Rh3BG317100

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018584
Physical Location & Seq
Reverse (-)
32495026 .. 32495622
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG317100.1

Sequence Viewer

Length: 597 bp
ATGGCACGTTCACTATCATATTATCGTCGTGACTACGACTTCGAATGCATTCATTGCCGCAAATACACGGTGTACGTCGTCGGTGCGCTAATCGTCGGGTTCTGGCTTCTGGGAGGCTTGTTCTTGGTTATTGACTGCCCCGTCGAGGATCACATATTCAAACCACCACGACCAGAGTTCCAAGTCCGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGTTAACACCCTTAGAGTGGCACGTCAATCTACTCGCCCTAAACCCTAACACAAAGCATGTCCGAATCTTCTGTAGCACCCTCCGGGCCTCGCTTCTCTTCAATGGTGACCGAGAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTGTCAGTTTCAATTTTACAACGCTGCTGCAGCGTGATGACGCCCTGGTGAAGCAAATCTCGCAAGGAAACAGCTCGTTATTTGGGGTTGGAGTGTCTCTCTATTACCGCTACGAGACTGACGTCTGGGTTTGGTGCCTCAATTATGAACGTCAGAAGGAGTTCTTGTTGAAAGATGTCCCATTTCAGGTTTCTTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

198

Amino Acids

22.96

Weight (kDa)

6.42

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 528
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 3 cut(s) 58, 187, 502
AclWI GGATC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 357
AcyI GRCGYC 2 cut(s) 435, 516
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 145, 246, 580
AgsI TTSAA 4 cut(s) 160, 331, 406, 565
AhlI ACTAGT 1 cut(s) 218
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 2 cut(s) 194, 468
AluI AGCT 2 cut(s) 194, 468
Alw26I GTCTC 2 cut(s) 495, 503
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 4 cut(s) 194, 418, 421, 424
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp700I GAANNNNTTC 2 cut(s) 48, 554
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 3 cut(s) 314, 384, 385
AsuHPI GGTGA 2 cut(s) 347, 454
AsuII TTCGAA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 383
BanI GGYRCC 1 cut(s) 528
BbrPI CACGTG 1 cut(s) 357
BbvI GCAGC 4 cut(s) 181, 405, 408, 436
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 440
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 3 cut(s) 314, 384, 385
BcoDI GTCTC 2 cut(s) 495, 503
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 301, 422
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 5 cut(s) 58, 195, 419, 422, 425
BlpI GCTNAGC 1 cut(s) 190
BlsI GCNGC 5 cut(s) 59, 196, 420, 423, 426
Bme1390I CCNGG 4 cut(s) 314, 384, 385, 440
BmeT110I CYCGRG 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 530
BmrFI CCNGG 4 cut(s) 314, 384, 385, 440
BoxI GACNNNNGTC 1 cut(s) 515
BplI GAGNNNNNCTC 2 cut(s) 477, 509
Bpu1102I GCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 42
BpuMI CCSGG 3 cut(s) 314, 384, 385
BsaAI YACGTR 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 435, 516
BsaJI CCNNGG 3 cut(s) 382, 383, 438
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 246, 580
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 382, 383, 438
BseLI CCNNNNNNNGG 3 cut(s) 145, 246, 580
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 204, 219
BseXI GCAGC 4 cut(s) 181, 405, 408, 436
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 2 cut(s) 313, 384
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 3 cut(s) 145, 246, 580
BsmAI GTCTC 2 cut(s) 495, 503
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 3 cut(s) 48, 50, 350
BsnI GGCC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 383
Bsp119I TTCGAA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 148
Bsp1720I GCTNAGC 1 cut(s) 190
BspACI CCGC 3 cut(s) 58, 187, 502
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 2 cut(s) 203, 220
BspLI GGNNCC 1 cut(s) 530
BspMAI CTGCAG 1 cut(s) 426
BspPI GGATC 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 528
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 382, 383, 438
BssMI GATC 1 cut(s) 148
BssNI GRCGYC 2 cut(s) 435, 516
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 70, 397
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 2 cut(s) 435, 516
BstAPI GCANNNNNTGC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 190, 228, 241
BstEII GGTNACC 1 cut(s) 335
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 495, 503
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 54, 424, 454
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 312, 382, 383, 438
BstSFI CTRYAG 2 cut(s) 301, 422
BstV1I GCAGC 4 cut(s) 181, 405, 408, 436
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 317
BtrI CACGTC 1 cut(s) 253
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 315
Cfr9I CCCGGG 1 cut(s) 383
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 287
CviJI RGCY 5 cut(s) 106, 117, 194, 317, 468
CviKI_1 RGCY 5 cut(s) 106, 117, 194, 317, 468
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 190, 228, 241
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 383
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 438
EcoRV GATATC 1 cut(s) 370
EcoT22I ATGCAT 1 cut(s) 50
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 19, 155, 288, 540
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 5 cut(s) 58, 195, 419, 422, 425
Fsp4HI GCNGC 5 cut(s) 58, 195, 419, 422, 425
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 87
GluI GCNGC 5 cut(s) 58, 195, 419, 422, 425
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 313, 384
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 2 cut(s) 435, 516
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 1 cut(s) 294
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 2 cut(s) 313, 384
HphI GGTGA 2 cut(s) 347, 454
Hpy166II GTNNAC 3 cut(s) 11, 73, 234
Hpy188I TCNGA 3 cut(s) 293, 549, 592
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 3 cut(s) 11, 73, 234
Hpy99I CGWCG 5 cut(s) 30, 80, 83, 98, 146
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 2 cut(s) 70, 397
HpyCH4IV ACGT 6 cut(s) 7, 75, 252, 356, 516, 544
HpyCH4V TGCA 4 cut(s) 48, 350, 364, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 424, 454
HpyF3I CTNAG 3 cut(s) 190, 228, 241
HpySE526I ACGT 6 cut(s) 7, 75, 252, 356, 516, 544
Hsp92I GRCGYC 2 cut(s) 435, 516
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 86
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 148
Lsp1109I GCAGC 4 cut(s) 181, 405, 408, 436
MaeI CTAG 1 cut(s) 219
MaeII ACGT 6 cut(s) 7, 75, 252, 356, 516, 544
MaeIII GTNAC 2 cut(s) 29, 335
MalI GATC 1 cut(s) 150
MbiI CCGCTC 1 cut(s) 189
MboI GATC 1 cut(s) 148
MboII GAAGA 3 cut(s) 289, 319, 579
MluCI AATT 3 cut(s) 345, 406, 535
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 107, 139, 320, 328, 542
Mph1103I ATGCAT 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 48, 554
MseI TTAA 2 cut(s) 233, 378
MslI CAYNNNNRTG 1 cut(s) 355
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 313, 384
MspR9I CCNGG 4 cut(s) 314, 384, 385, 440
Mva1269I GAATGC 3 cut(s) 48, 50, 350
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 54, 424, 454
NciI CCSGG 3 cut(s) 314, 384, 385
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 530
NmuCI GTSAC 2 cut(s) 29, 335
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 1 cut(s) 290
NspV TTCGAA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PctI GAATGC 3 cut(s) 48, 50, 350
PdmI GAANNNNTTC 2 cut(s) 48, 554
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 5 cut(s) 59, 196, 420, 423, 426
PmaCI CACGTG 1 cut(s) 357
PmlI CACGTG 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 357
PshAI GACNNNNGTC 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 438
PspCI CACGTG 1 cut(s) 357
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 2 cut(s) 233, 378
SatI GCNGC 5 cut(s) 58, 195, 419, 422, 425
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 4 cut(s) 314, 384, 385, 440
SetI ASST 9 cut(s) 10, 78, 196, 255, 359, 470, 519, 547, 585
SfcI CTRYAG 2 cut(s) 301, 422
SfuI TTCGAA 1 cut(s) 42
SmaI CCCGGG 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 355
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 3 cut(s) 345, 406, 535
SsiI CCGC 3 cut(s) 58, 187, 502
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 4 cut(s) 312, 382, 383, 438
TaaI ACNGT 2 cut(s) 70, 397
TaiI ACGT 6 cut(s) 10, 78, 255, 359, 519, 547
TaqI TCGA 2 cut(s) 42, 144
TaqII GACCGA 1 cut(s) 354
TasI AATT 3 cut(s) 345, 406, 535
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 2 cut(s) 233, 378
Tru9I TTAA 2 cut(s) 233, 378
TseFI GTSAC 2 cut(s) 29, 335
TseI GCWGC 4 cut(s) 194, 418, 421, 424
Tsp45I GTSAC 2 cut(s) 29, 335
TspDTI ATGAA 2 cut(s) 41, 555
TspMI CCCGGG 1 cut(s) 383
XceI RCATGY 1 cut(s) 290
XmaI CCCGGG 1 cut(s) 383
XmnI GAANNNNTTC 2 cut(s) 48, 554
XspI CTAG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.