Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000424.1

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Forward (+)

46097 .. 47850

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000424.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtcttctacgctctgccttcttcttcttctgattctgagcctgctcaccgttacaatctcgtcgccgggatcgcggtcgatcctccgagccgtcaactccggcaccgccgccgatctccgcgactacgccgtcgatttgaacgtcaccaatttcgatgcggtgttccgtgacactcccgccacctacgcagtagtcgaattcttcgctcactggtcagctattcccaattctcactcctcattttcgtgtccggcttgccgaaattataagccgcattatgaaaaggttgcgaggctgttcaatgggcctgaagctgtgtatccggggatgatattgatgacaagggttgactgtgcgtcaaagataaataccaaactctgtgataacttctctgtaagccattatcctatgctcttttggggccctccatctaaatttgtatctgctggttgggagcctaaacaagagaagagcgatatacaagtcattgataatgggcgtacagctgaccggctgcttagttggatcaacaagaaaatgggcaggtatgatgtatttatatctattgttttatttaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

8.81

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	2 cut(s)	76, 123
AciI	CCGC	7 cut(s)	76, 108, 111, 121, 161, 180, 275
AclWI	GGATC	3 cut(s)	76, 79, 536
AcsI	RAATTY	2 cut(s)	200, 437
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	142, 304
AhdI	GACNNNNNGTC	1 cut(s)	358
AluBI	AGCT	3 cut(s)	221, 317, 509
AluI	AGCT	3 cut(s)	221, 317, 509
AlwI	GGATC	3 cut(s)	76, 79, 536
AoxI	GGCC	2 cut(s)	308, 424
ApaI	GGGCCC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	2 cut(s)	200, 437
AspS9I	GGNCC	3 cut(s)	308, 424, 425
AsuC2I	CCSGG	2 cut(s)	69, 327
AsuHPI	GGTGA	2 cut(s)	40, 139
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	2 cut(s)	77, 116
BciVI	GTATCC	1 cut(s)	333
BcnI	CCSGG	2 cut(s)	69, 327
BfuAI	ACCTGC	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	3 cut(s)	111, 275, 518
BlsI	GCNGC	3 cut(s)	112, 276, 519
Bme1390I	CCNGG	2 cut(s)	69, 327
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	308, 424, 425
BmiI	GGNNCC	4 cut(s)	106, 425, 426, 459
BmrFI	CCNGG	2 cut(s)	69, 327
BmsI	GCATC	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	69, 327
BsaJI	CCNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	504
Bsh1236I	CGCG	2 cut(s)	76, 123
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	310, 426
BshNI	GGYRCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	80
BsiSI	CCGG	5 cut(s)	68, 102, 254, 326, 514
BsnI	GGCC	2 cut(s)	310, 426
Bsp120I	GGGCCC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	4 cut(s)	71, 81, 115, 528
BspACI	CCGC	7 cut(s)	76, 108, 111, 121, 161, 180, 275
BspANI	GGCC	2 cut(s)	310, 426
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	2 cut(s)	76, 123
BspLI	GGNNCC	4 cut(s)	106, 425, 426, 459
BspMI	ACCTGC	1 cut(s)	537
BspPI	GGATC	3 cut(s)	76, 79, 536
BspQI	GCTCTTC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	4 cut(s)	71, 81, 115, 528
Bst4CI	ACNGT	2 cut(s)	52, 356
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	44, 259
BstDEI	CTNAG	2 cut(s)	38, 521
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	2 cut(s)	76, 123
BstKTI	GATC	4 cut(s)	74, 84, 118, 531
BstMBI	GATC	4 cut(s)	71, 81, 115, 528
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 188
BstSCI	CCNGG	2 cut(s)	67, 325
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	2 cut(s)	76, 123
BstV1I	GCAGC	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	310, 426
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	44, 259
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	308, 424, 425
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	504
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	2 cut(s)	38, 521
DpnI	GATC	4 cut(s)	73, 83, 117, 530
DpnII	GATC	4 cut(s)	71, 81, 115, 528
DraI	TTTAAA	1 cut(s)	580
DrdI	GACNNNNNNGTC	1 cut(s)	131
DriI	GACNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	467
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	2 cut(s)	424, 425
EcoRI	GAATTC	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	428
FaiI	YATR	6 cut(s)	270, 282, 413, 482, 552, 563
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	111, 275, 518
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	111, 275, 518
GluI	GCNGC	3 cut(s)	111, 275, 518
HaeIII	GGCC	2 cut(s)	310, 426
HapII	CCGG	5 cut(s)	68, 102, 254, 326, 514
HgaI	GACGC	1 cut(s)	348
HincII	GTYRAC	2 cut(s)	97, 352
HindII	GTYRAC	2 cut(s)	97, 352
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	5 cut(s)	68, 102, 254, 326, 514
HphI	GGTGA	2 cut(s)	40, 139
Hpy166II	GTNNAC	2 cut(s)	97, 352
Hpy188I	TCNGA	3 cut(s)	33, 39, 89
Hpy8I	GTNNAC	2 cut(s)	97, 352
Hpy99I	CGWCG	2 cut(s)	67, 137
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	52, 356
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 188
HpyF3I	CTNAG	2 cut(s)	38, 521
HpySE526I	ACGT	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	71, 81, 115, 528
LguI	GCTCTTC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	52, 145, 170
MalI	GATC	4 cut(s)	73, 83, 117, 530
MboI	GATC	4 cut(s)	71, 81, 115, 528
MboII	GAAGA	5 cut(s)	14, 17, 20, 196, 484
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	5 cut(s)	151, 200, 229, 265, 437
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	4 cut(s)	95, 250, 288, 438
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	5 cut(s)	68, 102, 254, 326, 514
MspR9I	CCNGG	2 cut(s)	69, 327
MvnI	CGCG	2 cut(s)	76, 123
MwoI	GCNNNNNNNGC	2 cut(s)	73, 188
NciI	CCSGG	2 cut(s)	69, 327
NdeII	GATC	4 cut(s)	71, 81, 115, 528
NlaIV	GGNNCC	4 cut(s)	106, 425, 426, 459
NmuCI	GTSAC	2 cut(s)	145, 170
PciSI	GCTCTTC	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 195
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	112, 276, 519
PsiI	TTATAA	1 cut(s)	270
PspN4I	GGNNCC	4 cut(s)	106, 425, 426, 459
PspOMI	GGGCCC	1 cut(s)	424
PspPI	GGNCC	3 cut(s)	308, 424, 425
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	111, 275, 518
Sau3AI	GATC	4 cut(s)	71, 81, 115, 528
Sau96I	GGNCC	3 cut(s)	308, 424, 425
ScrFI	CCNGG	2 cut(s)	69, 327
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	7 cut(s)	147, 188, 223, 291, 319, 511, 551
SfaNI	GCATC	1 cut(s)	148
SmiI	ATTTAAAT	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	5 cut(s)	151, 200, 229, 265, 437
SsiI	CCGC	7 cut(s)	76, 108, 111, 121, 161, 180, 275
StyD4I	CCNGG	2 cut(s)	67, 325
SwaI	ATTTAAAT	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	52, 356
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	4 cut(s)	80, 135, 156, 198
TasI	AATT	5 cut(s)	151, 200, 229, 265, 437
TauI	GCSGC	2 cut(s)	113, 277
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	145, 170
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	2 cut(s)	145, 170
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	218
XapI	RAATTY	2 cut(s)	200, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.