RLG00000023010

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018584
Physical Location & Seq
Forward (+)
16619928 .. 16623281
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023010

Sequence Viewer

Length: 972 bp
ATGGACTTGTTCAGAAGGAATAAGACAGGGTTGTACGTAGAGGTTGTTTTCTTTTTAGATTCCATGATGCGTTCACTATCATATTATTGTCCCAAATGGGTCCATTACACGATGTACGTCGTCGGTGCGCTAATCGTCGCGTTCTGGCTTCTGGGAGGCTTGTTCTTGGTTATTGACTGCCCCGTCGAGGATCACATATTCAAACCACCACTACCAGAGTTCCAAGTCCGCTCAGCTGCCGTATCCTTACTCAACATCACTAGTCGCCCTGAGTTGACACCCTTAGAGTGGCACGTCAATCTACTCGCCCTAAACCCTAACACAAAGCATGTCAGAATCTTCTGTAGCACCCTCCGGGCCTCGCTTCTCTTCAATGGTGACCAACAAATTGCATTCACGTGGTTGCAGGATATCTCTTTTAACCCCGGGAACACAACTCAGCGTGATGACGCCCTGGTGAAGCAAATCTCGCAACGAAACAGCTCGTTATTTGGGGTTGGAGTGTCTCTCTATTACCGCTACTTGGCTGACGTCTGGGTTTGGTGCCTCAATTATAACCGTCAGAAGGAGTTCTTGTTGAAAGATGTCCCATTTCAGGGGGCACTTCTGTTGGGTTGCAGTTTATTTGGCTATTATAACTCCTCCATTGAAGCTGAAGCTGCTGCTGTTGTACAAGGACTTACAGAGGCATCAAGGCTTCATCTTTTGAACGTTCATGTGGAATGTGACAGCCAAGAGCTCATCAGCCCTCAAAACTTTGTTGCTGTCACTCCCGTTGTCGTCGGACGGGCTGTGGCCGTAGGCCACAATGGTAGATGGGAGGAGGAAGGAGAGTTCAGGGGCGCTGAGGGGTGGGGTTTCAGATCTTGCAAACCTAGAGGGGTTGGGATTTGGAACGTGGTTGCTGGTTTGGGGTCGGAGGAGTTTGAAACGGATCTCGACCTTCAGTTTGGAGGAGTCGGCGTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

324

Amino Acids

36.32

Weight (kDa)

5.53

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018584)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487371
rosa_laevigata RLG00000023010
rosa_roxburghii Rroxscaffold_6G00410360
rosa_samantha Rh3AG281500 Rh3BG317100 Rh3CG315200 Rh3CG318200 Rh3DG313100 Rh3DG316500 Rh3DG316700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 555, 636
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 231
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 229, 517
AclI AACGTT 1 cut(s) 711
AclWI GGATC 2 cut(s) 198, 942
AcoI YGGCCR 1 cut(s) 795
AcuI CTGAAG 2 cut(s) 675, 929
AcvI CACGTG 1 cut(s) 399
AcyI GRCGYC 2 cut(s) 450, 531
AfaI GTAC 3 cut(s) 35, 116, 672
AfiI CCNNNNNNNGG 6 cut(s) 187, 288, 523, 565, 595, 596
AgsI TTSAA 6 cut(s) 202, 373, 580, 650, 709, 929
AhlI ACTAGT 1 cut(s) 260
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 453
AloI GAACNNNNNNTCC 2 cut(s) 818, 850
AluBI AGCT 5 cut(s) 236, 483, 653, 659, 739
AluI AGCT 5 cut(s) 236, 483, 653, 659, 739
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 2 cut(s) 198, 942
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 3 cut(s) 357, 795, 802
ApeKI GCWGC 3 cut(s) 236, 659, 662
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 2 cut(s) 130, 845
AspS9I GGNCC 2 cut(s) 100, 357
AsuC2I CCSGG 3 cut(s) 356, 426, 427
AsuHPI GGTGA 2 cut(s) 389, 469
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 741
BbrPI CACGTG 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 741
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 3 cut(s) 223, 646, 649
BccI CCATC 1 cut(s) 810
BceAI ACGGC 2 cut(s) 224, 782
BciT130I CCWGG 1 cut(s) 455
BciVI GTATCC 1 cut(s) 253
BcnI CCSGG 3 cut(s) 356, 426, 427
BcoDI GTCTC 1 cut(s) 510
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 3 cut(s) 261, 876, 970
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 846
BfuI GTATCC 1 cut(s) 253
BglII AGATCT 1 cut(s) 863
BisI GCNGC 3 cut(s) 237, 660, 663
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 3 cut(s) 238, 661, 664
Bme1390I CCNGG 4 cut(s) 356, 426, 427, 455
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 100, 357
BmiI GGNNCC 2 cut(s) 101, 545
BmrFI CCNGG 4 cut(s) 356, 426, 427, 455
BmsI GCATC 2 cut(s) 57, 698
BplI GAGNNNNNCTC 2 cut(s) 492, 524
Bpu10I CCTNAGC 1 cut(s) 846
Bpu1102I GCTNAGC 1 cut(s) 232
BpuMI CCSGG 3 cut(s) 356, 426, 427
BsaAI YACGTR 2 cut(s) 37, 399
BsaHI GRCGYC 2 cut(s) 450, 531
BsaJI CCNNGG 3 cut(s) 424, 425, 453
BsaXI ACNNNNNCTCC 3 cut(s) 560, 590, 948
Bsc4I CCNNNNNNNGG 6 cut(s) 187, 288, 523, 565, 595, 596
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 3 cut(s) 424, 425, 453
BseLI CCNNNNNNNGG 6 cut(s) 187, 288, 523, 565, 595, 596
BseMII CTCAG 4 cut(s) 246, 261, 452, 837
BseRI GAGGAG 4 cut(s) 631, 836, 935, 969
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 3 cut(s) 223, 646, 649
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 3 cut(s) 359, 797, 804
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 741
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 355, 426
BslFI GGGAC 2 cut(s) 75, 572
BslI CCNNNNNNNGG 6 cut(s) 187, 288, 523, 565, 595, 596
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 75, 572
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 3 cut(s) 359, 797, 804
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 604, 741
Bsp1407I TGTACA 1 cut(s) 670
Bsp143I GATC 4 cut(s) 190, 863, 934, 966
Bsp1720I GCTNAGC 1 cut(s) 232
BspACI CCGC 2 cut(s) 229, 517
BspANI GGCC 3 cut(s) 359, 797, 804
BspCNI CTCAG 4 cut(s) 245, 262, 451, 838
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 101, 545
BspPI GGATC 2 cut(s) 198, 942
BspT107I GGYRCC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 670
BssECI CCNNGG 3 cut(s) 424, 425, 453
BssMI GATC 4 cut(s) 190, 863, 934, 966
BssNI GRCGYC 2 cut(s) 450, 531
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 2 cut(s) 450, 531
BstAUI TGTACA 1 cut(s) 670
BstBAI YACGTR 2 cut(s) 37, 399
BstDEI CTNAG 5 cut(s) 232, 270, 283, 438, 846
BstEII GGTNACC 1 cut(s) 377
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 2 cut(s) 130, 845
BstKTI GATC 4 cut(s) 193, 866, 937, 969
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 4 cut(s) 190, 863, 934, 966
BstMWI GCNNNNNNNGC 2 cut(s) 469, 659
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 4 cut(s) 354, 424, 425, 453
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 604
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 223, 646, 649
BstX2I RGATCY 2 cut(s) 863, 934
BstYI RGATCY 2 cut(s) 863, 934
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 3 cut(s) 359, 797, 804
BtrI CACGTC 1 cut(s) 295
CfoI GCGC 2 cut(s) 130, 845
Cfr13I GGNCC 2 cut(s) 100, 357
Cfr9I CCCGGG 1 cut(s) 425
CseI GACGC 1 cut(s) 458
Csp6I GTAC 3 cut(s) 34, 115, 671
CviAII CATG 3 cut(s) 64, 329, 716
CviQI GTAC 3 cut(s) 34, 115, 671
DdeI CTNAG 5 cut(s) 232, 270, 283, 438, 846
DpnI GATC 4 cut(s) 192, 865, 936, 968
DpnII GATC 4 cut(s) 190, 863, 934, 966
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 739
Eco105I TACGTA 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 739
Eco57I CTGAAG 2 cut(s) 675, 929
Eco72I CACGTG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 739
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 453
EcoRV GATATC 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 741
FaeI CATG 3 cut(s) 67, 332, 719
FaiI YATR 7 cut(s) 65, 82, 197, 330, 555, 636, 717
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 2 cut(s) 75, 572
FatI CATG 3 cut(s) 63, 328, 715
Fnu4HI GCNGC 3 cut(s) 237, 660, 663
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 3 cut(s) 237, 660, 663
FspBI CTAG 3 cut(s) 261, 876, 970
GlaI GCGC 2 cut(s) 129, 844
GluI GCNGC 3 cut(s) 237, 660, 663
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 3 cut(s) 359, 797, 804
HapII CCGG 2 cut(s) 355, 426
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 130, 845
Hin1I GRCGYC 2 cut(s) 450, 531
Hin1II CATG 3 cut(s) 67, 332, 719
Hin6I GCGC 2 cut(s) 128, 843
HinP1I GCGC 2 cut(s) 128, 843
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 3 cut(s) 59, 336, 957
HpaII CCGG 2 cut(s) 355, 426
HphI GGTGA 2 cut(s) 389, 469
Hpy166II GTNNAC 2 cut(s) 74, 276
Hpy188I TCNGA 6 cut(s) 14, 335, 564, 785, 863, 919
Hpy188III TCNNGA 1 cut(s) 938
Hpy8I GTNNAC 2 cut(s) 74, 276
Hpy99I CGWCG 5 cut(s) 122, 125, 140, 188, 785
HpyAV CCTTC 4 cut(s) 9, 559, 821, 953
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 7 cut(s) 36, 117, 294, 398, 531, 711, 897
HpyCH4V TGCA 4 cut(s) 392, 406, 618, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 469, 659
HpyF3I CTNAG 5 cut(s) 232, 270, 283, 438, 846
HpySE526I ACGT 7 cut(s) 36, 117, 294, 398, 531, 711, 897
Hsp92I GRCGYC 2 cut(s) 450, 531
Hsp92II CATG 3 cut(s) 67, 332, 719
HspAI GCGC 2 cut(s) 128, 843
Kzo9I GATC 4 cut(s) 190, 863, 934, 966
Lsp1109I GCAGC 3 cut(s) 223, 646, 649
LweI GCATC 2 cut(s) 57, 698
MaeI CTAG 3 cut(s) 261, 876, 970
MaeII ACGT 7 cut(s) 36, 117, 294, 398, 531, 711, 897
MaeIII GTNAC 3 cut(s) 377, 725, 766
MalI GATC 4 cut(s) 192, 865, 936, 968
MbiI CCGCTC 1 cut(s) 231
MboI GATC 4 cut(s) 190, 863, 934, 966
MboII GAAGA 2 cut(s) 331, 361
MflI RGATCY 2 cut(s) 863, 934
MhlI GDGCHC 2 cut(s) 604, 741
MluCI AATT 2 cut(s) 387, 550
MlyI GAGTC 1 cut(s) 966
MmeI TCCRAC 3 cut(s) 478, 763, 897
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 355, 426
MspR9I CCNGG 4 cut(s) 356, 426, 427, 455
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 469, 659
NciI CCSGG 3 cut(s) 356, 426, 427
NdeII GATC 4 cut(s) 190, 863, 934, 966
NlaIII CATG 3 cut(s) 67, 332, 719
NlaIV GGNNCC 2 cut(s) 101, 545
NmuCI GTSAC 3 cut(s) 377, 725, 766
NspI RCATGY 1 cut(s) 332
PctI GAATGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 2 cut(s) 59, 336
PkrI GCNGC 3 cut(s) 238, 661, 664
PleI GAGTC 1 cut(s) 965
PmaCI CACGTG 1 cut(s) 399
PmlI CACGTG 1 cut(s) 399
PpsI GAGTC 1 cut(s) 965
Ppu21I YACGTR 2 cut(s) 37, 399
PsiI TTATAA 2 cut(s) 555, 636
Psp124BI GAGCTC 1 cut(s) 741
Psp1406I AACGTT 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 453
PspCI CACGTG 1 cut(s) 399
PspEI GGTNACC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 101, 545
PspPI GGNCC 2 cut(s) 100, 357
PsuI RGATCY 2 cut(s) 863, 934
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 3 cut(s) 35, 116, 672
RsaNI GTAC 3 cut(s) 34, 115, 671
RseI CAYNNNNRTG 1 cut(s) 397
SacI GAGCTC 1 cut(s) 741
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 3 cut(s) 237, 660, 663
Sau3AI GATC 4 cut(s) 190, 863, 934, 966
Sau96I GGNCC 2 cut(s) 100, 357
SchI GAGTC 1 cut(s) 966
ScrFI CCNGG 4 cut(s) 356, 426, 427, 455
SduI GDGCHC 2 cut(s) 604, 741
SfaNI GCATC 2 cut(s) 57, 698
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 397
SnaBI TACGTA 1 cut(s) 37
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 2 cut(s) 387, 550
SsiI CCGC 2 cut(s) 229, 517
SspMI CTAG 3 cut(s) 261, 876, 970
SstI GAGCTC 1 cut(s) 741
StyD4I CCNGG 4 cut(s) 354, 424, 425, 453
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 7 cut(s) 39, 120, 297, 401, 534, 714, 900
TaqI TCGA 2 cut(s) 186, 939
TasI AATT 2 cut(s) 387, 550
TatI WGTACW 1 cut(s) 670
TfiI GAWTC 2 cut(s) 59, 336
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 3 cut(s) 377, 725, 766
TseI GCWGC 3 cut(s) 236, 659, 662
Tsp45I GTSAC 3 cut(s) 377, 725, 766
TspDTI ATGAA 2 cut(s) 689, 704
TspGWI ACGGA 1 cut(s) 947
TspMI CCCGGG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 100
XceI RCATGY 1 cut(s) 332
XmaI CCCGGG 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 3 cut(s) 261, 876, 970
ZraI GACGTC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.