACGT 3 cut(s) 258, 362, 522
MaeIII GTNAC 2 cut(s) 17, 341
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 295, 325, 585
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 4 cut(s) 161, 351, 502, 541
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 5 cut(s) 16, 145, 334, 341, 548
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 2 cut(s) 384, 489
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 319, 390
MspR9I CCNGG 4 cut(s) 320, 390, 391, 446
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 460
NciI CCSGG 3 cut(s) 320, 390, 391
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 133, 296
NlaIV GGNNCC 2 cut(s) 65, 536
NmuCI GTSAC 2 cut(s) 17, 341
NspI RCATGY 1 cut(s) 296
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 3 cut(s) 202, 429, 432
PmaCI CACGTG 1 cut(s) 363
PmlI CACGTG 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 444
PspCI CACGTG 1 cut(s) 363
PspEI GGTNACC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 65, 536
PspPI GGNCC 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 361
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 384, 489
SatI GCNGC 3 cut(s) 201, 428, 431
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 321
ScrFI CCNGG 4 cut(s) 320, 390, 391, 446
SduI GDGCHC 1 cut(s) 197
SetI ASST 8 cut(s) 197, 202, 261, 365, 476, 495, 525, 591
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 361
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 4 cut(s) 161, 351, 502, 541
SspI AATATT 1 cut(s) 415
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 318, 388, 389, 444
TaaI ACNGT 5 cut(s) 76, 252, 403, 424, 551
TaiI ACGT 3 cut(s) 261, 365, 525
TaqI TCGA 1 cut(s) 150
TasI AATT 4 cut(s) 161, 351, 502, 541
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 2 cut(s) 384, 489
Tru9I TTAA 2 cut(s) 384, 489
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 2 cut(s) 17, 341
TseI GCWGC 3 cut(s) 200, 427, 430
Tsp45I GTSAC 2 cut(s) 17, 341
TspDTI ATGAA 1 cut(s) 118
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 1 cut(s) 257
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 296
XmaI CCCGGG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 1 cut(s) 225
ZraI GACGTC 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.