Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Reverse (-)

36877811 .. 36882201

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGAGGAGTATCGATCTACAAAAAGTATTTCATCCGGTCATCTCTTCTCATTGCATTGTATACAGCTTGGACCTGGACATAACAATAAAATGGCAACACAGTTATGTTGTTACCTCAAAATCCAATTTCACGTCTTCTACGCTCTGCCTTCTTCTGATTCTGAGCCTGCTCACCGTCACAATCTCGTCGCCGGGATCGCCGTTGATCCTCCGCGCCGTCAACAACGGCACCGTCGATTTGAACGTCACCAATTTCGATGCGGTGCTCCGTGAAACTCCGGCCACCTACGCACTAGTTGAATTCTTCGCTCACTGGTGTCCGGCATGCCGAAATTTTAAGCCGCATTATGAAAAGGTTGCGAGGCTGTTCAATGGGCCTGATGCTGTGTATCCGGGGATGTTATTGATGACAAGGGTTGACTGTGCATCAAAGATAAATACCAAACTCTGTGATAACTTCTCTGTAAGTCATTATCCTATGCTCTTTTGGGGCCCTCCATCTAAATTTGTATCTGCTGGTTGGGAGCCTAAACAAGAGAAGAGTGATATACAAGTCATTGATAATGGGCATACAGCTGACCGGCTGCTTAGTTGGATCAACAAGCAAATGGGCAGCTCATTTGGATTGGAGGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATCTCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

226

Amino Acids

25.33

Weight (kDa)

8.72

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST3_OST6	PF04756	72 - 214	3.4e-10	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	79 - 169	8.5e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	216
AciI	CCGC	3 cut(s)	214, 263, 344
AclWI	GGATC	4 cut(s)	202, 205, 605, 642
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	302, 334, 506
AgsI	TTSAA	3 cut(s)	244, 302, 373
AhlI	ACTAGT	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	69, 578, 618
AluI	AGCT	3 cut(s)	69, 578, 618
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	4 cut(s)	202, 205, 605, 642
AoxI	GGCC	3 cut(s)	282, 377, 493
ApaI	GGGCCC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	586, 615
ApoI	RAATTY	3 cut(s)	302, 334, 506
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	73, 377, 493, 494
AsuC2I	CCSGG	2 cut(s)	195, 396
AsuHPI	GGTGA	2 cut(s)	166, 241
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	573, 627
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	3 cut(s)	187, 203, 244
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	402
BcnI	CCSGG	2 cut(s)	195, 396
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	3 cut(s)	344, 587, 616
BlsI	GCNGC	3 cut(s)	345, 588, 617
Bme1390I	CCNGG	3 cut(s)	77, 195, 396
Bme18I	GGWCC	1 cut(s)	73
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	4 cut(s)	73, 377, 493, 494
BmiI	GGNNCC	4 cut(s)	232, 494, 495, 528
BmrFI	CCNGG	3 cut(s)	77, 195, 396
BmsI	GCATC	3 cut(s)	250, 373, 437
BpiI	GAAGAC	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	195, 396
Bsa29I	ATCGAT	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	582
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	2 cut(s)	52, 655
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	34, 405
BseMI	GCAATG	2 cut(s)	52, 655
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	573, 627
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	284, 379, 495
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	6 cut(s)	38, 194, 281, 323, 395, 583
BsnI	GGCC	3 cut(s)	284, 379, 495
Bsp120I	GGGCCC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	270, 497
Bsp143I	GATC	5 cut(s)	16, 197, 207, 597, 634
BspACI	CCGC	3 cut(s)	214, 263, 344
BspANI	GGCC	3 cut(s)	284, 379, 495
BspCNI	CTCAG	1 cut(s)	156
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	4 cut(s)	232, 494, 495, 528
BspPI	GGATC	4 cut(s)	202, 205, 605, 642
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	52, 655
BsrFI	RCCGGY	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	5 cut(s)	16, 197, 207, 597, 634
BssNAI	GTATAC	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	5 cut(s)	104, 178, 235, 425, 666
Bst6I	CTCTTC	2 cut(s)	52, 536
BstC8I	GCNNGC	2 cut(s)	170, 328
BstDEI	CTNAG	2 cut(s)	164, 590
BstF5I	GGATG	2 cut(s)	34, 405
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	5 cut(s)	19, 200, 210, 600, 637
BstMBI	GATC	5 cut(s)	16, 197, 207, 597, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 290
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	3 cut(s)	75, 193, 394
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	573, 627
BstV2I	GAAGAC	1 cut(s)	129
BstZ17I	GTATAC	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	284, 379, 495
BsuTUI	ATCGAT	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	34, 405
BtsIMutI	CAGTG	2 cut(s)	313, 662
Cac8I	GCNNGC	2 cut(s)	170, 328
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	4 cut(s)	73, 377, 493, 494
ClaI	ATCGAT	1 cut(s)	15
CviAII	CATG	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	164, 590
DpnI	GATC	5 cut(s)	18, 199, 209, 599, 636
DpnII	GATC	5 cut(s)	16, 197, 207, 597, 634
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	52, 536
EarI	CTCTTC	2 cut(s)	52, 536
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	73
EcoO109I	RGGNCCY	2 cut(s)	493, 494
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	497
FaeI	CATG	1 cut(s)	330
FaiI	YATR	8 cut(s)	64, 83, 108, 328, 351, 482, 551, 573
FatI	CATG	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	344, 587, 616
FokI	GGATG	2 cut(s)	21, 412
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	344, 587, 616
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	344, 587, 616
HaeIII	GGCC	3 cut(s)	284, 379, 495
HapII	CCGG	6 cut(s)	38, 194, 281, 323, 395, 583
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	2 cut(s)	223, 421
HindII	GTYRAC	2 cut(s)	223, 421
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	6 cut(s)	38, 194, 281, 323, 395, 583
HphI	GGTGA	2 cut(s)	166, 241
Hpy166II	GTNNAC	3 cut(s)	64, 223, 421
Hpy188I	TCNGA	3 cut(s)	159, 165, 675
Hpy8I	GTNNAC	3 cut(s)	64, 223, 421
Hpy99I	CGWCG	2 cut(s)	193, 239
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	5 cut(s)	104, 178, 235, 425, 666
HpyCH4IV	ACGT	2 cut(s)	134, 246
HpyCH4V	TGCA	2 cut(s)	57, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 290
HpyF3I	CTNAG	2 cut(s)	164, 590
HpySE526I	ACGT	2 cut(s)	134, 246
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	5 cut(s)	16, 197, 207, 597, 634
LmnI	GCTCC	2 cut(s)	273, 526
Lsp1109I	GCAGC	2 cut(s)	573, 627
LweI	GCATC	3 cut(s)	250, 373, 437
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	134, 246
MaeIII	GTNAC	3 cut(s)	112, 178, 247
MalI	GATC	5 cut(s)	18, 199, 209, 599, 636
MboI	GATC	5 cut(s)	16, 197, 207, 597, 634
MboII	GAAGA	6 cut(s)	16, 39, 129, 146, 298, 553
MhlI	GDGCHC	2 cut(s)	270, 497
MluCI	AATT	5 cut(s)	127, 253, 302, 334, 506
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	5 cut(s)	127, 221, 357, 507, 625
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	6 cut(s)	38, 194, 281, 323, 395, 583
MspR9I	CCNGG	3 cut(s)	77, 195, 396
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	199, 290
NciI	CCSGG	2 cut(s)	195, 396
NdeII	GATC	5 cut(s)	16, 197, 207, 597, 634
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	4 cut(s)	232, 494, 495, 528
NmuCI	GTSAC	2 cut(s)	178, 247
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 243
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	345, 588, 617
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	232, 494, 495, 528
PspOMI	GGGCCC	1 cut(s)	493
PspPI	GGNCC	4 cut(s)	73, 377, 493, 494
PvuII	CAGCTG	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	344, 587, 616
Sau3AI	GATC	5 cut(s)	16, 197, 207, 597, 634
Sau96I	GGNCC	4 cut(s)	73, 377, 493, 494
ScrFI	CCNGG	3 cut(s)	77, 195, 396
SduI	GDGCHC	2 cut(s)	270, 497
SetI	ASST	9 cut(s)	71, 78, 119, 137, 249, 290, 360, 580, 620
SfaNI	GCATC	3 cut(s)	250, 373, 437
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	105
SpeI	ACTAGT	1 cut(s)	295
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	5 cut(s)	127, 253, 302, 334, 506
SsiI	CCGC	3 cut(s)	214, 263, 344
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	75, 193, 394
TaaI	ACNGT	5 cut(s)	104, 178, 235, 425, 666
TaiI	ACGT	2 cut(s)	137, 249
TaqI	TCGA	4 cut(s)	15, 237, 258, 637
TasI	AATT	5 cut(s)	127, 253, 302, 334, 506
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	320, 669
TseFI	GTSAC	2 cut(s)	178, 247
TseI	GCWGC	2 cut(s)	586, 615
Tsp45I	GTSAC	2 cut(s)	178, 247
TspDTI	ATGAA	3 cut(s)	17, 23, 366
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	320, 669
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	3 cut(s)	302, 334, 506
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.