Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Forward (+)

12640413 .. 12642647

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTTCTACGCTCTGCCTTCTTCTGATTCTGAGCCTGCTCTCCGTCACAATCTCATCGCCGGGATCGCCGTCGATCCTCCGCGCCGTCAACACCTGCACCGCCGCCGTCGATTTGAACGTCACCAATTTCGATGCGGTGCTCCGTGACACTCCCGCCACCTACGCACTAGTTGAATTCTTCGCTAACTGGTGTCCGGCTTGCCGAAATTTTAAGCCGCATTATGAAAAGGTTGCGAGGCTGTTCAATGGGCCTGATGCTGTGTATCCGGGGATGGTATTGATGACAAGGGTTGACTGTGCGTCAAAGGGCCCTCCATCTAAATTTGTATCTGCTGGTTGGGAGCCTAAACAAGAGAAGAGTGATATACAAGTCATTGATAATGGGCGTACAGCTGACCTGCTGCTTAGTTGGATCAACAAGCAAATGGGCAGCTCATTTGGATTGGAGGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATCTCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

166

Amino Acids

17.97

Weight (kDa)

8.3

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	38 - 102	4.8e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	2 cut(s)	104, 408
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
AclWI	GGATC	4 cut(s)	70, 73, 422, 459
AcsI	RAATTY	3 cut(s)	176, 208, 323
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	118, 176, 247
AhdI	GACNNNNNGTC	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	169
AluBI	AGCT	2 cut(s)	395, 435
AluI	AGCT	2 cut(s)	395, 435
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	4 cut(s)	70, 73, 422, 459
AoxI	GGCC	2 cut(s)	251, 310
ApaI	GGGCCC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	403, 432
ApoI	RAATTY	3 cut(s)	176, 208, 323
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	251, 310, 311
AsuC2I	CCSGG	2 cut(s)	63, 270
AsuHPI	GGTGA	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	390, 444
BccI	CCATC	2 cut(s)	268, 325
BceAI	ACGGC	3 cut(s)	55, 71, 92
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	63, 270
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	2 cut(s)	104, 408
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	4 cut(s)	105, 218, 404, 433
BlsI	GCNGC	4 cut(s)	106, 219, 405, 434
Bme1390I	CCNGG	2 cut(s)	63, 270
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	251, 310, 311
BmiI	GGNNCC	2 cut(s)	312, 345
BmrFI	CCNGG	2 cut(s)	63, 270
BmsI	GCATC	2 cut(s)	124, 247
BpuMI	CCSGG	2 cut(s)	63, 270
BsaJI	CCNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	472
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	390, 444
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	253, 312
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	62, 197, 269
BsnI	GGCC	2 cut(s)	253, 312
Bsp120I	GGGCCC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	144, 314
Bsp143I	GATC	4 cut(s)	65, 75, 414, 451
BspACI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
BspANI	GGCC	2 cut(s)	253, 312
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	312, 345
BspMI	ACCTGC	2 cut(s)	104, 408
BspPI	GGATC	4 cut(s)	70, 73, 422, 459
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	65, 75, 414, 451
Bst4CI	ACNGT	2 cut(s)	299, 483
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	38, 202
BstDEI	CTNAG	2 cut(s)	32, 407
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	4 cut(s)	68, 78, 417, 454
BstMBI	GATC	4 cut(s)	65, 75, 414, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 164
BstSCI	CCNGG	2 cut(s)	61, 268
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	390, 444
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	253, 312
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	479
BveI	ACCTGC	2 cut(s)	104, 408
Cac8I	GCNNGC	2 cut(s)	38, 202
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	251, 310, 311
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	390
CviJI	RGCY	9 cut(s)	36, 200, 217, 241, 253, 312, 346, 395, 435
CviKI_1	RGCY	9 cut(s)	36, 200, 217, 241, 253, 312, 346, 395, 435
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	32, 407
DpnI	GATC	4 cut(s)	67, 77, 416, 453
DpnII	GATC	4 cut(s)	65, 75, 414, 451
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	353
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	314
EcoO109I	RGGNCCY	2 cut(s)	310, 311
EcoRI	GAATTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	314
FaiI	YATR	2 cut(s)	225, 368
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	4 cut(s)	105, 218, 404, 433
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	105, 218, 404, 433
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	4 cut(s)	105, 218, 404, 433
HaeIII	GGCC	2 cut(s)	253, 312
HapII	CCGG	3 cut(s)	62, 197, 269
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	91, 295
HindII	GTYRAC	2 cut(s)	91, 295
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	62, 197, 269
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	91, 295
Hpy188I	TCNGA	3 cut(s)	27, 33, 492
Hpy8I	GTNNAC	2 cut(s)	91, 295
Hpy99I	CGWCG	2 cut(s)	76, 113
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	299, 483
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 164
HpyF3I	CTNAG	2 cut(s)	32, 407
HpySE526I	ACGT	1 cut(s)	120
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	65, 75, 414, 451
LmnI	GCTCC	2 cut(s)	147, 343
LpnPI	CCDG	9 cut(s)	50, 75, 109, 175, 210, 267, 282, 321, 413
Lsp1109I	GCAGC	2 cut(s)	390, 444
LweI	GCATC	2 cut(s)	124, 247
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	46, 121, 146
MalI	GATC	4 cut(s)	67, 77, 416, 453
MboI	GATC	4 cut(s)	65, 75, 414, 451
MboII	GAAGA	3 cut(s)	14, 172, 370
MhlI	GDGCHC	2 cut(s)	144, 314
MluCI	AATT	4 cut(s)	127, 176, 208, 323
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	4 cut(s)	89, 231, 324, 442
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	62, 197, 269
MspR9I	CCNGG	2 cut(s)	63, 270
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	67, 164
NciI	CCSGG	2 cut(s)	63, 270
NdeII	GATC	4 cut(s)	65, 75, 414, 451
NlaIV	GGNNCC	2 cut(s)	312, 345
NmuCI	GTSAC	3 cut(s)	46, 121, 146
PaqCI	CACCTGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	106, 219, 405, 434
PspN4I	GGNNCC	2 cut(s)	312, 345
PspOMI	GGGCCC	1 cut(s)	310
PspPI	GGNCC	3 cut(s)	251, 310, 311
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	105, 218, 404, 433
Sau3AI	GATC	4 cut(s)	65, 75, 414, 451
Sau96I	GGNCC	3 cut(s)	251, 310, 311
ScrFI	CCNGG	2 cut(s)	63, 270
SduI	GDGCHC	2 cut(s)	144, 314
SetI	ASST	7 cut(s)	98, 123, 164, 234, 397, 402, 437
SfaNI	GCATC	2 cut(s)	124, 247
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	4 cut(s)	127, 176, 208, 323
SsiI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	61, 268
TaaI	ACNGT	2 cut(s)	299, 483
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	74, 111, 132, 454
TasI	AATT	4 cut(s)	127, 176, 208, 323
TauI	GCSGC	2 cut(s)	107, 220
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	3 cut(s)	46, 121, 146
TseI	GCWGC	2 cut(s)	403, 432
Tsp45I	GTSAC	3 cut(s)	46, 121, 146
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	2 cut(s)	34, 134
TspRI	CASTG	1 cut(s)	486
XapI	RAATTY	3 cut(s)	176, 208, 323
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.