Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Reverse (-)

38525140 .. 38527763

Gene Structure 2624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCCGGATCCCCAAAACAAACCCTTCAACGAACAAAAGCCCTTTCCCGTCGACCTGAAAGTCGTTACGGCAATTCCCGGTTTCCATAAAAAAAACAAAGCCCCACCTTTTTTCCAAGTTACCTCAAAATCCAATTTCACGTCTTCTACGCTCTGCCTTCTTCTGATTCTGAGCCTGCTCACCGTCACAATCTCGTCGCCGGGATCGCCGTTGATCCTCCGCGCCGTCAACAACGGCACCGTCGATTTGAACGTCACCAATTTCGATGCGGTGCTCCGTGAAACTCCGGCCACCTACGCACTAGTTGAATTCTTCGCTCACTGGTGTCCGGCATGCCGAAATTTTAAGCCGCATTATGAAAAGGTTGCGAGGCTGTTCAATGGGCCTGATGCTGTGTATCCGGGGATGTTATTGATGACAAGGGTTGACTGTGCATCAAAGATAAATACCAAACTCTGTGATAACTTCTCTGTAAGTCATTATCCTATGCTCTTTTGGGGCCCTCCATCTAAATTTGTATCTGCTGGTTGGGAGCCTAAACAAGAGAAGAGTGATATACAAGTCATTGATAATGGGCATACAGCTGACCGGCTGCTTAGTTGGATCAACAAGCAAATGGGCAGCTCATTTGGATTGGAGGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATCTCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

228

Amino Acids

25.4

Weight (kDa)

9.1

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST3_OST6	PF04756	74 - 216	3.4e-10	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	81 - 171	8.6e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	220, 269, 350
AclWI	GGATC	6 cut(s)	2, 15, 208, 211, 611, 648
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	308, 340, 512
AgsI	TTSAA	4 cut(s)	28, 250, 308, 379
AhlI	ACTAGT	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	141
AluBI	AGCT	2 cut(s)	584, 624
AluI	AGCT	2 cut(s)	584, 624
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	6 cut(s)	2, 15, 208, 211, 611, 648
AoxI	GGCC	3 cut(s)	288, 383, 499
ApaI	GGGCCC	1 cut(s)	503
ApeKI	GCWGC	2 cut(s)	592, 621
ApoI	RAATTY	3 cut(s)	308, 340, 512
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	383, 499, 500
AsuC2I	CCSGG	3 cut(s)	78, 201, 402
AsuHPI	GGTGA	2 cut(s)	172, 247
BaeGI	GKGCMC	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	579, 633
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	4 cut(s)	84, 193, 209, 250
BciVI	GTATCC	1 cut(s)	408
BcnI	CCSGG	3 cut(s)	78, 201, 402
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	350, 593, 622
BlsI	GCNGC	3 cut(s)	351, 594, 623
Bme1390I	CCNGG	3 cut(s)	78, 201, 402
BmgBI	CACGTC	1 cut(s)	141
BmgT120I	GGNCC	3 cut(s)	383, 499, 500
BmiI	GGNNCC	5 cut(s)	9, 238, 500, 501, 534
BmrFI	CCNGG	3 cut(s)	78, 201, 402
BmsI	GCATC	3 cut(s)	256, 379, 443
BpiI	GAAGAC	1 cut(s)	135
BpuMI	CCSGG	3 cut(s)	78, 201, 402
BsaJI	CCNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	579, 633
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	290, 385, 501
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	7 cut(s)	5, 78, 200, 287, 329, 401, 589
BsnI	GGCC	3 cut(s)	290, 385, 501
Bsp120I	GGGCCC	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	276, 503
Bsp143I	GATC	5 cut(s)	7, 203, 213, 603, 640
BspACI	CCGC	3 cut(s)	220, 269, 350
BspANI	GGCC	3 cut(s)	290, 385, 501
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	5 cut(s)	9, 238, 500, 501, 534
BspPI	GGATC	6 cut(s)	2, 15, 208, 211, 611, 648
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	5 cut(s)	7, 203, 213, 603, 640
Bst4CI	ACNGT	4 cut(s)	184, 241, 431, 672
Bst6I	CTCTTC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	176, 334
BstDEI	CTNAG	2 cut(s)	170, 596
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	10, 206, 216, 606, 643
BstMBI	GATC	5 cut(s)	7, 203, 213, 603, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 296
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	76, 199, 400
BstSLI	GKGCMC	1 cut(s)	503
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	579, 633
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	290, 385, 501
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	319, 668
Cac8I	GCNNGC	2 cut(s)	176, 334
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	3 cut(s)	383, 499, 500
CviAII	CATG	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	170, 596
DpnI	GATC	5 cut(s)	9, 205, 215, 605, 642
DpnII	GATC	5 cut(s)	7, 203, 213, 603, 640
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	503
EcoO109I	RGGNCCY	2 cut(s)	499, 500
EcoRI	GAATTC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	1 cut(s)	336
FaiI	YATR	6 cut(s)	87, 334, 357, 488, 557, 579
FatI	CATG	1 cut(s)	332
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	350, 593, 622
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	350, 593, 622
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	350, 593, 622
HaeIII	GGCC	3 cut(s)	290, 385, 501
HapII	CCGG	7 cut(s)	5, 78, 200, 287, 329, 401, 589
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	336
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	3 cut(s)	52, 229, 427
HindII	GTYRAC	3 cut(s)	52, 229, 427
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	7 cut(s)	5, 78, 200, 287, 329, 401, 589
HphI	GGTGA	2 cut(s)	172, 247
Hpy166II	GTNNAC	3 cut(s)	52, 229, 427
Hpy188I	TCNGA	3 cut(s)	165, 171, 681
Hpy8I	GTNNAC	3 cut(s)	52, 229, 427
Hpy99I	CGWCG	3 cut(s)	53, 199, 245
HpyAV	CCTTC	2 cut(s)	34, 167
HpyCH4III	ACNGT	4 cut(s)	184, 241, 431, 672
HpyCH4IV	ACGT	2 cut(s)	140, 252
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 296
HpyF3I	CTNAG	2 cut(s)	170, 596
HpySE526I	ACGT	2 cut(s)	140, 252
Hsp92II	CATG	1 cut(s)	336
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	7, 203, 213, 603, 640
LmnI	GCTCC	2 cut(s)	279, 532
Lsp1109I	GCAGC	2 cut(s)	579, 633
LweI	GCATC	3 cut(s)	256, 379, 443
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	140, 252
MaeIII	GTNAC	4 cut(s)	64, 118, 184, 253
MalI	GATC	5 cut(s)	9, 205, 215, 605, 642
MboI	GATC	5 cut(s)	7, 203, 213, 603, 640
MboII	GAAGA	4 cut(s)	135, 152, 304, 559
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	276, 503
MluCI	AATT	6 cut(s)	72, 133, 259, 308, 340, 512
MmeI	TCCRAC	1 cut(s)	581
MnlI	CCTC	5 cut(s)	133, 227, 363, 513, 631
MseI	TTAA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	7 cut(s)	5, 78, 200, 287, 329, 401, 589
MspR9I	CCNGG	3 cut(s)	78, 201, 402
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	205, 296
NciI	CCSGG	3 cut(s)	78, 201, 402
NdeII	GATC	5 cut(s)	7, 203, 213, 603, 640
NlaIII	CATG	1 cut(s)	336
NlaIV	GGNNCC	5 cut(s)	9, 238, 500, 501, 534
NmuCI	GTSAC	2 cut(s)	184, 253
NspI	RCATGY	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 249
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	351, 594, 623
PspN4I	GGNNCC	5 cut(s)	9, 238, 500, 501, 534
PspOMI	GGGCCC	1 cut(s)	499
PspPI	GGNCC	3 cut(s)	383, 499, 500
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	584
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	350, 593, 622
Sau3AI	GATC	5 cut(s)	7, 203, 213, 603, 640
Sau96I	GGNCC	3 cut(s)	383, 499, 500
ScrFI	CCNGG	3 cut(s)	78, 201, 402
SduI	GDGCHC	2 cut(s)	276, 503
SetI	ASST	9 cut(s)	57, 109, 125, 143, 255, 296, 366, 586, 626
SfaNI	GCATC	3 cut(s)	256, 379, 443
SpeI	ACTAGT	1 cut(s)	301
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	6 cut(s)	72, 133, 259, 308, 340, 512
SsiI	CCGC	3 cut(s)	220, 269, 350
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	76, 199, 400
TaaI	ACNGT	4 cut(s)	184, 241, 431, 672
TaiI	ACGT	2 cut(s)	143, 255
TaqI	TCGA	4 cut(s)	51, 243, 264, 643
TasI	AATT	6 cut(s)	72, 133, 259, 308, 340, 512
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	2 cut(s)	326, 675
TseFI	GTSAC	2 cut(s)	184, 253
TseI	GCWGC	2 cut(s)	592, 621
Tsp45I	GTSAC	2 cut(s)	184, 253
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	326, 675
XapI	RAATTY	3 cut(s)	308, 340, 512
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.